Wall clock time and date at job start Mon Mar 30 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47033 * 2 1 4 4 C 1.53002 * 109.47325 * 239.99616 * 2 1 3 5 5 C 1.53000 * 109.47086 * 174.99824 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99760 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47466 * 59.99639 * 10 8 6 12 12 H 1.48499 * 109.47089 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47229 * 299.99790 * 10 8 6 14 14 N 1.46905 * 109.46991 * 119.99449 * 2 1 3 15 15 C 1.46893 * 111.00280 * 275.00331 * 14 2 1 16 16 H 1.09005 * 109.47092 * 34.99600 * 15 14 2 17 17 C 1.53001 * 109.47016 * 275.00084 * 15 14 2 18 18 C 1.50697 * 109.47403 * 154.99894 * 15 14 2 19 19 N 1.31791 * 119.08988 * 45.02245 * 18 15 14 20 20 C 1.32309 * 120.84440 * 179.97438 * 19 18 15 21 21 C 1.38825 * 119.07437 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.82618 * 179.97438 * 21 20 19 23 23 C 1.38818 * 118.34502 * 0.02562 * 21 20 19 24 24 N 1.31779 * 119.09526 * 225.00105 * 18 15 14 25 25 H 1.09005 * 109.46704 * 60.00455 * 1 2 3 26 26 H 1.09002 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47301 * 300.00317 * 1 2 3 28 28 H 1.08992 * 109.46944 * 295.00177 * 4 2 1 29 29 H 1.08996 * 109.46705 * 55.00022 * 4 2 1 30 30 H 1.09000 * 109.47458 * 300.00652 * 5 4 2 31 31 H 1.09007 * 109.46756 * 60.00390 * 5 4 2 32 32 H 0.96998 * 119.99940 * 180.02562 * 9 8 6 33 33 H 1.00899 * 110.99256 * 38.96126 * 14 2 1 34 34 H 1.09003 * 109.47230 * 180.02562 * 17 15 14 35 35 H 1.08997 * 109.47019 * 299.99969 * 17 15 14 36 36 H 1.08998 * 109.47366 * 60.00089 * 17 15 14 37 37 H 1.08003 * 120.46614 * 180.27698 * 20 19 18 38 38 H 1.08000 * 120.46186 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3232 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3601 -2.8156 9 7 6.2690 -0.7754 -2.0006 10 14 6.0411 -2.2395 -4.3415 11 1 5.4495 -1.6122 -5.5505 12 1 7.5211 -2.1348 -4.4040 13 1 5.6477 -3.6704 -4.2835 14 7 2.0197 -0.6924 1.1996 15 6 2.0824 0.2227 2.3469 16 1 1.2575 0.9331 2.2906 17 6 3.4110 0.9810 2.3224 18 6 1.9785 -0.5674 3.6259 19 7 2.6883 -1.6700 3.7574 20 6 2.6241 -2.3901 4.8655 21 6 1.7953 -1.9690 5.8966 22 9 1.7023 -2.6773 7.0432 23 6 1.0639 -0.8025 5.7196 24 7 1.1807 -0.1366 4.5823 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2619 -2.1369 30 1 3.8533 0.4369 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 7.2197 -0.8010 -2.1916 33 1 1.4495 -1.4978 1.4100 34 1 3.4578 1.6597 3.1740 35 1 4.2358 0.2707 2.3786 36 1 3.4862 1.5525 1.3973 37 1 3.2119 -3.2903 4.9685 38 1 0.4089 -0.4433 6.4996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:03 Heat of formation + Delta-G solvation = -6.634867 kcal Electronic energy + Delta-G solvation = -19993.604458 eV Core-core repulsion = 16785.445515 eV Total energy + Delta-G solvation = -3208.158943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.35520 -41.30117 -37.58321 -34.14643 -34.05483 -32.61118 -30.69354 -29.43530 -27.86454 -25.26473 -25.12505 -24.58324 -21.74094 -20.85994 -19.78760 -18.49363 -17.89089 -17.07020 -16.36750 -16.04668 -15.37984 -14.81331 -14.78692 -14.44579 -14.31628 -13.73991 -13.47586 -13.02425 -12.87063 -12.32642 -12.27633 -12.10716 -11.86968 -11.52372 -11.30332 -11.19269 -11.17339 -10.91683 -10.74785 -10.42985 -10.18531 -9.57076 -9.48346 -9.43853 -9.16036 -8.85212 -8.17911 -7.89463 -5.83039 -3.83732 0.39457 0.67120 3.33623 3.41970 3.46091 3.48356 3.48693 3.56306 3.78264 4.32914 4.39245 4.56437 4.58566 4.99245 5.24685 5.36226 5.42074 5.51751 5.52418 5.58764 5.68111 5.93419 6.00956 6.10156 6.23632 6.28729 6.42103 6.57420 6.67446 6.70796 6.92619 7.34195 7.46072 7.71810 7.83630 7.90355 8.14370 8.31440 8.63588 9.25231 9.78374 11.27927 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.004079 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.209504 B = 6862.268419 C = 7446.171141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.083 3.917 3 H 0.076 0.924 4 C -0.097 4.097 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 N -0.651 5.651 15 C 0.156 3.844 16 H 0.068 0.932 17 C -0.135 4.135 18 C 0.312 3.688 19 N -0.457 5.457 20 C 0.128 3.872 21 C -0.017 4.017 22 F -0.123 7.123 23 C 0.123 3.877 24 N -0.492 5.492 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.007 0.993 31 H 0.036 0.964 32 H 0.258 0.742 33 H 0.336 0.664 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.181 0.819 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 0.697 16.287 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.067 0.933 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.282 5.282 15 C 0.045 3.955 16 H 0.085 0.915 17 C -0.193 4.193 18 C 0.045 3.955 19 N -0.169 5.169 20 C -0.040 4.040 21 C -0.041 4.041 22 F -0.101 7.101 23 C -0.045 4.045 24 N -0.205 5.205 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.155 0.845 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.198 0.802 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.334 1.322 15.323 18.529 hybrid contribution -0.641 -1.127 0.533 1.402 sum -10.975 0.195 15.856 19.285 Atomic orbital electron populations 1.22568 0.98629 1.01539 1.01411 1.21854 0.90859 0.98613 0.91344 0.90561 1.21612 1.00763 0.98338 0.92744 1.18999 0.88151 0.96462 0.97106 1.21318 0.91810 1.34098 1.08468 0.93259 1.24975 0.97136 0.95794 0.96411 1.69965 1.02139 1.44384 1.36892 0.86771 0.77558 0.80317 0.83954 1.20488 1.21447 1.20423 1.60619 1.57921 1.08029 1.01666 1.20285 0.99621 0.92260 0.83339 0.91453 1.21793 0.96008 0.99714 1.01798 1.23571 0.87096 0.89534 0.95292 1.68465 1.20464 1.05843 1.22107 1.23656 0.94022 0.99218 0.87119 1.19641 1.03311 0.95325 0.85805 1.91544 1.95049 1.77128 1.46418 1.23411 0.95798 0.89665 0.95611 1.68312 1.18973 1.32442 1.00780 0.92033 0.92893 0.93677 0.93496 0.93465 0.97492 0.94594 0.93261 0.84498 0.93269 0.90657 0.90728 0.80188 0.80481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.15 37.16 0.34 -2.12 16 2 C 0.08 1.37 2.40 -67.71 -0.16 1.21 16 3 H 0.08 1.29 7.11 -51.93 -0.37 0.92 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 6 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 10 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.65 -10.66 5.33 -100.95 -0.54 -11.20 16 15 C 0.16 2.27 2.83 -68.87 -0.19 2.08 16 16 H 0.07 0.92 7.09 -51.93 -0.37 0.55 16 17 C -0.13 -2.04 9.38 37.16 0.35 -1.69 16 18 C 0.31 4.32 6.26 -157.21 -0.98 3.33 16 19 N -0.46 -6.44 10.04 -10.68 -0.11 -6.55 16 20 C 0.13 1.41 11.30 -17.13 -0.19 1.21 16 21 C -0.02 -0.16 7.39 -39.15 -0.29 -0.45 16 22 F -0.12 -1.14 17.30 2.25 0.04 -1.10 16 23 C 0.12 1.20 11.30 -17.13 -0.19 1.00 16 24 N -0.49 -6.08 10.31 -10.68 -0.11 -6.19 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.34 5.32 8.03 -39.29 -0.32 5.00 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.19 7.43 -51.93 -0.39 0.80 16 37 H 0.18 1.49 8.06 -52.48 -0.42 1.06 16 38 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -31.78 325.38 -7.67 -39.46 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.57 Total: 0.89 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.01 Total: -10.66 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.02 Total: -50.64 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.78 -7.67 -39.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.825 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds