Wall clock time and date at job start Mon Mar 30 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.50708 * 109.46907 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99897 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47225 * 60.00418 * 10 8 6 12 12 H 1.48502 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47366 * 300.00067 * 10 8 6 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47291 * 179.97438 * 17 16 15 19 19 C 1.33393 * 125.20280 * 89.99139 * 18 17 16 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20269 * 269.69352 * 18 17 16 23 23 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 24 24 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 26 26 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 27 27 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 28 28 H 1.09001 * 109.47460 * 300.00033 * 5 4 2 29 29 H 1.08999 * 109.47250 * 60.00412 * 5 4 2 30 30 H 0.97000 * 119.99909 * 180.02562 * 9 8 6 31 31 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 35 35 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 36 36 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 37 37 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 38 38 H 1.07998 * 122.54270 * 359.96273 * 19 18 17 39 39 H 1.07994 * 122.54068 * 180.02562 * 20 19 18 40 40 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3613 2.8150 9 7 6.2690 -0.7760 2.0003 10 14 6.0412 -2.2419 4.3401 11 1 5.6478 -3.6726 4.2810 12 1 7.5212 -2.1373 4.4026 13 1 5.4497 -1.6154 5.5497 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5949 -0.5333 -3.5745 17 6 2.6609 0.4200 -4.7694 18 6 3.1663 -0.3242 -5.9784 19 6 2.4004 -0.9669 -6.8615 20 6 3.0893 -1.5794 -7.8942 21 6 4.4145 -1.4347 -7.8495 22 16 4.8557 -0.4720 -6.4451 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 7.2198 -0.8024 2.1909 31 1 1.4495 -1.4980 -1.4100 32 1 2.7588 1.0462 -2.1183 33 1 1.0870 0.6163 -2.5525 34 1 3.5902 -0.9273 -3.3692 35 1 1.9182 -1.3566 -3.8030 36 1 1.6658 0.8144 -4.9750 37 1 3.3379 1.2431 -4.5407 38 1 1.3245 -1.0065 -6.7770 39 1 2.5915 -2.1326 -8.6767 40 1 5.1099 -1.8418 -8.5685 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:55 Heat of formation + Delta-G solvation = 2.438786 kcal Electronic energy + Delta-G solvation = -17345.949486 eV Core-core repulsion = 14672.104431 eV Total energy + Delta-G solvation = -2673.845055 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.22010 -37.32057 -34.65364 -32.95866 -31.23253 -29.30797 -28.08406 -25.41719 -24.81505 -22.91446 -21.36270 -21.24003 -19.63183 -19.34587 -17.19524 -16.07009 -15.80163 -15.25966 -15.02478 -14.57334 -14.24909 -13.63700 -13.33712 -13.10984 -12.78223 -12.65736 -12.45545 -12.33011 -12.22180 -11.73234 -11.57596 -11.38312 -11.19696 -11.02760 -10.84094 -10.73254 -10.58892 -10.43110 -10.11934 -9.58902 -9.16595 -8.87586 -8.72629 -8.57071 -8.19501 -7.82424 -5.84750 -3.85887 0.89629 1.54407 1.92385 2.62408 3.40951 3.44993 3.47586 4.42012 4.57090 4.73438 4.92152 4.97346 5.25722 5.31347 5.39726 5.42370 5.49693 5.50454 5.53125 5.63541 5.71046 5.76357 5.83119 5.98950 6.11014 6.16904 6.24164 6.30768 6.36382 6.40283 6.47333 6.72303 6.93252 7.35459 7.56368 7.86330 7.88660 8.12256 8.27864 8.61597 9.23041 9.76418 11.26281 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003485 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.739269 B = 8033.464302 C = 9240.335865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.672 5.672 15 C 0.062 3.938 16 C -0.112 4.112 17 C -0.049 4.049 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.134 4.134 21 C -0.224 4.224 22 S 0.104 5.896 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.006 0.994 30 H 0.258 0.742 31 H 0.334 0.666 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 1.777 -19.276 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.302 5.302 15 C -0.068 4.068 16 C -0.150 4.150 17 C -0.089 4.089 18 C -0.279 4.279 19 C -0.179 4.179 20 C -0.164 4.164 21 C -0.359 4.359 22 S 0.368 5.632 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.775 2.412 -18.550 19.895 hybrid contribution -1.826 -0.981 -0.046 2.073 sum -8.600 1.431 -18.596 20.539 Atomic orbital electron populations 1.22535 0.98712 1.01474 1.01181 1.21733 0.90832 0.98342 0.91670 0.91090 1.21629 1.00619 0.98347 0.93048 1.18989 0.88307 0.96427 0.97001 1.21323 0.91839 1.34049 1.08527 0.93193 1.24997 0.97136 0.95806 0.96501 1.69970 1.02170 1.44353 1.36965 0.86745 0.77567 0.80297 0.83849 1.20375 1.21402 1.20452 1.60487 1.57628 1.09032 1.03036 1.21943 0.98546 0.95956 0.90343 1.21580 1.03187 0.97757 0.92514 1.20162 1.01345 0.97225 0.90189 1.24594 0.95850 1.05690 1.01801 1.20096 1.01066 1.01234 0.95552 1.20142 0.93379 1.02576 1.00346 1.25612 0.99502 1.07645 1.03178 1.84512 1.07089 1.50710 1.20913 0.93794 0.92832 0.92312 0.93600 0.93527 0.94915 0.97551 0.93214 0.84864 0.91009 0.96088 0.90426 0.91990 0.90211 0.90509 0.84537 0.84598 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.16 37.16 0.34 -2.12 16 2 C 0.08 1.43 2.59 -67.71 -0.18 1.25 16 3 H 0.07 1.26 7.80 -51.93 -0.40 0.86 16 4 C -0.10 -2.08 4.83 -26.73 -0.13 -2.20 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.78 13.29 55.43 0.74 -27.04 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.67 -10.93 5.70 -106.72 -0.61 -11.53 16 15 C 0.06 0.83 5.48 -3.82 -0.02 0.81 16 16 C -0.11 -1.37 5.46 -26.73 -0.15 -1.51 16 17 C -0.05 -0.51 5.71 -27.88 -0.16 -0.67 16 18 C -0.16 -1.78 5.76 -36.00 -0.21 -1.98 16 19 C -0.15 -1.51 10.05 -41.21 -0.41 -1.93 16 20 C -0.13 -1.27 10.18 -41.21 -0.42 -1.69 16 21 C -0.22 -2.16 11.23 29.04 0.33 -1.83 16 22 S 0.10 1.15 23.33 -107.50 -2.51 -1.36 16 23 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16 24 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 29 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.33 4.93 8.47 -39.29 -0.33 4.60 16 32 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.02 0.25 7.44 -51.93 -0.39 -0.13 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -31.53 343.51 -10.72 -42.25 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.95 Total: 0.40 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -1.55 Total: -25.19 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.13 Total: -38.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.53 -10.72 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.692 kcal (2) G-P(sol) polarization free energy of solvation -31.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds