Wall clock time and date at job start Mon Mar 30 2020 00:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47441 * 2 1 4 4 C 1.36940 * 119.99883 * 275.73763 * 3 2 1 5 5 H 1.07998 * 120.00161 * 33.26854 * 4 3 2 6 6 C 1.38813 * 120.00038 * 213.27007 * 4 3 2 7 7 N 1.31620 * 119.99640 * 17.25899 * 6 4 3 8 8 Si 1.86801 * 120.00143 * 197.26471 * 6 4 3 9 9 H 1.48498 * 109.46969 * 59.99791 * 8 6 4 10 10 H 1.48501 * 109.47126 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46659 * 299.99661 * 8 6 4 12 12 C 1.46500 * 120.00126 * 95.73057 * 3 2 1 13 13 H 1.08994 * 109.47132 * 180.08802 * 12 3 2 14 14 C 1.53004 * 109.46859 * 60.08902 * 12 3 2 15 15 C 1.52998 * 109.47198 * 300.09063 * 12 3 2 16 16 N 1.46498 * 109.47197 * 304.99857 * 15 12 3 17 17 C 1.34772 * 120.00163 * 180.02562 * 16 15 12 18 18 O 1.21557 * 120.00257 * 359.97438 * 17 16 15 19 19 C 1.47872 * 119.99947 * 180.27602 * 17 16 15 20 20 N 1.34548 * 126.05090 * 359.40725 * 19 17 16 21 21 C 1.30871 * 107.26955 * 179.83599 * 20 19 17 22 22 N 1.34581 * 107.62275 * 0.42911 * 21 20 19 23 23 H 0.97005 * 125.74225 * 179.72885 * 22 21 20 24 24 N 1.28853 * 108.50666 * 359.72584 * 22 21 20 25 25 H 1.09000 * 109.46936 * 59.99740 * 1 2 3 26 26 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46747 * 299.99994 * 1 2 3 28 28 H 1.09005 * 109.47115 * 239.99894 * 2 1 3 29 29 H 1.09003 * 109.47383 * 120.00515 * 2 1 3 30 30 H 0.97002 * 119.99452 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47112 * 180.02562 * 14 12 3 32 32 H 1.09002 * 109.46938 * 300.00151 * 14 12 3 33 33 H 1.08998 * 109.46920 * 59.99540 * 14 12 3 34 34 H 1.09002 * 109.46939 * 184.99754 * 15 12 3 35 35 H 1.08997 * 109.47055 * 64.99624 * 15 12 3 36 36 H 0.97001 * 119.99795 * 359.97438 * 16 15 12 37 37 H 1.07995 * 126.18360 * 180.12108 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1501 2.9986 -1.3440 7 7 4.1871 2.9917 -0.5334 8 14 3.0446 4.2630 -2.7149 9 1 1.8243 5.0895 -2.5331 10 1 4.2444 5.1372 -2.6755 11 1 2.9808 3.5678 -4.0256 12 6 2.3821 2.0296 1.2624 13 1 2.7191 3.0470 1.0643 14 6 3.5078 1.2412 1.9348 15 6 1.1631 2.0668 2.1863 16 7 0.0467 2.7173 1.4959 17 6 -1.1385 2.8639 2.1205 18 8 -1.2813 2.4559 3.2566 19 6 -2.2671 3.5151 1.4214 20 7 -2.2429 4.0138 0.1720 21 6 -3.4331 4.4981 -0.0761 22 7 -4.1877 4.3073 1.0218 23 1 -5.1154 4.5714 1.1247 24 7 -3.4704 3.7145 1.9130 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.8964 3.6435 -0.6478 31 1 3.7781 1.7233 2.8743 32 1 3.1707 0.2237 2.1328 33 1 4.3762 1.2146 1.2766 34 1 1.4082 2.6268 3.0887 35 1 0.8802 1.0492 2.4557 36 1 0.1608 3.0433 0.5894 37 1 -3.7506 4.9705 -0.9940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155924393.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:43 Heat of formation + Delta-G solvation = 52.739555 kcal Electronic energy + Delta-G solvation = -21208.047493 eV Core-core repulsion = 18022.383180 eV Total energy + Delta-G solvation = -3185.664313 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.42986 -40.58948 -38.54805 -35.37808 -34.47313 -33.66037 -32.71104 -32.30232 -29.90831 -27.72168 -25.75389 -24.83962 -23.80492 -23.26858 -21.34447 -20.94819 -19.87147 -18.75433 -18.00088 -17.36480 -17.17161 -16.65903 -16.32089 -15.79329 -15.49094 -15.31552 -14.71226 -14.29836 -13.95484 -13.76324 -13.48036 -13.16094 -13.15220 -12.74308 -12.69177 -12.48697 -12.38453 -12.05735 -11.84309 -11.74147 -11.53457 -11.33987 -11.31440 -11.13839 -10.77678 -10.37539 -9.95593 -8.48342 -7.77185 -5.26584 0.31727 1.19835 1.54358 1.57408 1.62493 1.63773 2.30548 2.35179 2.59932 3.21186 3.37356 3.63832 3.72430 4.06521 4.26338 4.47768 4.57875 4.68921 4.83549 4.87661 4.91852 4.96851 4.99767 5.08903 5.24846 5.30501 5.34577 5.44502 5.61053 5.73577 5.79971 5.90847 5.99389 6.52198 6.57455 7.00796 7.17845 7.29655 7.97394 8.49344 9.26742 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.007260 C = 0.005916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.490184 B = 3855.918232 C = 4731.749623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.058 0.942 6 C -0.032 4.032 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.276 1.276 10 H -0.300 1.300 11 H -0.282 1.282 12 C 0.181 3.819 13 H 0.070 0.930 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.675 5.675 17 C 0.601 3.399 18 O -0.571 6.571 19 C 0.126 3.874 20 N -0.516 5.516 21 C 0.219 3.781 22 N -0.381 5.381 23 H 0.472 0.528 24 N -0.275 5.275 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.248 0.752 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 3.037 0.171 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.075 0.925 6 C -0.229 4.229 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.227 1.227 11 H -0.208 1.208 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.193 4.193 15 C -0.013 4.013 16 N -0.325 5.325 17 C 0.384 3.616 18 O -0.449 6.449 19 C -0.154 4.154 20 N -0.242 5.242 21 C -0.078 4.078 22 N -0.107 5.107 23 H 0.324 0.676 24 N -0.116 5.116 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges -14.422 2.583 1.382 14.716 hybrid contribution -0.304 1.075 -1.237 1.667 sum -14.726 3.657 0.145 15.174 Atomic orbital electron populations 1.22254 0.98497 1.00065 1.00566 1.20830 0.92660 0.86232 0.98842 1.43973 1.76079 1.09171 1.01993 1.19165 1.07719 1.18144 0.93862 0.92467 1.25681 0.94496 1.02876 0.99833 1.70129 1.08312 1.36406 1.41070 0.85601 0.76530 0.79745 0.80057 1.20233 1.22659 1.20824 1.20370 0.89769 0.98168 0.84293 0.91149 1.21868 0.99387 0.98807 0.99214 1.22098 0.87108 0.96584 0.95515 1.45689 1.09947 1.57647 1.19194 1.16656 0.81659 0.78790 0.84545 1.90741 1.83441 1.51876 1.18820 1.23525 0.93543 1.06585 0.91740 1.71371 1.23315 1.15926 1.13617 1.27625 0.85549 0.98868 0.95789 1.45230 1.15563 1.40491 1.09416 0.67631 1.74230 1.04562 1.14227 1.18615 0.94454 0.92562 0.94023 0.94847 0.93403 0.94275 0.92976 0.93692 0.93155 0.92032 0.92300 0.74551 0.70006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.87 71.98 0.71 -4.99 16 2 C 0.14 5.70 5.67 86.38 0.49 6.19 16 3 N -0.59 -27.19 1.85 -678.03 -1.25 -28.44 16 4 C -0.26 -13.20 9.26 84.03 0.78 -12.42 16 5 H 0.06 2.95 7.89 -2.91 -0.02 2.93 16 6 C -0.03 -1.65 4.85 84.86 0.41 -1.24 16 7 N -0.91 -50.01 10.60 21.65 0.23 -49.78 16 8 Si 0.95 42.93 29.59 68.60 2.03 44.96 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.18 7.98 1.92 44.99 0.09 8.07 16 13 H 0.07 3.57 6.04 -2.39 -0.01 3.56 16 14 C -0.13 -5.48 9.05 71.98 0.65 -4.82 16 15 C 0.11 4.48 4.34 86.38 0.37 4.85 16 16 N -0.67 -27.09 3.98 -465.95 -1.86 -28.95 16 17 C 0.60 24.27 7.60 86.80 0.66 24.93 16 18 O -0.57 -25.72 17.09 -3.90 -0.07 -25.79 16 19 C 0.13 4.37 7.96 137.13 1.09 5.46 16 20 N -0.52 -15.41 11.09 -193.04 -2.14 -17.55 16 21 C 0.22 3.64 13.14 180.30 2.37 6.00 16 22 N -0.38 -6.19 6.93 -60.38 -0.42 -6.61 16 23 H 0.47 2.58 8.96 -219.79 -1.97 0.61 16 24 N -0.27 -8.05 12.30 -52.44 -0.65 -8.69 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.61 4.99 -2.39 -0.01 1.59 16 28 H 0.03 1.40 8.09 -2.38 -0.02 1.38 16 29 H 0.05 1.83 6.45 -2.39 -0.02 1.82 16 30 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.68 6.67 -2.39 -0.02 1.66 16 33 H 0.05 2.36 7.39 -2.39 -0.02 2.35 16 34 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.06 2.33 7.05 -2.39 -0.02 2.32 16 36 H 0.42 17.73 7.61 -92.71 -0.71 17.02 16 37 H 0.28 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -70.89 308.48 1.94 -68.95 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -1.56 Total: 19.87 kcal Atomic # 6 Polarization: 24.41 SS G_CDS: 7.62 Total: 32.03 kcal Atomic # 7 Polarization: -133.94 SS G_CDS: -6.08 Total: -140.03 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.07 Total: -25.79 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.89 1.94 -68.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155924393.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.690 kcal (2) G-P(sol) polarization free energy of solvation -70.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds