Wall clock time and date at job start Mon Mar 30 2020 00:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.35317 * 125.86956 * 2 1 4 4 C 1.35349 * 106.17446 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.75129 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47085 * 125.04878 * 5 4 3 7 7 C 1.50706 * 109.46565 * 180.02562 * 6 5 4 8 8 O 1.21271 * 120.00385 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99449 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99817 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47248 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.36933 * 120.00356 * 179.97438 * 12 11 10 14 14 H 1.08008 * 119.99722 * 359.97438 * 13 12 11 15 15 C 1.38809 * 120.00366 * 179.97438 * 13 12 11 16 16 N 1.31622 * 120.00005 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 359.97438 * 15 13 12 18 18 H 1.48492 * 109.47248 * 90.00430 * 17 15 13 19 19 H 1.48503 * 109.46964 * 210.00141 * 17 15 13 20 20 H 1.48501 * 109.47136 * 329.99849 * 17 15 13 21 21 N 1.33777 * 106.49799 * 0.02562 * 4 3 2 22 22 N 1.28634 * 108.88349 * 359.97438 * 21 4 3 23 23 H 1.09000 * 109.47415 * 270.01479 * 1 2 3 24 24 H 1.09005 * 109.47124 * 30.01074 * 1 2 3 25 25 H 1.09000 * 109.47717 * 150.01396 * 1 2 3 26 26 H 1.07995 * 126.91332 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.46679 * 245.04746 * 5 4 3 28 28 H 1.09003 * 109.46810 * 5.04527 * 5 4 3 29 29 H 1.08999 * 109.47254 * 299.99515 * 6 5 4 30 30 H 1.08993 * 109.47530 * 60.00129 * 6 5 4 31 31 H 0.96996 * 120.00334 * 359.97438 * 9 7 6 32 32 H 1.09001 * 109.47289 * 299.99832 * 10 9 7 33 33 H 1.09004 * 109.47544 * 59.99389 * 10 9 7 34 34 H 1.08999 * 109.47019 * 299.99402 * 11 10 9 35 35 H 1.08993 * 109.47449 * 59.99822 * 11 10 9 36 36 H 0.97002 * 119.99835 * 359.97438 * 12 11 10 37 37 H 0.97005 * 119.99917 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5321 0.6404 0.0006 5 6 4.7880 1.4734 0.0003 6 6 5.6706 1.0657 1.1816 7 6 6.9262 1.8992 1.1816 8 8 7.0984 2.7363 0.3212 9 7 7.8583 1.7134 2.1373 10 6 9.0786 2.5239 2.1376 11 6 9.9614 2.1162 3.3189 12 7 11.1820 2.9264 3.3189 13 6 12.1286 2.7384 4.2903 14 1 11.9751 1.9930 5.0568 15 6 13.2854 3.5056 4.2900 16 7 14.1955 3.3245 5.2235 17 14 13.5511 4.7942 2.9640 18 1 12.9876 6.0919 3.4148 19 1 15.0058 4.9484 2.7081 20 1 12.8715 4.3664 1.7148 21 7 3.4575 -0.6953 0.0003 22 7 2.2191 -1.0431 0.0002 23 1 -0.3634 0.0003 1.0276 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3634 -0.8901 -0.5136 26 1 1.9381 2.1281 0.0004 27 1 5.3306 1.3122 -0.9313 28 1 4.5249 2.5274 0.0899 29 1 5.1281 1.2269 2.1132 30 1 5.9337 0.0118 1.0920 31 1 7.7208 1.0436 2.8252 32 1 9.6213 2.3641 1.2059 33 1 8.8150 3.5777 2.2282 34 1 9.4186 2.2766 4.2504 35 1 10.2252 1.0626 3.2288 36 1 11.3196 3.5960 2.6307 37 1 15.0037 3.8609 5.2235 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153761536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:59 Heat of formation + Delta-G solvation = 39.991484 kcal Electronic energy + Delta-G solvation = -18854.199299 eV Core-core repulsion = 15667.982188 eV Total energy + Delta-G solvation = -3186.217111 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.19297 -40.73435 -37.49530 -36.09510 -35.47785 -34.41784 -33.44272 -31.39531 -29.75105 -28.65758 -26.33120 -24.79592 -23.10045 -23.00223 -22.03175 -21.11070 -19.81943 -18.30688 -17.75020 -17.51311 -17.00482 -16.91234 -16.30031 -15.91673 -15.69792 -15.52024 -15.12154 -14.68976 -14.49892 -14.06265 -13.96464 -13.56183 -13.38928 -13.15534 -13.12585 -12.70430 -12.57508 -12.54978 -12.26089 -12.07640 -11.82419 -11.63566 -11.03052 -11.01467 -10.89741 -10.12570 -10.08138 -9.35858 -8.04759 -5.40199 0.67056 1.39804 1.41806 1.48679 1.49470 1.60785 1.67275 2.18190 2.47406 3.26721 3.37160 3.68805 3.79349 3.86802 4.01374 4.07380 4.18143 4.22889 4.30325 4.36594 4.44357 4.57088 4.66303 4.69982 4.80616 5.04160 5.05404 5.11345 5.16221 5.27218 5.43584 5.71598 5.72805 6.18174 6.57429 7.03706 7.26919 7.52589 7.78267 7.96221 9.15943 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.061826 B = 0.002455 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.777227 B =11401.677094 C =11663.708433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.031 4.031 4 C -0.038 4.038 5 C -0.010 4.010 6 C -0.121 4.121 7 C 0.513 3.487 8 O -0.584 6.584 9 N -0.716 5.716 10 C 0.122 3.878 11 C 0.149 3.851 12 N -0.759 5.759 13 C -0.238 4.238 14 H 0.063 0.937 15 C -0.062 4.062 16 N -0.980 5.980 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.294 1.294 20 H -0.254 1.254 21 N -0.304 5.304 22 N -0.126 5.126 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.104 0.896 26 H 0.233 0.767 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.417 0.583 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.367 0.633 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.249 -3.833 -11.484 35.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.083 5.083 3 C -0.183 4.183 4 C -0.177 4.177 5 C -0.050 4.050 6 C -0.161 4.161 7 C 0.302 3.698 8 O -0.464 6.464 9 N -0.368 5.368 10 C -0.003 4.003 11 C 0.022 3.978 12 N -0.405 5.405 13 C -0.369 4.369 14 H 0.081 0.919 15 C -0.254 4.254 16 N -0.630 5.630 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.179 1.179 21 N -0.170 5.170 22 N -0.105 5.105 23 H 0.126 0.874 24 H 0.149 0.851 25 H 0.123 0.877 26 H 0.249 0.751 27 H 0.090 0.910 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.200 0.800 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -33.077 -4.933 -11.899 35.497 hybrid contribution 0.652 1.421 -0.092 1.566 sum -32.425 -3.512 -11.991 34.749 Atomic orbital electron populations 1.22736 0.69840 1.07735 1.06689 1.47669 1.11031 1.04304 1.45292 1.24033 0.89852 0.96237 1.08150 1.22209 0.96562 0.90926 1.07970 1.19519 0.89184 0.98043 0.98223 1.21534 0.92252 1.00580 1.01760 1.21189 0.85277 0.83281 0.80096 1.90686 1.79766 1.37246 1.38692 1.45806 1.19318 1.40526 1.31193 1.21211 0.85332 0.95413 0.98321 1.20844 0.86123 0.94730 0.96059 1.42554 1.20196 1.44988 1.32784 1.19014 0.97283 1.16241 1.04363 0.91945 1.25519 0.96590 1.02375 1.00912 1.69877 1.10913 1.44856 1.37352 0.85420 0.76905 0.79531 0.80023 1.20201 1.22049 1.17865 1.74993 1.10377 1.13669 1.17946 1.78237 0.96656 1.13748 1.21833 0.87409 0.85106 0.87728 0.75110 0.90962 0.88096 0.86665 0.87750 0.74657 0.92392 0.91891 0.94000 0.94376 0.80007 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.07 11.39 127.77 1.46 1.52 16 2 N -0.29 -3.56 3.74 -369.25 -1.38 -4.95 16 3 C -0.03 -0.34 11.54 83.49 0.96 0.62 16 4 C -0.04 -0.67 6.50 41.60 0.27 -0.40 16 5 C -0.01 -0.17 5.08 29.85 0.15 -0.02 16 6 C -0.12 -2.10 5.68 29.85 0.17 -1.93 16 7 C 0.51 12.63 7.83 87.66 0.69 13.32 16 8 O -0.58 -19.01 15.98 -3.00 -0.05 -19.06 16 9 N -0.72 -17.08 5.56 -463.05 -2.57 -19.66 16 10 C 0.12 3.75 5.79 86.38 0.50 4.25 16 11 C 0.15 5.38 6.37 86.38 0.55 5.93 16 12 N -0.76 -35.50 5.41 -343.46 -1.86 -37.36 16 13 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 14 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 15 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 16 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 17 Si 0.95 45.86 27.73 68.60 1.90 47.77 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 21 N -0.30 -7.29 12.40 -48.60 -0.60 -7.90 16 22 N -0.13 -2.70 13.16 37.02 0.49 -2.21 16 23 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.13 -0.69 8.14 -2.38 -0.02 -0.70 16 25 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.23 0.39 8.06 -2.91 -0.02 0.36 16 27 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.10 1.48 8.08 -2.39 -0.02 1.46 16 29 H 0.12 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.42 7.53 8.47 -92.71 -0.79 6.74 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.37 16.57 5.53 -92.71 -0.51 16.06 16 37 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -82.76 322.73 2.06 -80.70 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.27 Total: 17.83 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 6.09 Total: 7.36 kcal Atomic # 7 Polarization: -128.97 SS G_CDS: -5.62 Total: -134.60 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.77 kcal Total: -82.76 2.06 -80.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153761536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.694 kcal (2) G-P(sol) polarization free energy of solvation -82.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds