Wall clock time and date at job start Mon Mar 30 2020 00:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.53001 * 109.46786 * 184.99812 * 4 2 1 6 6 C 1.50708 * 109.46907 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99767 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99999 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99897 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47225 * 60.00418 * 10 8 6 12 12 H 1.48502 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47366 * 300.00067 * 10 8 6 14 14 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 15 15 C 1.46901 * 110.99793 * 85.00144 * 14 2 1 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 2 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47291 * 179.97438 * 17 16 15 19 19 C 1.33393 * 125.20280 * 89.99139 * 18 17 16 20 20 C 1.38425 * 114.92007 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92135 * 0.02562 * 20 19 18 22 22 S 1.75882 * 125.20269 * 269.69352 * 18 17 16 23 23 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 24 24 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 26 26 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 27 27 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 28 28 H 1.09001 * 109.47460 * 300.00033 * 5 4 2 29 29 H 1.08999 * 109.47250 * 60.00412 * 5 4 2 30 30 H 0.97000 * 119.99909 * 180.02562 * 9 8 6 31 31 H 1.00899 * 110.99995 * 321.04542 * 14 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 15 14 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 15 14 2 34 34 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 35 35 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 36 36 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 37 37 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 38 38 H 1.07998 * 122.54270 * 359.96273 * 19 18 17 39 39 H 1.07994 * 122.54068 * 180.02562 * 20 19 18 40 40 H 1.07999 * 125.20519 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3688 -1.8052 3.2125 8 6 5.4185 -1.3613 2.8150 9 7 6.2690 -0.7760 2.0003 10 14 6.0412 -2.2419 4.3401 11 1 5.6478 -3.6726 4.2810 12 1 7.5212 -2.1373 4.4026 13 1 5.4497 -1.6154 5.5497 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2226 -2.3469 16 6 2.5949 -0.5333 -3.5745 17 6 2.6609 0.4200 -4.7694 18 6 3.1663 -0.3242 -5.9784 19 6 2.4004 -0.9669 -6.8615 20 6 3.0893 -1.5794 -7.8942 21 6 4.4145 -1.4347 -7.8495 22 16 4.8557 -0.4720 -6.4451 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.9994 -1.0728 0.4259 29 1 3.8532 0.4370 1.3573 30 1 7.2198 -0.8024 2.1909 31 1 1.4495 -1.4980 -1.4100 32 1 2.7588 1.0462 -2.1183 33 1 1.0870 0.6163 -2.5525 34 1 3.5902 -0.9273 -3.3692 35 1 1.9182 -1.3566 -3.8030 36 1 1.6658 0.8144 -4.9750 37 1 3.3379 1.2431 -4.5407 38 1 1.3245 -1.0065 -6.7770 39 1 2.5915 -2.1326 -8.6767 40 1 5.1099 -1.8418 -8.5685 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478089.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:55 Heat of formation + Delta-G solvation = -15.340167 kcal Electronic energy + Delta-G solvation = -17346.720439 eV Core-core repulsion = 14672.104431 eV Total energy + Delta-G solvation = -2674.616008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.10718 -38.52381 -35.93197 -34.87358 -32.69860 -30.86220 -29.10231 -27.01463 -26.10644 -23.85896 -23.07084 -22.38445 -21.18729 -20.10042 -18.35075 -18.02253 -16.79023 -16.49636 -16.31470 -16.14830 -15.60555 -14.78501 -14.52755 -14.30100 -14.07176 -13.95502 -13.66695 -13.46817 -13.27108 -13.14174 -12.99492 -12.81046 -12.55482 -12.45037 -12.33629 -12.15184 -11.80604 -11.60512 -11.52307 -11.48638 -11.19894 -10.94797 -10.47656 -9.52246 -9.41002 -9.07961 -8.12863 -6.23767 0.11680 0.75107 1.15209 1.39806 1.43591 1.51257 1.87748 2.44287 3.18969 3.29649 3.83102 4.01717 4.09725 4.26195 4.30327 4.39317 4.44284 4.45875 4.55332 4.71374 4.72887 4.79222 4.80548 4.90478 5.00327 5.03873 5.11573 5.16702 5.29919 5.32298 5.35330 5.42301 5.48792 5.59643 5.65065 5.89931 6.03757 6.32112 6.35450 6.69222 6.96175 7.44311 8.98238 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.003485 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.739269 B = 8033.464302 C = 9240.335865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.090 3.910 3 H 0.058 0.942 4 C -0.089 4.089 5 C 0.039 3.961 6 C -0.545 4.545 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.933 5.933 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.283 1.283 13 H -0.267 1.267 14 N -0.697 5.697 15 C 0.067 3.933 16 C -0.101 4.101 17 C -0.043 4.043 18 C -0.177 4.177 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.220 4.220 22 S 0.054 5.946 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.002 0.998 29 H -0.025 1.025 30 H 0.261 0.739 31 H 0.343 0.657 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.925 0.963 -19.689 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 H 0.076 0.924 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.583 4.583 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.787 3.213 11 H -0.192 1.192 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.328 5.328 15 C -0.062 4.062 16 C -0.140 4.140 17 C -0.082 4.082 18 C -0.295 4.295 19 C -0.177 4.177 20 C -0.170 4.170 21 C -0.355 4.355 22 S 0.317 5.683 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.021 0.979 29 H -0.007 1.007 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.703 1.596 -18.969 20.932 hybrid contribution -1.214 -0.738 0.023 1.421 sum -9.917 0.858 -18.946 21.402 Atomic orbital electron populations 1.22376 0.95257 1.02485 1.02499 1.21509 0.93426 0.96823 0.90229 0.92388 1.21467 0.96443 0.99093 0.95678 1.18818 0.92320 0.93706 0.94990 1.21801 0.92542 1.34432 1.09490 0.92607 1.25982 0.97405 0.96532 1.00078 1.70124 1.02548 1.45619 1.39081 0.85552 0.76989 0.79259 0.79522 1.19237 1.20881 1.19183 1.60362 1.58526 1.10135 1.03806 1.21909 0.99514 0.95081 0.89727 1.21452 1.01425 0.98299 0.92807 1.20095 1.02415 0.96471 0.89239 1.24666 0.95336 1.06913 1.02549 1.20429 1.02086 1.00130 0.95056 1.20491 0.93332 1.02397 1.00746 1.25897 1.00191 1.06958 1.02502 1.84685 1.08637 1.52189 1.22822 0.91687 0.91948 0.91785 0.93242 0.93448 0.97934 1.00688 0.93049 0.83834 0.92908 0.93421 0.93615 0.90968 0.87966 0.91160 0.82564 0.82015 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.14 9.16 71.98 0.66 -3.48 16 2 C 0.09 3.02 2.59 44.91 0.12 3.14 16 3 H 0.06 2.09 7.80 -2.39 -0.02 2.07 16 4 C -0.09 -3.77 4.83 30.59 0.15 -3.62 16 5 C 0.04 2.16 4.86 29.85 0.15 2.30 16 6 C -0.54 -32.54 9.11 25.60 0.23 -32.31 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -59.43 13.29 21.45 0.28 -59.15 16 10 Si 0.96 45.98 29.54 68.60 2.03 48.01 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 N -0.70 -22.60 5.70 -491.55 -2.80 -25.41 16 15 C 0.07 1.77 5.48 86.30 0.47 2.25 16 16 C -0.10 -2.45 5.46 30.59 0.17 -2.29 16 17 C -0.04 -0.86 5.71 29.85 0.17 -0.69 16 18 C -0.18 -3.78 5.76 24.59 0.14 -3.64 16 19 C -0.15 -2.68 10.05 21.22 0.21 -2.47 16 20 C -0.14 -2.34 10.18 21.22 0.22 -2.13 16 21 C -0.22 -3.98 11.23 66.72 0.75 -3.23 16 22 S 0.05 1.21 23.33 -56.49 -1.32 -0.11 16 23 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 24 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 25 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.00 0.14 7.75 -2.39 -0.02 0.12 16 29 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.34 9.80 8.47 -89.69 -0.76 9.04 16 32 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.05 1.03 7.44 -2.39 -0.02 1.01 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 40 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -69.55 343.51 2.32 -67.24 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.23 Total: 15.28 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 3.89 Total: -45.86 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.52 Total: -84.56 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -1.32 Total: -0.11 kcal Total: -69.55 2.32 -67.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478089.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.896 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds