Wall clock time and date at job start Mon Mar 30 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46833 * 2 1 4 4 C 1.36933 * 120.00425 * 274.04462 * 3 2 1 5 5 H 1.08000 * 120.00237 * 174.71399 * 4 3 2 6 6 C 1.38809 * 119.99823 * 354.70551 * 4 3 2 7 7 N 1.31625 * 120.00039 * 31.38895 * 6 4 3 8 8 Si 1.86796 * 120.00229 * 211.38378 * 6 4 3 9 9 H 1.48510 * 109.47090 * 84.99724 * 8 6 4 10 10 H 1.48502 * 109.47642 * 204.99619 * 8 6 4 11 11 H 1.48496 * 109.47309 * 325.00204 * 8 6 4 12 12 C 1.46509 * 119.99832 * 94.04159 * 3 2 1 13 13 H 1.09000 * 109.47170 * 179.97438 * 12 3 2 14 14 C 1.53006 * 109.46789 * 60.00230 * 12 3 2 15 15 C 1.53000 * 109.47159 * 300.00298 * 12 3 2 16 16 N 1.46502 * 109.46723 * 304.99481 * 15 12 3 17 17 C 1.34780 * 119.99397 * 180.02562 * 16 15 12 18 18 O 1.21612 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.47232 * 119.99700 * 180.02562 * 17 16 15 20 20 C 1.37011 * 127.19169 * 180.02562 * 19 17 16 21 21 N 1.33320 * 106.37335 * 179.97438 * 20 19 17 22 22 N 1.28518 * 109.44051 * 359.97438 * 21 20 19 23 23 N 1.28714 * 110.63637 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.03115 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46752 * 299.99168 * 1 2 3 27 27 H 1.08991 * 109.47385 * 59.99713 * 1 2 3 28 28 H 1.09001 * 109.46752 * 240.00832 * 2 1 3 29 29 H 1.08991 * 109.47385 * 120.00287 * 2 1 3 30 30 H 0.96996 * 119.99696 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.46844 * 180.02562 * 14 12 3 32 32 H 1.09008 * 109.46590 * 299.99879 * 14 12 3 33 33 H 1.08996 * 109.47532 * 59.99473 * 14 12 3 34 34 H 1.09007 * 109.46784 * 184.99786 * 15 12 3 35 35 H 1.08996 * 109.47132 * 64.99346 * 15 12 3 36 36 H 0.97000 * 120.00413 * 0.02562 * 16 15 12 37 37 H 1.07994 * 126.80777 * 359.95683 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0547 -1.1829 5 1 2.4453 3.0984 -1.1787 6 6 1.9624 1.3959 -2.3873 7 7 1.0858 0.4168 -2.4608 8 14 2.9300 1.8989 -3.9038 9 1 4.2408 1.2008 -3.9088 10 1 2.1675 1.5286 -5.1231 11 1 3.1514 3.3672 -3.8853 12 6 2.3468 2.0421 1.2657 13 1 2.6911 3.0570 1.0670 14 6 3.4519 1.2593 1.9779 15 6 1.1020 2.0900 2.1541 16 7 0.0067 2.7348 1.4255 17 6 -1.1956 2.8890 2.0147 18 8 -1.3714 2.4924 3.1508 19 6 -2.2966 3.5365 1.2823 20 6 -3.5689 3.7682 1.7349 21 7 -4.2171 4.3743 0.7399 22 7 -3.4251 4.5175 -0.2620 23 7 -2.2623 4.0351 0.0063 24 1 -1.4973 4.0251 -0.5899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.9422 -0.0433 -3.3026 31 1 3.6959 1.7507 2.9196 32 1 3.1078 0.2442 2.1765 33 1 4.3386 1.2251 1.3450 34 1 1.3221 2.6589 3.0574 35 1 0.8102 1.0755 2.4256 36 1 0.1468 3.0507 0.5192 37 1 -3.9675 3.5107 2.7049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154134512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:41 Heat of formation + Delta-G solvation = 88.807742 kcal Electronic energy + Delta-G solvation = -21280.012664 eV Core-core repulsion = 18095.912385 eV Total energy + Delta-G solvation = -3184.100279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.24938 -39.38844 -37.17291 -34.30539 -33.40792 -32.30612 -31.21900 -30.31404 -28.58883 -26.33797 -24.03303 -23.72317 -22.66039 -21.92320 -20.74170 -19.49983 -18.72416 -17.12739 -16.52635 -16.26184 -15.85858 -15.48852 -14.65695 -14.26011 -14.12714 -13.99484 -13.16906 -12.80186 -12.64033 -12.33901 -12.11701 -12.04581 -11.62291 -11.31431 -11.22901 -10.92633 -10.85809 -10.76533 -10.69372 -10.43149 -10.03472 -9.97762 -9.78377 -9.47839 -9.44045 -8.77308 -8.39980 -7.19231 -6.02508 -3.23834 1.00155 2.35811 2.55670 3.21013 3.26814 3.31750 3.36439 3.39671 4.31515 4.43582 4.84503 5.04282 5.08184 5.23124 5.24188 5.37456 5.72818 5.90738 5.97318 6.01053 6.13162 6.18865 6.48843 6.53600 6.63677 6.67242 6.76573 6.84909 6.98221 7.06896 7.49620 7.66143 7.67573 7.94603 8.13444 8.24850 8.32226 9.03461 9.67489 10.12904 11.00420 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.007151 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.324192 B = 3914.837248 C = 4908.353356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.164 3.836 3 N -0.595 5.595 4 C -0.272 4.272 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.877 5.877 8 Si 0.880 3.120 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.069 0.931 14 C -0.158 4.158 15 C 0.104 3.896 16 N -0.693 5.693 17 C 0.588 3.412 18 O -0.532 6.532 19 C -0.055 4.055 20 C 0.022 3.978 21 N -0.277 5.277 22 N -0.052 5.052 23 N -0.367 5.367 24 H 0.456 0.544 25 H 0.016 0.984 26 H 0.018 0.982 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.008 0.992 30 H 0.254 0.746 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 3.931 6.667 7.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 N -0.317 5.317 4 C -0.400 4.400 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.521 5.521 8 Si 0.710 3.290 9 H -0.216 1.216 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.087 0.913 14 C -0.218 4.218 15 C -0.021 4.021 16 N -0.343 5.343 17 C 0.371 3.629 18 O -0.408 6.408 19 C -0.190 4.190 20 C -0.138 4.138 21 N -0.142 5.142 22 N -0.034 5.034 23 N -0.094 5.094 24 H 0.304 0.696 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.244 0.756 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.013 4.229 6.357 7.896 hybrid contribution 1.705 -0.325 -0.997 2.002 sum -0.308 3.904 5.359 6.637 Atomic orbital electron populations 1.22417 0.99225 0.98308 1.01021 1.20895 0.92393 0.84481 0.98277 1.44241 1.75781 1.11273 1.00426 1.19181 1.42589 0.94917 0.83291 0.90644 1.24715 0.98470 0.98132 0.97309 1.70265 1.30015 1.26413 1.25404 0.86652 0.81323 0.78010 0.83041 1.21551 1.22113 1.20799 1.20569 0.91072 0.96609 0.86597 0.91270 1.22180 0.99626 1.00645 0.99326 1.22155 0.87695 0.97541 0.94756 1.45805 1.10522 1.59188 1.18816 1.16761 0.81267 0.79260 0.85614 1.90817 1.82136 1.50551 1.17334 1.22526 0.99647 1.09225 0.87637 1.23822 0.89576 0.99544 1.00854 1.74944 1.24861 1.16551 0.97809 1.78191 0.88861 1.15680 1.20675 1.45680 1.13108 1.38500 1.12123 0.69617 0.96498 0.96264 0.89631 0.89756 0.97332 0.93526 0.93514 0.92863 0.92144 0.92140 0.91399 0.75634 0.78185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.27 37.16 0.34 -2.83 16 2 C 0.16 3.50 5.01 -4.04 -0.02 3.48 16 3 N -0.59 -12.03 1.92 -165.65 -0.32 -12.35 16 4 C -0.27 -6.13 9.38 -15.06 -0.14 -6.28 16 5 H 0.08 1.66 7.83 -52.49 -0.41 1.25 16 6 C 0.01 0.30 4.97 -17.43 -0.09 0.22 16 7 N -0.88 -21.79 8.40 55.49 0.47 -21.32 16 8 Si 0.88 19.44 29.65 -169.99 -5.04 14.40 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 12 C 0.16 2.66 2.87 -67.92 -0.19 2.46 16 13 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16 14 C -0.16 -2.35 9.18 37.16 0.34 -2.01 16 15 C 0.10 1.64 4.32 -4.04 -0.02 1.62 16 16 N -0.69 -10.79 3.99 -61.44 -0.24 -11.04 16 17 C 0.59 9.45 7.56 -12.60 -0.10 9.35 16 18 O -0.53 -9.81 16.92 5.27 0.09 -9.72 16 19 C -0.06 -0.81 7.17 -82.33 -0.59 -1.40 16 20 C 0.02 0.31 11.87 -17.35 -0.21 0.10 16 21 N -0.28 -4.30 12.35 30.47 0.38 -3.93 16 22 N -0.05 -0.79 13.35 60.35 0.81 0.01 16 23 N -0.37 -5.01 6.97 33.31 0.23 -4.77 16 24 H 0.46 5.34 8.32 -190.33 -1.58 3.76 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.38 4.84 -51.93 -0.25 0.12 16 27 H 0.09 2.01 6.30 -51.93 -0.33 1.69 16 28 H 0.08 2.07 5.84 -51.93 -0.30 1.76 16 29 H 0.01 0.17 6.43 -51.93 -0.33 -0.17 16 30 H 0.25 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.81 6.66 -51.92 -0.35 0.46 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.18 6.92 -51.93 -0.36 0.82 16 36 H 0.41 6.35 7.15 -40.82 -0.29 6.06 16 37 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -26.69 303.46 -5.59 -32.28 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.86 Total: 7.13 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.67 Total: 4.73 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 1.32 Total: -53.39 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.04 Total: 14.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.69 -5.59 -32.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154134512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.085 kcal (2) G-P(sol) polarization free energy of solvation -26.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds