Wall clock time and date at job start Mon Mar 30 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39900 * 125.74705 * 2 1 4 4 C 1.30283 * 109.23055 * 180.02562 * 3 2 1 5 5 C 1.41484 * 108.19215 * 359.97438 * 4 3 2 6 6 C 1.46771 * 126.52293 * 180.02562 * 5 4 3 7 7 O 1.21684 * 120.00415 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99851 * 359.97438 * 6 5 4 9 9 C 1.46491 * 120.00327 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47256 * 179.97438 * 9 8 6 11 11 C 1.53000 * 109.47072 * 179.97438 * 10 9 8 12 12 N 1.46506 * 109.47182 * 179.97438 * 11 10 9 13 13 C 1.36935 * 119.99850 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00461 * 0.02562 * 13 12 11 15 15 C 1.38817 * 119.99718 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99730 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 120.00056 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.46945 * 90.00365 * 17 15 13 19 19 H 1.48497 * 109.47094 * 210.00369 * 17 15 13 20 20 H 1.48494 * 109.46936 * 330.00541 * 17 15 13 21 21 C 1.34843 * 125.74700 * 180.02562 * 2 1 3 22 22 N 1.38012 * 126.44466 * 0.24985 * 21 2 1 23 23 H 1.09000 * 109.47059 * 269.98516 * 1 2 3 24 24 H 1.09007 * 109.47099 * 29.97993 * 1 2 3 25 25 H 1.08992 * 109.47218 * 149.98037 * 1 2 3 26 26 H 1.07997 * 125.90245 * 180.02562 * 4 3 2 27 27 H 0.96999 * 119.99510 * 359.97438 * 8 6 5 28 28 H 1.09004 * 109.46957 * 299.99854 * 9 8 6 29 29 H 1.08997 * 109.47389 * 59.99184 * 9 8 6 30 30 H 1.08991 * 109.47215 * 299.99701 * 10 9 8 31 31 H 1.08999 * 109.47249 * 60.00117 * 10 9 8 32 32 H 1.09004 * 109.47436 * 300.00179 * 11 10 9 33 33 H 1.09003 * 109.47311 * 60.00287 * 11 10 9 34 34 H 0.96996 * 119.99734 * 0.02562 * 12 11 10 35 35 H 0.96999 * 119.99725 * 179.97438 * 16 15 13 36 36 H 0.96998 * 119.99770 * 179.68279 * 22 21 2 37 37 H 0.96995 * 120.00029 * 359.68672 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2823 1.1354 0.0000 4 6 3.5314 0.7650 -0.0006 5 6 3.5728 -0.6492 -0.0003 6 6 4.7773 -1.4878 -0.0003 7 8 4.6745 -2.7003 -0.0005 8 7 5.9973 -0.9149 -0.0009 9 6 7.1996 -1.7519 -0.0014 10 6 8.4423 -0.8594 -0.0028 11 6 9.6980 -1.7335 -0.0026 12 7 10.8880 -0.8790 -0.0045 13 6 12.1358 -1.4429 -0.0053 14 1 12.2428 -2.5176 -0.0049 15 6 13.2633 -0.6331 -0.0066 16 7 14.4627 -1.1751 -0.0068 17 14 13.0783 1.2257 -0.0080 18 1 13.0302 1.7194 1.3917 19 1 14.2354 1.8378 -0.7092 20 1 11.8223 1.5976 -0.7075 21 6 2.2528 -1.0944 -0.0005 22 7 1.8307 -2.4084 -0.0059 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3634 0.8902 -0.5136 25 1 -0.3633 -0.8897 -0.5141 26 1 4.3873 1.4237 -0.0003 27 1 6.0791 0.0516 -0.0018 28 1 7.2046 -2.3810 0.8887 29 1 7.2038 -2.3814 -0.8912 30 1 8.4371 -0.2306 -0.8930 31 1 8.4384 -0.2297 0.8869 32 1 9.7031 -2.3622 0.8879 33 1 9.7022 -2.3636 -0.8921 34 1 10.7919 0.0862 -0.0053 35 1 15.2506 -0.6093 -0.0081 36 1 2.4822 -3.1270 -0.0104 37 1 0.8826 -2.6132 -0.0053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156937287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:52 Heat of formation + Delta-G solvation = 47.736544 kcal Electronic energy + Delta-G solvation = -19245.460586 eV Core-core repulsion = 16059.579326 eV Total energy + Delta-G solvation = -3185.881260 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60233 -39.09790 -36.10118 -35.28718 -34.25522 -33.41219 -31.93068 -30.18100 -28.83611 -27.44018 -25.29478 -22.91681 -22.04927 -21.21694 -20.98833 -20.12427 -18.31953 -17.53729 -16.97959 -16.37179 -16.14149 -15.71393 -15.47763 -14.91647 -14.45470 -14.21789 -13.92140 -13.61089 -13.37059 -13.20804 -13.08162 -12.76327 -12.38751 -11.94371 -11.59702 -11.19001 -11.10440 -10.98845 -10.75568 -10.64790 -10.13305 -9.81954 -9.56502 -9.37222 -8.97720 -8.87000 -8.11870 -7.21010 -5.74125 -3.09872 1.58062 1.88368 2.02493 3.31705 3.36439 3.39511 3.41910 3.47372 3.50566 4.09245 4.58126 4.61515 4.65704 4.88241 4.92231 5.03735 5.12636 5.29890 5.34945 5.56965 5.59574 5.87532 5.95578 6.01213 6.05618 6.21292 6.26383 6.55580 6.74446 6.77732 6.95446 7.06668 7.47570 7.67168 8.02499 8.36935 8.44914 9.23930 9.96092 10.15863 11.44319 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.042527 B = 0.002891 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.251153 B = 9681.780580 C =10308.979349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.403 5.403 3 N -0.306 5.306 4 C 0.114 3.886 5 C -0.371 4.371 6 C 0.603 3.397 7 O -0.571 6.571 8 N -0.726 5.726 9 C 0.126 3.874 10 C -0.142 4.142 11 C 0.160 3.840 12 N -0.757 5.757 13 C -0.244 4.244 14 H 0.091 0.909 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.887 3.113 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 C 0.434 3.566 22 N -0.830 5.830 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.189 0.811 27 H 0.398 0.602 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.432 0.568 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.584 2.534 -0.057 31.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.192 5.192 3 N -0.125 5.125 4 C -0.076 4.076 5 C -0.391 4.391 6 C 0.393 3.607 7 O -0.452 6.452 8 N -0.376 5.376 9 C 0.003 3.997 10 C -0.180 4.180 11 C 0.033 3.967 12 N -0.403 5.403 13 C -0.374 4.374 14 H 0.108 0.892 15 C -0.194 4.194 16 N -0.583 5.583 17 Si 0.717 3.283 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 C 0.199 3.801 22 N -0.380 5.380 23 H 0.093 0.907 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.206 0.794 27 H 0.232 0.768 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.269 0.731 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -32.362 2.517 -0.058 32.460 hybrid contribution 0.393 0.820 -0.005 0.909 sum -31.969 3.337 -0.063 32.143 Atomic orbital electron populations 1.21807 0.74233 1.04521 1.03411 1.48177 1.06414 1.02387 1.62179 1.77134 1.01810 1.05307 1.28211 1.23802 0.95272 0.93457 0.95093 1.19317 0.90944 0.93663 1.35171 1.16920 0.82170 0.86649 0.75005 1.90673 1.86977 1.14329 1.53218 1.45715 1.05469 1.10319 1.76061 1.21280 0.82537 0.93381 1.02543 1.21994 0.94266 0.99199 1.02581 1.20503 0.84454 0.92759 0.99027 1.42696 1.02279 1.04037 1.91278 1.19080 0.81565 0.93861 1.42896 0.89163 1.24697 0.95076 0.97489 1.02099 1.69707 0.96799 1.34123 1.57655 0.86505 0.76876 0.87157 0.77741 1.21081 1.21757 1.20317 1.18056 0.89502 0.81924 0.90649 1.41810 1.11234 1.02763 1.82199 0.90708 0.88681 0.90110 0.79398 0.76804 0.91310 0.91327 0.91347 0.91341 0.95189 0.95248 0.80682 0.93073 0.73087 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.25 59.85 0.67 1.11 16 2 N -0.40 -3.60 4.00 -66.82 -0.27 -3.87 16 3 N -0.31 -3.29 12.47 30.88 0.38 -2.91 16 4 C 0.11 1.13 11.49 -16.97 -0.20 0.94 16 5 C -0.37 -4.26 6.15 -104.82 -0.64 -4.90 16 6 C 0.60 8.00 7.79 -12.81 -0.10 7.90 16 7 O -0.57 -9.00 15.14 5.20 0.08 -8.92 16 8 N -0.73 -8.52 5.55 -61.59 -0.34 -8.87 16 9 C 0.13 1.68 5.67 -4.05 -0.02 1.66 16 10 C -0.14 -2.05 5.44 -26.73 -0.15 -2.19 16 11 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 12 N -0.76 -18.21 5.41 -59.90 -0.32 -18.53 16 13 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 14 H 0.09 2.78 8.06 -52.48 -0.42 2.36 16 15 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 16 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 17 Si 0.89 22.21 27.74 -169.99 -4.71 17.50 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 21 C 0.43 4.32 7.98 -153.78 -1.23 3.09 16 22 N -0.83 -6.09 9.02 31.40 0.28 -5.81 16 23 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.15 7.45 -51.93 -0.39 -0.24 16 26 H 0.19 1.26 7.50 -52.49 -0.39 0.86 16 27 H 0.40 3.66 7.42 -40.82 -0.30 3.35 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.36 8.34 5.53 -40.82 -0.23 8.11 16 35 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 36 H 0.43 3.79 7.01 -40.82 -0.29 3.51 16 37 H 0.40 1.51 8.04 -40.82 -0.33 1.18 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -36.91 316.49 -6.19 -43.10 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.90 Total: 9.08 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.94 Total: 3.41 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: 0.51 Total: -68.94 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.08 Total: -8.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.50 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.91 -6.19 -43.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156937287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.840 kcal (2) G-P(sol) polarization free energy of solvation -36.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds