Wall clock time and date at job start Mon Mar 30 2020 00:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 N 1.46899 * 109.46909 * 119.99838 * 2 1 3 5 5 C 1.46900 * 111.00268 * 205.71535 * 4 2 1 6 6 H 1.08996 * 109.46815 * 323.96252 * 5 4 2 7 7 C 1.53005 * 109.47122 * 83.95901 * 5 4 2 8 8 C 1.53000 * 109.47423 * 203.96006 * 5 4 2 9 9 C 1.53003 * 109.46873 * 64.99727 * 8 5 4 10 10 C 1.50697 * 109.46909 * 180.02562 * 9 8 5 11 11 H 1.07998 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99912 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00106 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00005 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47312 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47389 * 119.99957 * 14 12 10 17 17 H 1.48507 * 109.47234 * 240.00028 * 14 12 10 18 18 C 1.50692 * 109.47460 * 239.99652 * 2 1 3 19 19 N 1.31783 * 119.09699 * 284.73698 * 18 2 1 20 20 C 1.32317 * 120.85037 * 179.71539 * 19 18 2 21 21 C 1.38824 * 119.06914 * 0.54474 * 20 19 18 22 22 F 1.35100 * 120.82479 * 179.75286 * 21 20 19 23 23 C 1.38820 * 118.34948 * 359.72592 * 21 20 19 24 24 N 1.31787 * 119.09401 * 104.99888 * 18 2 1 25 25 H 1.08998 * 109.46878 * 175.17103 * 1 2 3 26 26 H 1.08993 * 109.47431 * 295.17240 * 1 2 3 27 27 H 1.09001 * 109.46671 * 55.17366 * 1 2 3 28 28 H 1.00895 * 111.00194 * 81.75694 * 4 2 1 29 29 H 1.08996 * 109.46875 * 64.70677 * 7 5 4 30 30 H 1.08998 * 109.46798 * 184.70929 * 7 5 4 31 31 H 1.09004 * 109.47129 * 304.71017 * 7 5 4 32 32 H 1.08992 * 109.47390 * 184.99913 * 8 5 4 33 33 H 1.08995 * 109.46699 * 304.99943 * 8 5 4 34 34 H 1.09000 * 109.47123 * 299.99991 * 9 8 5 35 35 H 1.08999 * 109.47054 * 60.00112 * 9 8 5 36 36 H 0.97001 * 119.99768 * 180.02562 * 13 12 10 37 37 H 1.08000 * 120.46748 * 180.26808 * 20 19 18 38 38 H 1.07994 * 120.46421 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3601 -0.2194 1.5702 6 1 3.9333 -0.0081 0.6676 7 6 3.2376 1.0558 2.4067 8 6 4.0740 -1.2984 2.3869 9 6 4.3076 -2.5304 1.5103 10 6 5.0102 -3.5935 2.3148 11 1 5.2650 -3.4086 3.3479 12 6 5.3287 -4.8016 1.7317 13 7 5.0197 -5.0261 0.4732 14 14 6.2002 -6.1190 2.7288 15 1 6.4355 -5.6214 4.1080 16 1 5.3570 -7.3402 2.7798 17 1 7.5018 -6.4425 2.0911 18 6 2.0325 -0.7104 -1.2303 19 7 1.9699 -2.0258 -1.2812 20 6 2.3960 -2.6846 -2.3467 21 6 2.9241 -1.9713 -3.4142 22 9 3.3741 -2.6082 -4.5174 23 6 2.9779 -0.5873 -3.3201 24 7 2.5271 0.0004 -2.2237 25 1 -0.3633 -1.0240 -0.0865 26 1 -0.3634 0.4371 0.9300 27 1 -0.3633 0.5869 -0.8436 28 1 2.0129 -1.6927 1.0676 29 1 2.7373 0.8265 3.3476 30 1 4.2318 1.4531 2.6112 31 1 2.6563 1.7964 1.8573 32 1 5.0321 -0.9147 2.7371 33 1 3.4579 -1.5732 3.2430 34 1 3.3494 -2.9142 1.1601 35 1 4.9237 -2.2556 0.6541 36 1 5.2435 -5.8762 0.0632 37 1 2.3379 -3.7624 -2.3836 38 1 3.3816 0.0013 -4.1305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485861.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:05 Heat of formation + Delta-G solvation = -30.808554 kcal Electronic energy + Delta-G solvation = -20671.427620 eV Core-core repulsion = 17462.220427 eV Total energy + Delta-G solvation = -3209.207193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.16106 -42.22057 -38.85702 -35.80861 -35.00332 -34.45400 -31.93027 -31.02453 -29.29691 -26.99884 -26.14548 -25.56798 -23.40925 -22.27196 -21.13993 -19.40264 -18.78718 -18.56985 -18.08219 -17.20100 -16.73997 -16.54433 -16.03296 -15.53369 -15.39388 -14.86634 -14.69084 -14.39839 -14.29365 -14.28578 -13.46559 -13.29985 -13.17693 -13.10829 -12.88284 -12.56602 -12.44741 -12.30884 -12.13879 -12.08741 -11.85064 -11.67683 -11.29612 -10.95159 -10.54932 -10.39164 -10.33853 -9.53800 -8.19554 -6.29711 -0.45812 -0.18133 1.37301 1.38210 1.50858 2.39627 2.44170 2.66678 2.73875 2.86522 3.13005 3.37113 3.56635 3.60119 4.00731 4.11594 4.20067 4.40030 4.43121 4.44870 4.52212 4.74906 4.82507 4.97907 5.01481 5.07728 5.09495 5.18446 5.22066 5.34733 5.45438 5.52912 5.69149 5.71448 5.84372 6.12588 6.25393 6.39055 6.84877 6.85687 7.38614 8.91123 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.007012 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.756842 B = 3992.247948 C = 5493.867719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.152 3.848 3 H 0.110 0.890 4 N -0.666 5.666 5 C 0.086 3.914 6 H 0.014 0.986 7 C -0.127 4.127 8 C -0.106 4.106 9 C 0.038 3.962 10 C -0.544 4.544 11 H 0.056 0.944 12 C 0.005 3.995 13 N -0.922 5.922 14 Si 0.960 3.040 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.280 1.280 18 C 0.271 3.729 19 N -0.499 5.499 20 C 0.127 3.873 21 C -0.013 4.013 22 F -0.119 7.119 23 C 0.129 3.871 24 N -0.500 5.500 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.351 0.649 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.005 0.995 35 H -0.033 1.033 36 H 0.261 0.739 37 H 0.183 0.817 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 10.914 -6.139 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.039 3.961 3 H 0.128 0.872 4 N -0.299 5.299 5 C -0.024 4.024 6 H 0.032 0.968 7 C -0.185 4.185 8 C -0.144 4.144 9 C 0.001 3.999 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.194 4.194 13 N -0.562 5.562 14 Si 0.785 3.215 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.206 1.206 18 C 0.002 3.998 19 N -0.212 5.212 20 C -0.040 4.040 21 C -0.037 4.037 22 F -0.097 7.097 23 C -0.039 4.039 24 N -0.213 5.213 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.024 0.976 35 H -0.015 1.015 36 H 0.070 0.930 37 H 0.199 0.801 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -8.025 11.652 -5.012 15.009 hybrid contribution 1.729 -2.304 -1.622 3.306 sum -6.295 9.348 -6.635 13.078 Atomic orbital electron populations 1.21686 0.90617 1.02295 1.03590 1.20738 0.97598 0.97055 0.80706 0.87175 1.61008 1.24589 1.11799 1.32549 1.21580 0.88204 0.96129 0.96485 0.96808 1.21725 1.01725 0.95021 0.99994 1.21691 0.99094 0.95008 0.98614 1.18877 0.94741 0.92753 0.93509 1.21690 1.38201 1.00248 0.98097 0.92562 1.25887 0.96633 1.00783 0.96056 1.70096 1.48286 1.24709 1.13145 0.85479 0.78110 0.78822 0.79106 1.18830 1.20292 1.20631 1.24819 0.91518 0.87227 0.96249 1.68108 1.17519 1.10499 1.25076 1.23662 0.90926 1.02491 0.86930 1.19550 1.03559 0.93853 0.86731 1.91542 1.86674 1.81869 1.49664 1.23998 0.92903 0.90300 0.96679 1.68388 1.11063 1.40904 1.00984 0.93251 0.89276 0.91010 0.82705 0.91733 0.92095 0.91515 0.92653 0.92145 0.97644 1.01462 0.93025 0.80053 0.76725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.90 9.50 71.98 0.68 -2.22 16 2 C 0.15 4.40 2.81 44.17 0.12 4.52 16 3 H 0.11 2.94 7.00 -2.39 -0.02 2.92 16 4 N -0.67 -22.62 6.05 -473.31 -2.86 -25.48 16 5 C 0.09 3.02 2.46 44.92 0.11 3.13 16 6 H 0.01 0.54 7.67 -2.39 -0.02 0.52 16 7 C -0.13 -3.43 9.41 71.98 0.68 -2.75 16 8 C -0.11 -4.51 4.75 30.60 0.15 -4.36 16 9 C 0.04 2.04 4.80 29.85 0.14 2.19 16 10 C -0.54 -31.46 9.11 25.60 0.23 -31.22 16 11 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 12 C 0.00 0.28 5.46 84.65 0.46 0.74 16 13 N -0.92 -55.52 13.29 21.45 0.28 -55.23 16 14 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 15 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 C 0.27 8.86 6.28 138.75 0.87 9.73 16 19 N -0.50 -18.08 9.31 -187.70 -1.75 -19.83 16 20 C 0.13 4.25 11.30 84.76 0.96 5.20 16 21 C -0.01 -0.37 7.39 22.55 0.17 -0.20 16 22 F -0.12 -3.26 17.30 44.97 0.78 -2.48 16 23 C 0.13 3.31 11.30 84.76 0.96 4.27 16 24 N -0.50 -14.88 10.31 -187.70 -1.94 -16.82 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.35 14.15 5.40 -89.70 -0.48 13.66 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.55 7.31 -2.38 -0.02 1.54 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.01 0.30 6.42 -2.39 -0.02 0.29 16 35 H -0.03 -1.98 8.14 -2.39 -0.02 -1.99 16 36 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.18 5.74 8.06 -2.91 -0.02 5.72 16 38 H 0.22 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -65.92 322.80 2.65 -63.27 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.57 Total: 20.73 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.53 Total: -10.98 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -6.26 Total: -117.36 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.92 2.65 -63.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485861.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.464 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds