Wall clock time and date at job start Mon Mar 30 2020 00:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47311 * 2 1 4 4 N 1.28511 * 124.44584 * 269.97664 * 3 2 1 5 5 C 1.31134 * 109.06311 * 179.73596 * 4 3 2 6 6 C 1.50700 * 127.11708 * 180.29375 * 5 4 3 7 7 C 1.40926 * 105.76889 * 0.42719 * 5 4 3 8 8 C 1.47806 * 127.23185 * 179.83894 * 7 5 4 9 9 O 1.21559 * 120.00235 * 359.71602 * 8 7 5 10 10 N 1.34774 * 119.99683 * 179.71256 * 8 7 5 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.36942 * 120.00106 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99638 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00269 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47144 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47521 * 119.99459 * 18 16 14 21 21 H 1.48500 * 109.47391 * 239.99828 * 18 16 14 22 22 N 1.28592 * 124.44242 * 89.99882 * 3 2 1 23 23 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47179 * 299.99712 * 1 2 3 25 25 H 1.08996 * 109.46647 * 60.00184 * 1 2 3 26 26 H 1.09008 * 109.47470 * 239.99677 * 2 1 3 27 27 H 1.09006 * 109.47140 * 120.00058 * 2 1 3 28 28 H 1.08993 * 109.46952 * 270.16616 * 6 5 4 29 29 H 1.09000 * 109.47107 * 30.16517 * 6 5 4 30 30 H 1.09001 * 109.46928 * 150.16513 * 6 5 4 31 31 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 33 33 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 34 34 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 35 35 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 36 36 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 37 37 H 0.97000 * 120.00516 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 3.0681 4.3901 -1.6293 7 6 2.6857 3.2674 0.6973 8 6 3.0802 4.3825 1.5836 9 8 3.4527 5.4363 1.1056 10 7 3.0268 4.2310 2.9217 11 6 3.4173 5.3364 3.8003 12 6 3.2659 4.9053 5.2605 13 7 3.6557 6.0110 6.1389 14 6 3.6024 5.8567 7.4986 15 1 3.2725 4.9201 7.9232 16 6 3.9713 6.9045 8.3310 17 7 4.3728 8.0461 7.8135 18 14 3.8979 6.6943 10.1856 19 1 3.4164 5.3275 10.5103 20 1 5.2528 6.8917 10.7603 21 1 2.9654 7.6967 10.7609 22 7 2.2608 2.0669 1.0605 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.1324 4.3232 -1.8548 29 1 2.4957 4.3217 -2.5544 30 1 2.8591 5.3426 -1.1423 31 1 2.7292 3.3903 3.3032 32 1 4.4559 5.6048 3.6069 33 1 2.7775 6.1975 3.6071 34 1 2.2274 4.6367 5.4541 35 1 3.9059 4.0444 5.4533 36 1 3.9524 6.8520 5.7576 37 1 4.6310 8.7782 8.3951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153752803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:28 Heat of formation + Delta-G solvation = 76.882124 kcal Electronic energy + Delta-G solvation = -19466.279174 eV Core-core repulsion = 16281.661761 eV Total energy + Delta-G solvation = -3184.617413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.84150 -39.35825 -35.78986 -35.31465 -33.96344 -33.07210 -31.69185 -31.10034 -28.46860 -27.65266 -25.30104 -23.59340 -22.70424 -21.48951 -21.20619 -20.41414 -17.96502 -17.31723 -17.05799 -16.72529 -15.57856 -15.23945 -14.94251 -14.53531 -14.15102 -13.90281 -13.81922 -13.45743 -13.18000 -13.05691 -12.88987 -12.76729 -12.55311 -11.91717 -11.64424 -11.45165 -11.17468 -11.09806 -10.82054 -10.80810 -10.46082 -10.14222 -10.01988 -9.74370 -9.41146 -8.97919 -8.81567 -6.98026 -5.78532 -3.09134 1.18565 1.76192 1.88205 3.15002 3.27475 3.43090 3.48412 3.50905 3.71142 4.34020 4.36977 4.56702 4.60302 4.61986 4.82699 5.06263 5.16759 5.30920 5.50591 5.51576 5.52807 5.56060 5.62778 5.78677 5.79473 5.97405 6.09555 6.18122 6.35053 6.47768 6.72183 6.74540 7.55036 7.67893 7.97676 8.23565 8.39173 9.50562 10.05212 10.40187 11.44161 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.003191 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.382293 B = 8773.388139 C = 9595.355803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.143 5.143 4 N -0.295 5.295 5 C 0.061 3.939 6 C -0.069 4.069 7 C -0.044 4.044 8 C 0.606 3.394 9 O -0.526 6.526 10 N -0.707 5.707 11 C 0.111 3.889 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 N -0.249 5.249 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.406 0.594 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.450 -16.514 -19.144 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.045 5.045 4 N -0.136 5.136 5 C -0.103 4.103 6 C -0.127 4.127 7 C -0.207 4.207 8 C 0.388 3.612 9 O -0.400 6.400 10 N -0.358 5.358 11 C -0.012 4.012 12 C 0.016 3.984 13 N -0.375 5.375 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.579 5.579 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.097 5.097 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.240 0.760 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.648 -17.099 -19.280 26.614 hybrid contribution 0.172 0.435 1.174 1.264 sum -6.476 -16.664 -18.105 25.445 Atomic orbital electron populations 1.22195 0.92867 1.04052 1.03893 1.22092 0.96237 0.74082 1.06104 1.48102 1.43862 1.13381 0.99174 1.73924 1.19091 1.05216 1.15340 1.23290 1.00595 0.93714 0.92695 1.20240 1.01982 0.93763 0.96744 1.23004 1.09547 0.93678 0.94451 1.16581 0.78088 0.84918 0.81595 1.90796 1.47353 1.26659 1.75231 1.45778 1.66652 1.18157 1.05165 1.21661 1.01140 0.88685 0.89763 1.20755 0.97835 0.92648 0.87159 1.42189 1.80124 1.12556 1.02591 1.19243 1.37665 0.98358 0.82117 0.90970 1.24775 1.01896 0.96014 0.98181 1.69674 1.50671 1.03576 1.33950 0.86081 0.77224 0.77243 0.85390 1.20510 1.21783 1.21787 1.74338 1.14909 1.04508 1.15920 0.89404 0.91172 0.91355 0.87139 0.87024 0.90049 0.90762 0.88458 0.75971 0.90865 0.90867 0.95689 0.95681 0.77970 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.13 0.79 7.24 -4.04 -0.03 0.76 16 3 N -0.14 -1.54 3.94 -10.61 -0.04 -1.59 16 4 N -0.29 -3.57 12.01 33.92 0.41 -3.16 16 5 C 0.06 0.79 7.39 -81.87 -0.61 0.18 16 6 C -0.07 -0.72 10.00 36.01 0.36 -0.36 16 7 C -0.04 -0.62 7.21 -82.68 -0.60 -1.21 16 8 C 0.61 9.57 7.83 -12.35 -0.10 9.47 16 9 O -0.53 -9.48 15.20 5.31 0.08 -9.40 16 10 N -0.71 -10.67 5.55 -61.26 -0.34 -11.01 16 11 C 0.11 1.94 5.79 -4.04 -0.02 1.92 16 12 C 0.14 2.88 6.37 -4.05 -0.03 2.85 16 13 N -0.73 -18.66 5.60 -59.91 -0.34 -19.00 16 14 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 18 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 N -0.25 -3.16 11.84 33.42 0.40 -2.76 16 23 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 1.13 6.77 -51.93 -0.35 0.78 16 31 H 0.41 5.39 8.24 -40.82 -0.34 5.05 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.39 10.40 7.67 -40.82 -0.31 10.09 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 324.02 15.07 4.88 4.88 Total: -1.00 -34.00 324.02 -5.33 -39.33 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.20 Total: 7.25 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.88 Total: 5.71 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: 0.81 Total: -65.12 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.40 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.00 -5.33 -39.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153752803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.210 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds