Wall clock time and date at job start Mon Mar 30 2020 00:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47311 * 2 1 4 4 N 1.28511 * 124.44584 * 269.97664 * 3 2 1 5 5 C 1.31134 * 109.06311 * 179.73596 * 4 3 2 6 6 C 1.50700 * 127.11708 * 180.29375 * 5 4 3 7 7 C 1.40926 * 105.76889 * 0.42719 * 5 4 3 8 8 C 1.47806 * 127.23185 * 179.83894 * 7 5 4 9 9 O 1.21559 * 120.00235 * 359.71602 * 8 7 5 10 10 N 1.34774 * 119.99683 * 179.71256 * 8 7 5 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 N 1.46496 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.36942 * 120.00106 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99638 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00269 * 180.02562 * 14 13 12 17 17 N 1.31615 * 120.00146 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00181 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47144 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47521 * 119.99459 * 18 16 14 21 21 H 1.48500 * 109.47391 * 239.99828 * 18 16 14 22 22 N 1.28592 * 124.44242 * 89.99882 * 3 2 1 23 23 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47179 * 299.99712 * 1 2 3 25 25 H 1.08996 * 109.46647 * 60.00184 * 1 2 3 26 26 H 1.09008 * 109.47470 * 239.99677 * 2 1 3 27 27 H 1.09006 * 109.47140 * 120.00058 * 2 1 3 28 28 H 1.08993 * 109.46952 * 270.16616 * 6 5 4 29 29 H 1.09000 * 109.47107 * 30.16517 * 6 5 4 30 30 H 1.09001 * 109.46928 * 150.16513 * 6 5 4 31 31 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 33 33 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 34 34 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 35 35 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 36 36 H 0.96994 * 120.00508 * 359.97438 * 13 12 11 37 37 H 0.97000 * 120.00516 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2611 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 3.0681 4.3901 -1.6293 7 6 2.6857 3.2674 0.6973 8 6 3.0802 4.3825 1.5836 9 8 3.4527 5.4363 1.1056 10 7 3.0268 4.2310 2.9217 11 6 3.4173 5.3364 3.8003 12 6 3.2659 4.9053 5.2605 13 7 3.6557 6.0110 6.1389 14 6 3.6024 5.8567 7.4986 15 1 3.2725 4.9201 7.9232 16 6 3.9713 6.9045 8.3310 17 7 4.3728 8.0461 7.8135 18 14 3.8979 6.6943 10.1856 19 1 3.4164 5.3275 10.5103 20 1 5.2528 6.8917 10.7603 21 1 2.9654 7.6967 10.7609 22 7 2.2608 2.0669 1.0605 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 4.1324 4.3232 -1.8548 29 1 2.4957 4.3217 -2.5544 30 1 2.8591 5.3426 -1.1423 31 1 2.7292 3.3903 3.3032 32 1 4.4559 5.6048 3.6069 33 1 2.7775 6.1975 3.6071 34 1 2.2274 4.6367 5.4541 35 1 3.9059 4.0444 5.4533 36 1 3.9524 6.8520 5.7576 37 1 4.6310 8.7782 8.3951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153752803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:27 Heat of formation + Delta-G solvation = 50.635428 kcal Electronic energy + Delta-G solvation = -19467.417316 eV Core-core repulsion = 16281.661761 eV Total energy + Delta-G solvation = -3185.755555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.76972 -40.64451 -37.37326 -36.08492 -35.59758 -34.12968 -33.10288 -32.34283 -29.80602 -28.80667 -26.48477 -25.22203 -23.64424 -23.03498 -22.13422 -21.60746 -19.40820 -18.81684 -18.15739 -17.64784 -16.98720 -16.60048 -16.46752 -15.60520 -15.35934 -15.18940 -15.03282 -14.88478 -14.67200 -14.26322 -13.82558 -13.44738 -13.12126 -13.04743 -13.03335 -12.70041 -12.61936 -12.50606 -12.36007 -12.08924 -12.04214 -11.86212 -11.42501 -11.30792 -11.00448 -10.40380 -10.11733 -9.06207 -7.96317 -5.27742 0.14949 0.79208 1.15436 1.49348 1.50662 1.60794 1.92884 2.08446 2.57302 2.78144 3.38051 3.58219 3.77857 3.90860 3.94465 3.99855 4.15977 4.22017 4.23513 4.41408 4.55547 4.60014 4.70204 4.75067 4.79358 4.95729 4.98601 5.12165 5.15190 5.24023 5.32789 5.49546 5.55542 6.24675 6.33769 6.96218 7.06374 7.31176 8.02198 8.25949 9.27515 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.030185 B = 0.003191 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.382293 B = 8773.388139 C = 9595.355803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.129 5.129 4 N -0.297 5.297 5 C 0.051 3.949 6 C -0.066 4.066 7 C -0.070 4.070 8 C 0.607 3.393 9 O -0.553 6.553 10 N -0.698 5.698 11 C 0.128 3.872 12 C 0.149 3.851 13 N -0.746 5.746 14 C -0.248 4.248 15 H 0.082 0.918 16 C -0.076 4.076 17 N -0.970 5.970 18 Si 0.979 3.021 19 H -0.263 1.263 20 H -0.293 1.293 21 H -0.293 1.293 22 N -0.249 5.249 23 H 0.118 0.882 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.416 0.584 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.375 0.625 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 -18.964 -19.405 28.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.034 5.034 4 N -0.139 5.139 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.231 4.231 8 C 0.391 3.609 9 O -0.430 6.430 10 N -0.350 5.350 11 C 0.004 3.996 12 C 0.022 3.978 13 N -0.389 5.389 14 C -0.380 4.380 15 H 0.100 0.900 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.220 1.220 21 H -0.220 1.220 22 N -0.098 5.098 23 H 0.136 0.864 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.253 0.747 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.207 0.793 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.410 -19.610 -19.557 28.670 hybrid contribution 0.338 1.031 1.158 1.587 sum -7.072 -18.579 -18.399 27.087 Atomic orbital electron populations 1.22177 0.91992 1.05639 1.02571 1.22686 0.96933 0.71949 1.08282 1.48738 1.41911 1.14338 0.98429 1.73936 1.19237 1.05022 1.15699 1.23625 1.00491 0.94513 0.92555 1.20272 1.02842 0.92360 0.97027 1.22718 1.11768 0.93898 0.94702 1.16776 0.77363 0.85079 0.81632 1.90777 1.48591 1.27937 1.75701 1.45583 1.66605 1.17912 1.04878 1.21275 1.00391 0.89056 0.88861 1.20825 0.98237 0.91261 0.87508 1.42402 1.80292 1.13528 1.02702 1.19681 1.36352 0.98525 0.83394 0.89998 1.25655 1.02401 0.95891 1.02865 1.69836 1.52354 1.04421 1.35395 0.85000 0.76779 0.77775 0.79721 1.18677 1.22007 1.22017 1.74292 1.14746 1.04165 1.16641 0.86361 0.92667 0.92407 0.84812 0.85093 0.89199 0.88747 0.89884 0.74747 0.91850 0.91862 0.94602 0.94578 0.79265 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 71.98 0.74 -0.50 16 2 C 0.12 1.07 7.24 86.38 0.63 1.69 16 3 N -0.13 -2.55 3.94 -187.48 -0.74 -3.29 16 4 N -0.30 -6.73 12.01 -46.58 -0.56 -7.28 16 5 C 0.05 1.28 7.39 43.32 0.32 1.60 16 6 C -0.07 -1.36 10.00 71.24 0.71 -0.65 16 7 C -0.07 -1.93 7.21 42.25 0.30 -1.63 16 8 C 0.61 19.18 7.83 86.78 0.68 19.86 16 9 O -0.55 -20.30 15.20 -3.90 -0.06 -20.36 16 10 N -0.70 -20.74 5.55 -466.00 -2.59 -23.33 16 11 C 0.13 4.49 5.79 86.38 0.50 4.99 16 12 C 0.15 5.81 6.37 86.38 0.55 6.36 16 13 N -0.75 -38.20 5.60 -343.47 -1.92 -40.12 16 14 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 17 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 18 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 N -0.25 -5.97 11.84 -48.17 -0.57 -6.54 16 23 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.95 6.77 -2.39 -0.02 1.93 16 31 H 0.42 10.59 8.24 -92.71 -0.76 9.82 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.38 20.61 7.67 -92.71 -0.71 19.90 16 37 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -72.48 324.02 1.23 -71.25 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: -0.38 Total: 26.49 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.74 Total: 14.86 kcal Atomic # 7 Polarization: -134.06 SS G_CDS: -6.10 Total: -140.16 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -72.48 1.23 -71.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153752803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.885 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds