Wall clock time and date at job start Mon Mar 30 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47033 * 2 1 4 4 C 1.53002 * 109.47325 * 239.99616 * 2 1 3 5 5 C 1.53000 * 109.47086 * 174.99824 * 4 2 1 6 6 C 1.50699 * 109.46990 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99996 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99760 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99836 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47466 * 59.99639 * 10 8 6 12 12 H 1.48499 * 109.47089 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47229 * 299.99790 * 10 8 6 14 14 N 1.46905 * 109.46991 * 119.99449 * 2 1 3 15 15 C 1.46893 * 111.00280 * 275.00331 * 14 2 1 16 16 H 1.09005 * 109.47092 * 34.99600 * 15 14 2 17 17 C 1.53001 * 109.47016 * 275.00084 * 15 14 2 18 18 C 1.50697 * 109.47403 * 154.99894 * 15 14 2 19 19 N 1.31791 * 119.08988 * 45.02245 * 18 15 14 20 20 C 1.32309 * 120.84440 * 179.97438 * 19 18 15 21 21 C 1.38825 * 119.07437 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.82618 * 179.97438 * 21 20 19 23 23 C 1.38818 * 118.34502 * 0.02562 * 21 20 19 24 24 N 1.31779 * 119.09526 * 225.00105 * 18 15 14 25 25 H 1.09005 * 109.46704 * 60.00455 * 1 2 3 26 26 H 1.09002 * 109.47033 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47301 * 300.00317 * 1 2 3 28 28 H 1.08992 * 109.46944 * 295.00177 * 4 2 1 29 29 H 1.08996 * 109.46705 * 55.00022 * 4 2 1 30 30 H 1.09000 * 109.47458 * 300.00652 * 5 4 2 31 31 H 1.09007 * 109.46756 * 60.00390 * 5 4 2 32 32 H 0.96998 * 119.99940 * 180.02562 * 9 8 6 33 33 H 1.00899 * 110.99256 * 38.96126 * 14 2 1 34 34 H 1.09003 * 109.47230 * 180.02562 * 17 15 14 35 35 H 1.08997 * 109.47019 * 299.99969 * 17 15 14 36 36 H 1.08998 * 109.47366 * 60.00089 * 17 15 14 37 37 H 1.08003 * 120.46614 * 180.27698 * 20 19 18 38 38 H 1.08000 * 120.46186 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3232 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3601 -2.8156 9 7 6.2690 -0.7754 -2.0006 10 14 6.0411 -2.2395 -4.3415 11 1 5.4495 -1.6122 -5.5505 12 1 7.5211 -2.1348 -4.4040 13 1 5.6477 -3.6704 -4.2835 14 7 2.0197 -0.6924 1.1996 15 6 2.0824 0.2227 2.3469 16 1 1.2575 0.9331 2.2906 17 6 3.4110 0.9810 2.3224 18 6 1.9785 -0.5674 3.6259 19 7 2.6883 -1.6700 3.7574 20 6 2.6241 -2.3901 4.8655 21 6 1.7953 -1.9690 5.8966 22 9 1.7023 -2.6773 7.0432 23 6 1.0639 -0.8025 5.7196 24 7 1.1807 -0.1366 4.5823 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7517 -1.7715 -1.2055 29 1 1.6054 -0.2619 -2.1369 30 1 3.8533 0.4369 -1.3572 31 1 3.9995 -1.0728 -0.4258 32 1 7.2197 -0.8010 -2.1916 33 1 1.4495 -1.4978 1.4100 34 1 3.4578 1.6597 3.1740 35 1 4.2358 0.2707 2.3786 36 1 3.4862 1.5525 1.3973 37 1 3.2119 -3.2903 4.9685 38 1 0.4089 -0.4433 6.4996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:03 Heat of formation + Delta-G solvation = -27.430429 kcal Electronic energy + Delta-G solvation = -19994.506221 eV Core-core repulsion = 16785.445515 eV Total energy + Delta-G solvation = -3209.060706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.13568 -42.21312 -38.87804 -35.70101 -35.01774 -34.40864 -31.98342 -30.99667 -29.12457 -26.97941 -26.10511 -25.69140 -23.31613 -22.23862 -21.27470 -19.40872 -18.69474 -18.35667 -18.00788 -17.18671 -16.58061 -16.46605 -15.88230 -15.72425 -15.35219 -14.98632 -14.53176 -14.28868 -14.26140 -13.95161 -13.78175 -13.33362 -13.13305 -13.04655 -12.83318 -12.75755 -12.48447 -12.33966 -12.13609 -12.10715 -11.76260 -11.44898 -11.16765 -10.93019 -10.42840 -10.34138 -10.33448 -9.16927 -8.08727 -6.18565 -0.48830 -0.15383 1.41788 1.45062 1.52559 2.42348 2.47085 2.57310 2.69352 2.88281 3.23469 3.42054 3.59290 3.63007 3.96230 4.10476 4.21327 4.36052 4.41559 4.48540 4.54637 4.72218 4.80926 4.90306 5.03521 5.07354 5.14334 5.18336 5.31084 5.35224 5.52244 5.64185 5.73055 5.94781 6.10270 6.23175 6.40424 6.51775 6.88603 7.01688 7.48927 9.02161 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.004079 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.209504 B = 6862.268419 C = 7446.171141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 H 0.070 0.930 4 C -0.086 4.086 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.000 4.000 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.270 1.270 14 N -0.669 5.669 15 C 0.162 3.838 16 H 0.081 0.919 17 C -0.128 4.128 18 C 0.300 3.700 19 N -0.492 5.492 20 C 0.121 3.879 21 C -0.004 4.004 22 F -0.116 7.116 23 C 0.129 3.871 24 N -0.500 5.500 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.052 0.948 30 H -0.021 1.021 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.339 0.661 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.201 0.799 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.808 0.235 16.910 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.197 4.197 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.195 1.195 14 N -0.302 5.302 15 C 0.051 3.949 16 H 0.099 0.901 17 C -0.187 4.187 18 C 0.033 3.967 19 N -0.205 5.205 20 C -0.046 4.046 21 C -0.028 4.028 22 F -0.094 7.094 23 C -0.039 4.039 24 N -0.213 5.213 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.070 0.930 30 H -0.002 1.002 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.158 0.842 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.218 0.782 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.900 0.852 15.955 19.922 hybrid contribution -0.135 -1.008 0.453 1.113 sum -12.035 -0.157 16.408 20.349 Atomic orbital electron populations 1.22409 0.95515 1.02278 1.02666 1.21630 0.93175 0.97416 0.89753 0.91194 1.21429 0.96742 0.98884 0.95353 1.18802 0.91982 0.93931 0.94931 1.21804 0.92458 1.34415 1.09467 0.92808 1.25907 0.97416 0.96526 0.99840 1.70115 1.02465 1.45655 1.38925 0.85619 0.76982 0.79258 0.79851 1.19260 1.20971 1.19459 1.60460 1.58509 1.08783 1.02419 1.20156 0.99183 0.92193 0.83406 0.90121 1.21704 0.95799 0.99280 1.01879 1.23260 0.88175 0.89849 0.95438 1.68409 1.21550 1.06695 1.23868 1.23996 0.94398 0.99550 0.86693 1.19559 1.02548 0.95174 0.85500 1.91570 1.94911 1.76988 1.45957 1.24002 0.95462 0.89035 0.95358 1.68316 1.18844 1.32847 1.01325 0.91181 0.92401 0.91970 0.93747 0.92966 1.00241 0.97639 0.93149 0.84193 0.91232 0.93612 0.92207 0.78227 0.76776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.15 71.98 0.66 -3.61 16 2 C 0.09 2.97 2.40 44.92 0.11 3.08 16 3 H 0.07 2.39 7.11 -2.39 -0.02 2.38 16 4 C -0.09 -3.59 4.83 30.59 0.15 -3.44 16 5 C 0.04 2.21 4.86 29.85 0.15 2.36 16 6 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.93 -58.64 13.29 21.45 0.28 -58.36 16 10 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 N -0.67 -22.28 5.33 -473.30 -2.52 -24.80 16 15 C 0.16 4.71 2.83 44.17 0.12 4.83 16 16 H 0.08 2.11 7.09 -2.38 -0.02 2.10 16 17 C -0.13 -4.04 9.38 71.98 0.68 -3.37 16 18 C 0.30 8.14 6.26 138.75 0.87 9.01 16 19 N -0.49 -13.87 10.04 -187.69 -1.89 -15.76 16 20 C 0.12 2.53 11.30 84.76 0.96 3.48 16 21 C 0.00 -0.06 7.39 22.55 0.17 0.10 16 22 F -0.12 -1.85 17.30 44.97 0.78 -1.08 16 23 C 0.13 2.16 11.30 84.76 0.96 3.12 16 24 N -0.50 -11.46 10.31 -187.70 -1.94 -13.39 16 25 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.06 1.37 7.43 -2.39 -0.02 1.35 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 31 H 0.01 0.31 7.75 -2.38 -0.02 0.29 16 32 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.34 10.76 8.03 -89.69 -0.72 10.03 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.06 2.01 7.43 -2.39 -0.02 2.00 16 37 H 0.20 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.22 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -69.88 325.38 2.59 -67.29 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.34 Total: 14.12 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 5.51 Total: -15.80 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.06 Total: -112.31 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.78 Total: -1.08 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.88 2.59 -67.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.857 kcal (2) G-P(sol) polarization free energy of solvation -69.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds