Wall clock time and date at job start Mon Mar 30 2020 00:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 N 1.46899 * 109.46909 * 119.99838 * 2 1 3 5 5 C 1.46900 * 111.00268 * 205.71535 * 4 2 1 6 6 H 1.08996 * 109.46815 * 323.96252 * 5 4 2 7 7 C 1.53005 * 109.47122 * 83.95901 * 5 4 2 8 8 C 1.53000 * 109.47423 * 203.96006 * 5 4 2 9 9 C 1.53003 * 109.46873 * 64.99727 * 8 5 4 10 10 C 1.50697 * 109.46909 * 180.02562 * 9 8 5 11 11 H 1.07998 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00106 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47312 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47389 * 119.99957 * 14 12 10 17 17 H 1.48507 * 109.47234 * 240.00028 * 14 12 10 18 18 C 1.50692 * 109.47460 * 239.99652 * 2 1 3 19 19 N 1.31783 * 119.09699 * 284.73698 * 18 2 1 20 20 C 1.32317 * 120.85037 * 179.71539 * 19 18 2 21 21 C 1.38824 * 119.06914 * 0.54474 * 20 19 18 22 22 F 1.35100 * 120.82479 * 179.75286 * 21 20 19 23 23 C 1.38820 * 118.34948 * 359.72592 * 21 20 19 24 24 N 1.31787 * 119.09401 * 104.99888 * 18 2 1 25 25 H 1.08998 * 109.46878 * 175.17103 * 1 2 3 26 26 H 1.08993 * 109.47431 * 295.17240 * 1 2 3 27 27 H 1.09001 * 109.46671 * 55.17366 * 1 2 3 28 28 H 1.00895 * 111.00194 * 81.75694 * 4 2 1 29 29 H 1.08996 * 109.46875 * 64.70677 * 7 5 4 30 30 H 1.08998 * 109.46798 * 184.70929 * 7 5 4 31 31 H 1.09004 * 109.47129 * 304.71017 * 7 5 4 32 32 H 1.08992 * 109.47390 * 184.99913 * 8 5 4 33 33 H 1.08995 * 109.46699 * 304.99943 * 8 5 4 34 34 H 1.09000 * 109.47123 * 299.99991 * 9 8 5 35 35 H 1.08999 * 109.47054 * 60.00112 * 9 8 5 36 36 H 0.97001 * 119.99768 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.46748 * 180.26808 * 20 19 18 38 38 H 1.07994 * 120.46421 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3601 -0.2194 1.5702 6 1 3.9333 -0.0081 0.6676 7 6 3.2376 1.0558 2.4067 8 6 4.0740 -1.2984 2.3869 9 6 4.3076 -2.5304 1.5103 10 6 5.0102 -3.5935 2.3148 11 1 5.2650 -3.4086 3.3479 12 6 5.3287 -4.8016 1.7317 13 7 5.0197 -5.0261 0.4732 14 14 6.2002 -6.1190 2.7288 15 1 6.4355 -5.6214 4.1080 16 1 5.3570 -7.3402 2.7798 17 1 7.5018 -6.4425 2.0911 18 6 2.0325 -0.7104 -1.2303 19 7 1.9699 -2.0258 -1.2812 20 6 2.3960 -2.6846 -2.3467 21 6 2.9241 -1.9713 -3.4142 22 9 3.3741 -2.6082 -4.5174 23 6 2.9779 -0.5873 -3.3201 24 7 2.5271 0.0004 -2.2237 25 1 -0.3633 -1.0240 -0.0865 26 1 -0.3634 0.4371 0.9300 27 1 -0.3633 0.5869 -0.8436 28 1 2.0129 -1.6927 1.0676 29 1 2.7373 0.8265 3.3476 30 1 4.2318 1.4531 2.6112 31 1 2.6563 1.7964 1.8573 32 1 5.0321 -0.9147 2.7371 33 1 3.4579 -1.5732 3.2430 34 1 3.3494 -2.9142 1.1601 35 1 4.9237 -2.2556 0.6541 36 1 5.2435 -5.8762 0.0632 37 1 2.3379 -3.7624 -2.3836 38 1 3.3816 0.0013 -4.1305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:06 Heat of formation + Delta-G solvation = -11.600676 kcal Electronic energy + Delta-G solvation = -20670.594703 eV Core-core repulsion = 17462.220427 eV Total energy + Delta-G solvation = -3208.374277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.00218 -41.01509 -37.46392 -34.15778 -33.78450 -32.62509 -30.52281 -29.39514 -28.10798 -25.09212 -24.94345 -24.35624 -21.67248 -20.96863 -19.57867 -18.17320 -17.58923 -17.04988 -16.25353 -16.01702 -15.35202 -14.77521 -14.51290 -14.32211 -14.16458 -13.49594 -13.37276 -13.13603 -12.66162 -12.48956 -12.24360 -12.01347 -11.78052 -11.39206 -11.29386 -11.20019 -10.96019 -10.87958 -10.85732 -10.47485 -10.27211 -9.77787 -9.26651 -9.18245 -9.14578 -9.00356 -8.35719 -8.15372 -6.00264 -4.01494 0.74206 1.00732 3.30467 3.38138 3.42545 3.65418 3.83006 3.91938 4.05026 4.46061 4.64168 4.66969 4.76245 5.21088 5.35727 5.39805 5.49920 5.57691 5.64178 5.74109 5.81661 5.96277 6.04893 6.18612 6.28781 6.36453 6.40448 6.51892 6.56104 6.89325 6.91627 7.09577 7.42022 7.64419 7.80751 7.91090 8.00734 8.07323 8.43430 9.05032 9.62259 11.10711 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.007012 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.756842 B = 3992.247948 C = 5493.867719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.154 3.846 3 H 0.099 0.901 4 N -0.668 5.668 5 C 0.079 3.921 6 H 0.033 0.967 7 C -0.136 4.136 8 C -0.116 4.116 9 C 0.023 3.977 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.282 3.718 19 N -0.471 5.471 20 C 0.149 3.851 21 C -0.014 4.014 22 F -0.123 7.123 23 C 0.121 3.879 24 N -0.495 5.495 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.367 0.633 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.023 0.977 35 H 0.004 0.996 36 H 0.258 0.742 37 H 0.182 0.818 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 9.821 -6.501 13.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.041 3.959 3 H 0.117 0.883 4 N -0.304 5.304 5 C -0.031 4.031 6 H 0.051 0.949 7 C -0.194 4.194 8 C -0.153 4.153 9 C -0.014 4.014 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.212 1.212 18 C 0.013 3.987 19 N -0.183 5.183 20 C -0.019 4.019 21 C -0.038 4.038 22 F -0.102 7.102 23 C -0.047 4.047 24 N -0.208 5.208 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.192 0.808 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.067 0.933 37 H 0.199 0.801 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.028 10.541 -5.377 14.300 hybrid contribution 1.717 -1.951 -1.430 2.967 sum -6.311 8.590 -6.808 12.647 Atomic orbital electron populations 1.21733 0.92592 1.02636 1.02129 1.20543 0.96134 0.97213 0.82058 0.88260 1.60907 1.25412 1.12860 1.31217 1.21665 0.88308 0.95785 0.97308 0.94854 1.21803 1.00627 0.96630 1.00324 1.21840 0.98476 0.95912 0.99122 1.19098 0.96751 0.91182 0.94348 1.21272 1.37518 0.99094 0.97695 0.92690 1.24997 0.95982 0.98413 0.94931 1.69970 1.47622 1.24013 1.11644 0.86571 0.79336 0.81875 0.80425 1.19766 1.21008 1.21172 1.24571 0.91311 0.87411 0.95409 1.68138 1.16290 1.09634 1.24286 1.23507 0.90103 1.02031 0.86296 1.19572 1.03814 0.93357 0.87096 1.91533 1.86784 1.81812 1.50030 1.23356 0.94431 0.90484 0.96435 1.68320 1.10834 1.41035 1.00617 0.91960 0.90640 0.92721 0.80793 0.92220 0.93059 0.93483 0.92789 0.92260 0.95908 0.97809 0.93267 0.80116 0.80759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 9.50 37.16 0.35 -1.29 16 2 C 0.15 2.29 2.81 -68.87 -0.19 2.10 16 3 H 0.10 1.42 7.00 -51.93 -0.36 1.05 16 4 N -0.67 -11.41 6.05 -100.95 -0.61 -12.02 16 5 C 0.08 1.40 2.46 -67.71 -0.17 1.24 16 6 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 7 C -0.14 -1.99 9.41 37.16 0.35 -1.64 16 8 C -0.12 -2.43 4.75 -26.73 -0.13 -2.56 16 9 C 0.02 0.60 4.80 -27.88 -0.13 0.47 16 10 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 C 0.28 4.62 6.28 -157.21 -0.99 3.63 16 19 N -0.47 -8.26 9.31 -10.68 -0.10 -8.36 16 20 C 0.15 2.40 11.30 -17.13 -0.19 2.20 16 21 C -0.01 -0.21 7.39 -39.15 -0.29 -0.50 16 22 F -0.12 -1.72 17.30 2.25 0.04 -1.68 16 23 C 0.12 1.63 11.30 -17.13 -0.19 1.44 16 24 N -0.49 -7.61 10.31 -10.68 -0.11 -7.72 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.37 7.20 5.40 -39.29 -0.21 6.99 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.62 7.31 -51.93 -0.38 0.24 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.61 6.42 -51.93 -0.33 0.28 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.18 2.67 8.06 -52.49 -0.42 2.25 16 38 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -30.40 322.80 -7.65 -38.05 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.46 Total: 4.10 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.99 Total: -8.38 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.08 Total: -53.71 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.40 -7.65 -38.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.451 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds