Wall clock time and date at job start Mon Mar 30 2020 00:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46833 * 2 1 4 4 C 1.36933 * 120.00425 * 274.04462 * 3 2 1 5 5 H 1.08000 * 120.00237 * 174.71399 * 4 3 2 6 6 C 1.38809 * 119.99823 * 354.70551 * 4 3 2 7 7 N 1.31625 * 120.00039 * 31.38895 * 6 4 3 8 8 Si 1.86796 * 120.00229 * 211.38378 * 6 4 3 9 9 H 1.48510 * 109.47090 * 84.99724 * 8 6 4 10 10 H 1.48502 * 109.47642 * 204.99619 * 8 6 4 11 11 H 1.48496 * 109.47309 * 325.00204 * 8 6 4 12 12 C 1.46509 * 119.99832 * 94.04159 * 3 2 1 13 13 H 1.09000 * 109.47170 * 179.97438 * 12 3 2 14 14 C 1.53006 * 109.46789 * 60.00230 * 12 3 2 15 15 C 1.53000 * 109.47159 * 300.00298 * 12 3 2 16 16 N 1.46502 * 109.46723 * 304.99481 * 15 12 3 17 17 C 1.34780 * 119.99397 * 180.02562 * 16 15 12 18 18 O 1.21612 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.47232 * 119.99700 * 180.02562 * 17 16 15 20 20 C 1.37011 * 127.19169 * 180.02562 * 19 17 16 21 21 N 1.33320 * 106.37335 * 179.97438 * 20 19 17 22 22 N 1.28518 * 109.44051 * 359.97438 * 21 20 19 23 23 N 1.28714 * 110.63637 * 359.97438 * 22 21 20 24 24 H 0.97001 * 126.03115 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46752 * 299.99168 * 1 2 3 27 27 H 1.08991 * 109.47385 * 59.99713 * 1 2 3 28 28 H 1.09001 * 109.46752 * 240.00832 * 2 1 3 29 29 H 1.08991 * 109.47385 * 120.00287 * 2 1 3 30 30 H 0.96996 * 119.99696 * 179.97438 * 7 6 4 31 31 H 1.08992 * 109.46844 * 180.02562 * 14 12 3 32 32 H 1.09008 * 109.46590 * 299.99879 * 14 12 3 33 33 H 1.08996 * 109.47532 * 59.99473 * 14 12 3 34 34 H 1.09007 * 109.46784 * 184.99786 * 15 12 3 35 35 H 1.08996 * 109.47132 * 64.99346 * 15 12 3 36 36 H 0.97000 * 120.00413 * 0.02562 * 16 15 12 37 37 H 1.07994 * 126.80777 * 359.95683 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1677 2.0547 -1.1829 5 1 2.4453 3.0984 -1.1787 6 6 1.9624 1.3959 -2.3873 7 7 1.0858 0.4168 -2.4608 8 14 2.9300 1.8989 -3.9038 9 1 4.2408 1.2008 -3.9088 10 1 2.1675 1.5286 -5.1231 11 1 3.1514 3.3672 -3.8853 12 6 2.3468 2.0421 1.2657 13 1 2.6911 3.0570 1.0670 14 6 3.4519 1.2593 1.9779 15 6 1.1020 2.0900 2.1541 16 7 0.0067 2.7348 1.4255 17 6 -1.1956 2.8890 2.0147 18 8 -1.3714 2.4924 3.1508 19 6 -2.2966 3.5365 1.2823 20 6 -3.5689 3.7682 1.7349 21 7 -4.2171 4.3743 0.7399 22 7 -3.4251 4.5175 -0.2620 23 7 -2.2623 4.0351 0.0063 24 1 -1.4973 4.0251 -0.5899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.9422 -0.0433 -3.3026 31 1 3.6959 1.7507 2.9196 32 1 3.1078 0.2442 2.1765 33 1 4.3386 1.2251 1.3450 34 1 1.3221 2.6589 3.0574 35 1 0.8102 1.0755 2.4256 36 1 0.1468 3.0507 0.5192 37 1 -3.9675 3.5107 2.7049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154134512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:41 Heat of formation + Delta-G solvation = 71.445832 kcal Electronic energy + Delta-G solvation = -21280.765533 eV Core-core repulsion = 18095.912385 eV Total energy + Delta-G solvation = -3184.853148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.40722 -40.70704 -38.67276 -35.72712 -34.66846 -33.72921 -32.45141 -31.94540 -30.23150 -27.57278 -25.67574 -25.01465 -23.87491 -23.45283 -21.95738 -20.93533 -20.01207 -18.77650 -17.75642 -17.46768 -17.20907 -17.04882 -16.13223 -15.58809 -15.53053 -15.31024 -14.76115 -14.32678 -14.13500 -13.72410 -13.54953 -13.30357 -13.17456 -12.78616 -12.57938 -12.49101 -12.42342 -12.37011 -12.11466 -11.84348 -11.62255 -11.40876 -11.31980 -11.13681 -10.66970 -10.20468 -10.03644 -8.89961 -7.83347 -5.01771 -0.17450 1.18949 1.44617 1.49190 1.58588 1.60015 1.97170 2.08100 2.55284 3.27062 3.30236 3.63196 3.69272 3.93279 4.06912 4.10899 4.40561 4.63231 4.69050 4.80593 4.84582 4.94119 5.01373 5.13361 5.26459 5.28958 5.34244 5.38795 5.54700 5.60451 5.70710 5.89745 6.17468 6.35855 6.39402 6.97401 7.15739 7.24659 7.97294 8.39165 9.18374 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.007151 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.324192 B = 3914.837248 C = 4908.353356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 N -0.600 5.600 4 C -0.256 4.256 5 H 0.085 0.915 6 C -0.031 4.031 7 N -0.898 5.898 8 Si 0.926 3.074 9 H -0.302 1.302 10 H -0.310 1.310 11 H -0.274 1.274 12 C 0.158 3.842 13 H 0.079 0.921 14 C -0.151 4.151 15 C 0.111 3.889 16 N -0.691 5.691 17 C 0.594 3.406 18 O -0.555 6.555 19 C -0.062 4.062 20 C 0.028 3.972 21 N -0.293 5.293 22 N -0.062 5.062 23 N -0.354 5.354 24 H 0.463 0.537 25 H 0.013 0.987 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.023 0.977 30 H 0.243 0.757 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.408 0.592 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 4.870 7.982 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 N -0.323 5.323 4 C -0.385 4.385 5 H 0.103 0.897 6 C -0.227 4.227 7 N -0.544 5.544 8 Si 0.757 3.243 9 H -0.230 1.230 10 H -0.238 1.238 11 H -0.199 1.199 12 C 0.051 3.949 13 H 0.097 0.903 14 C -0.210 4.210 15 C -0.015 4.015 16 N -0.340 5.340 17 C 0.377 3.623 18 O -0.433 6.433 19 C -0.198 4.198 20 C -0.132 4.132 21 N -0.158 5.158 22 N -0.044 5.044 23 N -0.083 5.083 24 H 0.313 0.687 25 H 0.033 0.967 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.244 0.756 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -1.501 5.203 7.678 9.395 hybrid contribution 1.583 -0.591 -1.340 2.157 sum 0.082 4.612 6.337 7.838 Atomic orbital electron populations 1.22220 0.99084 0.97887 1.00119 1.20682 0.92358 0.85100 0.97341 1.44328 1.75728 1.10895 1.01325 1.19449 1.40011 0.95167 0.83871 0.89735 1.25119 0.99650 0.98998 0.98971 1.70387 1.31430 1.27743 1.24872 0.85913 0.79544 0.77849 0.80947 1.22983 1.23808 1.19873 1.20778 0.91910 0.96999 0.85211 0.90335 1.22084 0.98283 1.00332 1.00342 1.22070 0.87023 0.97193 0.95183 1.45799 1.10541 1.58915 1.18768 1.16794 0.81395 0.78798 0.85266 1.90807 1.82518 1.51668 1.18332 1.22393 0.99539 1.09896 0.87957 1.24251 0.89234 0.98390 1.01363 1.74949 1.25283 1.17296 0.98225 1.78169 0.89293 1.16066 1.20884 1.45663 1.13014 1.37663 1.11949 0.68729 0.96746 0.95322 0.92036 0.93007 0.95866 0.94695 0.90437 0.93433 0.93057 0.90130 0.92762 0.75586 0.75984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 9.27 71.98 0.67 -4.89 16 2 C 0.17 7.13 5.01 86.38 0.43 7.56 16 3 N -0.60 -23.32 1.92 -678.01 -1.30 -24.62 16 4 C -0.26 -11.18 9.38 84.03 0.79 -10.39 16 5 H 0.08 3.52 7.83 -2.91 -0.02 3.49 16 6 C -0.03 -1.47 4.97 84.86 0.42 -1.05 16 7 N -0.90 -45.14 8.40 21.65 0.18 -44.96 16 8 Si 0.93 40.07 29.65 68.60 2.03 42.11 16 9 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.31 -14.13 7.11 99.48 0.71 -13.42 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 C 0.16 4.81 2.87 44.99 0.13 4.94 16 13 H 0.08 2.28 7.78 -2.39 -0.02 2.26 16 14 C -0.15 -4.03 9.18 71.98 0.66 -3.37 16 15 C 0.11 3.18 4.32 86.38 0.37 3.55 16 16 N -0.69 -20.07 3.99 -466.56 -1.86 -21.93 16 17 C 0.59 17.95 7.56 86.61 0.65 18.60 16 18 O -0.56 -19.38 16.92 -4.07 -0.07 -19.45 16 19 C -0.06 -1.73 7.17 40.41 0.29 -1.44 16 20 C 0.03 0.74 11.87 84.18 1.00 1.74 16 21 N -0.29 -8.72 12.35 -57.50 -0.71 -9.43 16 22 N -0.06 -1.82 13.35 37.02 0.49 -1.33 16 23 N -0.35 -9.19 6.97 -48.52 -0.34 -9.53 16 24 H 0.46 10.27 8.32 -219.90 -1.83 8.44 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.03 1.10 4.84 -2.39 -0.01 1.09 16 27 H 0.06 2.88 6.30 -2.39 -0.02 2.87 16 28 H 0.05 2.55 5.84 -2.39 -0.01 2.54 16 29 H 0.02 0.90 6.43 -2.39 -0.02 0.88 16 30 H 0.24 12.44 8.31 -92.71 -0.77 11.67 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.32 6.66 -2.38 -0.02 1.31 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.05 1.75 6.92 -2.39 -0.02 1.73 16 36 H 0.41 11.93 7.15 -92.71 -0.66 11.26 16 37 H 0.22 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -55.43 303.46 2.48 -52.95 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -1.37 Total: 20.93 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 5.42 Total: 15.26 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -3.53 Total: -111.79 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.07 Total: -19.45 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.11 kcal Total: -55.43 2.48 -52.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154134512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.396 kcal (2) G-P(sol) polarization free energy of solvation -55.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds