Wall clock time and date at job start Mon Mar 30 2020 00:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47441 * 2 1 4 4 C 1.36940 * 119.99883 * 275.73763 * 3 2 1 5 5 H 1.07998 * 120.00161 * 33.26854 * 4 3 2 6 6 C 1.38813 * 120.00038 * 213.27007 * 4 3 2 7 7 N 1.31620 * 119.99640 * 17.25899 * 6 4 3 8 8 Si 1.86801 * 120.00143 * 197.26471 * 6 4 3 9 9 H 1.48498 * 109.46969 * 59.99791 * 8 6 4 10 10 H 1.48501 * 109.47126 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46659 * 299.99661 * 8 6 4 12 12 C 1.46500 * 120.00126 * 95.73057 * 3 2 1 13 13 H 1.08994 * 109.47132 * 180.08802 * 12 3 2 14 14 C 1.53004 * 109.46859 * 60.08902 * 12 3 2 15 15 C 1.52998 * 109.47198 * 300.09063 * 12 3 2 16 16 N 1.46498 * 109.47197 * 304.99857 * 15 12 3 17 17 C 1.34772 * 120.00163 * 180.02562 * 16 15 12 18 18 O 1.21557 * 120.00257 * 359.97438 * 17 16 15 19 19 C 1.47872 * 119.99947 * 180.27602 * 17 16 15 20 20 N 1.34548 * 126.05090 * 359.40725 * 19 17 16 21 21 C 1.30871 * 107.26955 * 179.83599 * 20 19 17 22 22 N 1.34581 * 107.62275 * 0.42911 * 21 20 19 23 23 H 0.97005 * 125.74225 * 179.72885 * 22 21 20 24 24 N 1.28853 * 108.50666 * 359.72584 * 22 21 20 25 25 H 1.09000 * 109.46936 * 59.99740 * 1 2 3 26 26 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46747 * 299.99994 * 1 2 3 28 28 H 1.09005 * 109.47115 * 239.99894 * 2 1 3 29 29 H 1.09003 * 109.47383 * 120.00515 * 2 1 3 30 30 H 0.97002 * 119.99452 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47112 * 180.02562 * 14 12 3 32 32 H 1.09002 * 109.46938 * 300.00151 * 14 12 3 33 33 H 1.08998 * 109.46920 * 59.99540 * 14 12 3 34 34 H 1.09002 * 109.46939 * 184.99754 * 15 12 3 35 35 H 1.08997 * 109.47055 * 64.99624 * 15 12 3 36 36 H 0.97001 * 119.99795 * 359.97438 * 16 15 12 37 37 H 1.07995 * 126.18360 * 180.12108 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1501 2.9986 -1.3440 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7149 9 1 1.8243 5.0895 -2.5331 10 1 4.2444 5.1372 -2.6755 11 1 2.9808 3.5678 -4.0256 12 6 2.3821 2.0296 1.2624 13 1 2.7191 3.0470 1.0643 14 6 3.5078 1.2412 1.9348 15 6 1.1631 2.0668 2.1863 16 7 0.0467 2.7173 1.4959 17 6 -1.1385 2.8639 2.1205 18 8 -1.2813 2.4559 3.2566 19 6 -2.2671 3.5151 1.4214 20 7 -2.2429 4.0138 0.1720 21 6 -3.4331 4.4981 -0.0761 22 7 -4.1877 4.3073 1.0218 23 1 -5.1154 4.5714 1.1247 24 7 -3.4704 3.7145 1.9130 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8964 3.6435 -0.6478 31 1 3.7781 1.7233 2.8743 32 1 3.1707 0.2237 2.1328 33 1 4.3762 1.2146 1.2766 34 1 1.4082 2.6268 3.0887 35 1 0.8802 1.0492 2.4557 36 1 0.1608 3.0433 0.5894 37 1 -3.7506 4.9705 -0.9940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155924393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:44 Heat of formation + Delta-G solvation = 74.163052 kcal Electronic energy + Delta-G solvation = -21207.118501 eV Core-core repulsion = 18022.383180 eV Total energy + Delta-G solvation = -3184.735321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.40625 -39.01751 -36.81602 -33.85362 -33.25691 -31.79669 -31.38038 -30.90625 -28.11405 -26.20581 -23.87758 -23.45144 -22.86450 -21.60263 -19.96175 -19.22431 -18.79369 -17.06012 -16.54240 -16.24366 -15.73491 -14.94354 -14.64450 -14.49257 -13.87156 -13.65766 -13.08460 -12.62837 -12.27013 -12.13576 -12.06958 -11.77012 -11.45021 -10.98939 -10.89936 -10.71709 -10.68142 -10.63876 -10.43893 -10.25578 -10.01933 -9.74377 -9.70067 -9.57199 -9.38038 -8.44452 -8.35806 -6.59958 -5.80815 -3.28769 1.48189 2.22253 2.56931 3.39684 3.45423 3.47928 3.52630 3.71102 4.27868 4.50071 4.72989 5.05156 5.34068 5.46407 5.93226 6.02597 6.12641 6.22069 6.28163 6.32119 6.43760 6.53631 6.60361 6.66473 6.67419 6.74510 6.88805 6.98580 7.06017 7.24217 7.53597 7.62639 7.85472 7.91351 8.26035 8.50733 8.70067 9.23510 9.84866 10.41605 11.26042 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.007260 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.490184 B = 3855.918232 C = 4731.749623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.258 4.258 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.293 1.293 11 H -0.284 1.284 12 C 0.176 3.824 13 H 0.101 0.899 14 C -0.143 4.143 15 C 0.101 3.899 16 N -0.675 5.675 17 C 0.601 3.399 18 O -0.539 6.539 19 C 0.157 3.843 20 N -0.473 5.473 21 C 0.192 3.808 22 N -0.407 5.407 23 H 0.449 0.551 24 N -0.258 5.258 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.254 0.746 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.422 0.578 37 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.698 2.579 0.919 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.303 5.303 4 C -0.388 4.388 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.219 1.219 11 H -0.210 1.210 12 C 0.068 3.932 13 H 0.119 0.881 14 C -0.203 4.203 15 C -0.024 4.024 16 N -0.327 5.327 17 C 0.382 3.618 18 O -0.415 6.415 19 C -0.124 4.124 20 N -0.199 5.199 21 C -0.106 4.106 22 N -0.130 5.130 23 H 0.295 0.705 24 N -0.097 5.097 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.310 2.125 2.135 12.673 hybrid contribution -0.817 1.203 -1.432 2.041 sum -13.127 3.328 0.703 13.560 Atomic orbital electron populations 1.22447 1.00058 0.98842 1.01612 1.20756 0.91626 0.87421 0.98725 1.43863 1.75922 1.08270 1.02253 1.19041 1.08361 1.18111 0.93294 0.91889 1.25128 0.94533 1.01308 0.97880 1.69998 1.07885 1.36027 1.39706 0.86464 0.77005 0.81731 0.82137 1.20680 1.21859 1.20991 1.20511 0.88739 0.99715 0.84203 0.88102 1.22015 1.01065 0.97938 0.99242 1.22307 0.87758 0.96375 0.95977 1.45749 1.09739 1.57616 1.19580 1.16367 0.81197 0.79369 0.84857 1.90780 1.82779 1.50414 1.17527 1.24071 0.93499 1.04254 0.90563 1.71436 1.20178 1.14165 1.14084 1.26646 0.87458 1.01622 0.94874 1.45262 1.14836 1.42416 1.10454 0.70489 1.74350 1.04823 1.13647 1.16923 0.93354 0.94964 0.93149 0.94083 0.94481 0.93589 0.94791 0.95108 0.90221 0.92508 0.92428 0.73953 0.75579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.87 37.16 0.37 -2.87 16 2 C 0.14 2.92 5.67 -4.04 -0.02 2.90 16 3 N -0.58 -13.37 1.85 -165.66 -0.31 -13.67 16 4 C -0.26 -6.57 9.26 -15.06 -0.14 -6.71 16 5 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -24.00 10.60 55.49 0.59 -23.41 16 8 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.18 3.85 1.92 -67.93 -0.13 3.71 16 13 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 14 C -0.14 -2.95 9.05 37.16 0.34 -2.61 16 15 C 0.10 2.01 4.34 -4.04 -0.02 2.00 16 16 N -0.68 -13.46 3.98 -61.24 -0.24 -13.71 16 17 C 0.60 12.08 7.60 -12.32 -0.09 11.98 16 18 O -0.54 -12.04 17.09 5.32 0.09 -11.95 16 19 C 0.16 2.78 7.96 -156.35 -1.24 1.54 16 20 N -0.47 -7.47 11.09 -12.37 -0.14 -7.61 16 21 C 0.19 1.95 13.14 -90.48 -1.19 0.76 16 22 N -0.41 -3.95 6.93 29.56 0.20 -3.75 16 23 H 0.45 2.09 8.96 -190.20 -1.71 0.38 16 24 N -0.26 -3.98 12.30 32.07 0.39 -3.59 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.00 4.99 -51.93 -0.26 0.74 16 28 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.04 0.73 6.45 -51.93 -0.33 0.40 16 30 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.58 6.67 -51.93 -0.35 0.24 16 33 H 0.08 1.86 7.39 -51.93 -0.38 1.47 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.16 7.05 -51.93 -0.37 0.79 16 36 H 0.42 8.87 7.61 -40.82 -0.31 8.56 16 37 H 0.23 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -32.05 308.48 -8.11 -40.16 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.10 Total: 6.23 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -2.22 Total: 10.91 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.50 Total: -65.74 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.05 -8.11 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155924393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.319 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds