Wall clock time and date at job start Mon Mar 30 2020 00:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47242 * 2 1 4 4 C 1.53007 * 109.46928 * 120.00001 * 2 1 3 5 5 C 1.52998 * 109.46880 * 182.93295 * 4 2 1 6 6 C 1.50699 * 109.46983 * 175.01973 * 5 4 2 7 7 H 1.07999 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99866 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99639 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00250 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47239 * 89.99752 * 10 8 6 12 12 H 1.48498 * 109.47328 * 210.00547 * 10 8 6 13 13 H 1.48506 * 109.46843 * 330.00037 * 10 8 6 14 14 N 1.46902 * 109.47145 * 239.99696 * 2 1 3 15 15 C 1.46904 * 110.99847 * 72.81615 * 14 2 1 16 16 C 1.46897 * 111.00088 * 308.86600 * 14 2 1 17 17 C 1.53005 * 109.47026 * 189.99909 * 16 14 2 18 18 C 1.50703 * 109.47005 * 179.97438 * 17 16 14 19 19 C 1.33389 * 125.20252 * 90.00221 * 18 17 16 20 20 C 1.38416 * 114.91916 * 179.97438 * 19 18 17 21 21 C 1.33392 * 114.92456 * 359.97438 * 20 19 18 22 22 S 1.75882 * 125.20108 * 269.69072 * 18 17 16 23 23 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46590 * 299.99954 * 1 2 3 25 25 H 1.09003 * 109.46841 * 60.00271 * 1 2 3 26 26 H 1.08995 * 109.47067 * 302.93204 * 4 2 1 27 27 H 1.09000 * 109.46994 * 62.93806 * 4 2 1 28 28 H 1.08996 * 109.47467 * 295.02378 * 5 4 2 29 29 H 1.09004 * 109.47116 * 55.02221 * 5 4 2 30 30 H 0.97006 * 119.99523 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46874 * 290.00645 * 15 14 2 32 32 H 1.09001 * 109.47279 * 50.00200 * 15 14 2 33 33 H 1.08994 * 109.47403 * 170.00523 * 15 14 2 34 34 H 1.08992 * 109.47656 * 69.99827 * 16 14 2 35 35 H 1.09000 * 109.46945 * 309.99581 * 16 14 2 36 36 H 1.09000 * 109.46991 * 299.99644 * 17 16 14 37 37 H 1.09001 * 109.46933 * 59.99766 * 17 16 14 38 38 H 1.08003 * 122.53473 * 359.95047 * 19 18 17 39 39 H 1.08005 * 122.53799 * 180.02562 * 20 19 18 40 40 H 1.08000 * 125.20451 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5683 -0.6577 1.2868 6 6 4.0646 -1.2597 2.5760 7 1 3.3605 -1.6491 3.2964 8 6 5.4176 -1.3133 2.8359 9 7 5.8508 -1.8392 3.9608 10 14 6.6355 -0.6404 1.5895 11 1 6.8904 0.7950 1.8717 12 1 7.9096 -1.3974 1.6839 13 1 6.0746 -0.7840 0.2220 14 7 2.0198 -0.6926 -1.1994 15 6 1.8132 0.1264 -2.4014 16 6 1.3839 -2.0089 -1.3437 17 6 2.0903 -2.7982 -2.4478 18 6 1.4384 -4.1489 -2.5954 19 6 0.4166 -4.4250 -3.4071 20 6 -0.0160 -5.7394 -3.3740 21 6 0.6549 -6.5310 -2.5358 22 16 1.9136 -5.6041 -1.7294 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6344 -0.2387 2.1385 27 1 1.7203 -1.7630 1.2233 28 1 3.9759 -1.2162 0.4443 29 1 3.8903 0.3818 1.2235 30 1 6.8027 -1.8772 4.1435 31 1 0.7478 0.1809 -2.6252 32 1 2.1997 1.1307 -2.2276 33 1 2.3387 -0.3246 -3.2431 34 1 0.3339 -1.8786 -1.6053 35 1 1.4590 -2.5538 -0.4027 36 1 2.0152 -2.2534 -3.3888 37 1 3.1404 -2.9286 -2.1862 38 1 -0.0390 -3.6792 -4.0418 39 1 -0.8342 -6.0972 -3.9815 40 1 0.4579 -7.5813 -2.3792 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:01 Heat of formation + Delta-G solvation = 23.280057 kcal Electronic energy + Delta-G solvation = -18308.085566 eV Core-core repulsion = 15635.144256 eV Total energy + Delta-G solvation = -2672.941310 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.77623 -37.68864 -33.91272 -32.67468 -31.30887 -29.37742 -27.91091 -25.85787 -25.03271 -23.60257 -22.03599 -20.59740 -19.23460 -18.97769 -17.17098 -16.54544 -15.78664 -15.33433 -14.85722 -14.77113 -14.13074 -13.67785 -13.12860 -13.09038 -12.83822 -12.72998 -12.47056 -12.28052 -12.15259 -12.01969 -11.77307 -11.60598 -11.36216 -11.21267 -10.82340 -10.69594 -10.52627 -10.37555 -9.74069 -9.62113 -9.41662 -8.98770 -8.64212 -8.46124 -8.41278 -7.92324 -5.92754 -3.88875 0.99805 1.66455 2.05443 2.71095 3.40418 3.47440 3.56072 4.13977 4.57691 4.90794 5.01249 5.12695 5.22425 5.26148 5.42891 5.43268 5.48363 5.49139 5.51481 5.63408 5.64961 5.73863 5.92241 5.98120 6.05182 6.17330 6.20886 6.23103 6.27666 6.28759 6.50934 6.55176 6.71596 7.09937 7.38023 7.41768 7.53891 7.73874 7.95759 8.67358 9.13366 9.71581 11.21069 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.005529 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.582875 B = 5062.883505 C = 5997.740595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 H 0.078 0.922 4 C -0.094 4.094 5 C -0.004 4.004 6 C -0.517 4.517 7 H 0.068 0.932 8 C 0.065 3.935 9 N -0.909 5.909 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.527 5.527 15 C 0.022 3.978 16 C 0.060 3.940 17 C -0.050 4.050 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.135 4.135 21 C -0.227 4.227 22 S 0.116 5.884 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.028 0.972 29 H 0.005 0.995 30 H 0.260 0.740 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 -3.375 -16.588 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.030 4.030 3 H 0.096 0.904 4 C -0.132 4.132 5 C -0.041 4.041 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.135 4.135 9 N -0.549 5.549 10 Si 0.705 3.295 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.250 5.250 15 C -0.126 4.126 16 C -0.068 4.068 17 C -0.089 4.089 18 C -0.280 4.280 19 C -0.181 4.181 20 C -0.166 4.166 21 C -0.363 4.363 22 S 0.380 5.620 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.445 -3.847 -15.360 18.969 hybrid contribution -1.289 0.694 -1.663 2.216 sum -11.734 -3.153 -17.023 20.915 Atomic orbital electron populations 1.22487 0.98467 1.01851 1.01426 1.21949 0.91537 0.98362 0.91117 0.90389 1.21546 0.99225 0.98848 0.93580 1.19446 0.91174 0.96150 0.97371 1.21264 0.92584 1.38900 1.02776 0.91434 1.25015 0.98462 0.94951 0.95116 1.69935 1.14423 1.46228 1.24317 0.86796 0.80519 0.78946 0.83226 1.20593 1.21730 1.18450 1.62109 1.57820 1.02650 1.02453 1.22419 0.98679 0.98114 0.93413 1.22141 0.95065 0.90392 0.99212 1.20199 1.00143 0.88810 0.99780 1.24587 1.01825 0.99390 1.02166 1.20068 0.98588 0.97057 1.02360 1.20106 1.02042 0.93406 1.01045 1.25649 1.02554 1.03846 1.04204 1.84724 1.33484 1.00512 1.43243 0.92491 0.92140 0.93483 0.92569 0.92930 0.95351 0.97679 0.92990 0.96064 0.91693 0.91730 0.94756 0.89712 0.90289 0.89565 0.84742 0.84755 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.41 37.16 0.31 -2.14 16 2 C 0.08 1.26 2.32 -67.70 -0.16 1.10 16 3 H 0.08 1.26 7.87 -51.93 -0.41 0.85 16 4 C -0.09 -1.88 4.58 -26.73 -0.12 -2.00 16 5 C 0.00 -0.10 3.85 -27.88 -0.11 -0.21 16 6 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 7 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.77 13.96 55.43 0.77 -27.99 16 10 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 14 N -0.53 -8.10 4.15 -234.88 -0.97 -9.08 16 15 C 0.02 0.27 8.88 60.07 0.53 0.81 16 16 C 0.06 0.86 3.79 -3.82 -0.01 0.84 16 17 C -0.05 -0.65 5.63 -27.88 -0.16 -0.80 16 18 C -0.16 -2.04 5.76 -36.00 -0.21 -2.25 16 19 C -0.15 -1.69 10.05 -41.21 -0.41 -2.10 16 20 C -0.14 -1.41 10.18 -41.21 -0.42 -1.83 16 21 C -0.23 -2.44 11.23 29.04 0.33 -2.11 16 22 S 0.12 1.50 23.33 -107.50 -2.51 -1.01 16 23 H 0.06 0.76 6.54 -51.93 -0.34 0.42 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.56 7.02 -51.93 -0.36 0.20 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 1.06 6.36 -51.93 -0.33 0.73 16 28 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 29 H 0.00 0.12 7.57 -51.93 -0.39 -0.27 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.02 0.24 7.08 -51.93 -0.37 -0.13 16 32 H 0.06 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.06 0.73 6.77 -51.93 -0.35 0.38 16 34 H 0.03 0.45 6.77 -51.93 -0.35 0.10 16 35 H 0.08 1.38 6.18 -51.93 -0.32 1.06 16 36 H 0.08 0.90 6.69 -51.93 -0.35 0.55 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 328.00 15.07 4.94 4.94 Total: -1.00 -31.53 328.00 -9.76 -41.29 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.47 Total: -1.68 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -0.86 Total: -24.28 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: -0.20 Total: -37.07 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.51 Total: -1.01 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.53 -9.76 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.567 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds