Wall clock time and date at job start Mon Mar 30 2020 00:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.47242 * 2 1 4 4 C 1.53007 * 109.46928 * 120.00001 * 2 1 3 5 5 C 1.52998 * 109.46880 * 182.93295 * 4 2 1 6 6 C 1.50699 * 109.46983 * 175.01973 * 5 4 2 7 7 H 1.07999 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99866 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99639 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00250 * 359.97438 * 8 6 5 11 11 H 1.48494 * 109.47239 * 89.99752 * 10 8 6 12 12 H 1.48498 * 109.47328 * 210.00547 * 10 8 6 13 13 H 1.48506 * 109.46843 * 330.00037 * 10 8 6 14 14 N 1.46902 * 109.47145 * 239.99696 * 2 1 3 15 15 C 1.46904 * 110.99847 * 72.81615 * 14 2 1 16 16 C 1.46897 * 111.00088 * 308.86600 * 14 2 1 17 17 C 1.53005 * 109.47026 * 189.99909 * 16 14 2 18 18 C 1.50703 * 109.47005 * 179.97438 * 17 16 14 19 19 C 1.33389 * 125.20252 * 90.00221 * 18 17 16 20 20 C 1.38416 * 114.91916 * 179.97438 * 19 18 17 21 21 C 1.33392 * 114.92456 * 359.97438 * 20 19 18 22 22 S 1.75882 * 125.20108 * 269.69072 * 18 17 16 23 23 H 1.09003 * 109.46799 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46590 * 299.99954 * 1 2 3 25 25 H 1.09003 * 109.46841 * 60.00271 * 1 2 3 26 26 H 1.08995 * 109.47067 * 302.93204 * 4 2 1 27 27 H 1.09000 * 109.46994 * 62.93806 * 4 2 1 28 28 H 1.08996 * 109.47467 * 295.02378 * 5 4 2 29 29 H 1.09004 * 109.47116 * 55.02221 * 5 4 2 30 30 H 0.97006 * 119.99523 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46874 * 290.00645 * 15 14 2 32 32 H 1.09001 * 109.47279 * 50.00200 * 15 14 2 33 33 H 1.08994 * 109.47403 * 170.00523 * 15 14 2 34 34 H 1.08992 * 109.47656 * 69.99827 * 16 14 2 35 35 H 1.09000 * 109.46945 * 309.99581 * 16 14 2 36 36 H 1.09000 * 109.46991 * 299.99644 * 17 16 14 37 37 H 1.09001 * 109.46933 * 59.99766 * 17 16 14 38 38 H 1.08003 * 122.53473 * 359.95047 * 19 18 17 39 39 H 1.08005 * 122.53799 * 180.02562 * 20 19 18 40 40 H 1.08000 * 125.20451 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5683 -0.6577 1.2868 6 6 4.0646 -1.2597 2.5760 7 1 3.3605 -1.6491 3.2964 8 6 5.4176 -1.3133 2.8359 9 7 5.8508 -1.8392 3.9608 10 14 6.6355 -0.6404 1.5895 11 1 6.8904 0.7950 1.8717 12 1 7.9096 -1.3974 1.6839 13 1 6.0746 -0.7840 0.2220 14 7 2.0198 -0.6926 -1.1994 15 6 1.8132 0.1264 -2.4014 16 6 1.3839 -2.0089 -1.3437 17 6 2.0903 -2.7982 -2.4478 18 6 1.4384 -4.1489 -2.5954 19 6 0.4166 -4.4250 -3.4071 20 6 -0.0160 -5.7394 -3.3740 21 6 0.6549 -6.5310 -2.5358 22 16 1.9136 -5.6041 -1.7294 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6344 -0.2387 2.1385 27 1 1.7203 -1.7630 1.2233 28 1 3.9759 -1.2162 0.4443 29 1 3.8903 0.3818 1.2235 30 1 6.8027 -1.8772 4.1435 31 1 0.7478 0.1809 -2.6252 32 1 2.1997 1.1307 -2.2276 33 1 2.3387 -0.3246 -3.2431 34 1 0.3339 -1.8786 -1.6053 35 1 1.4590 -2.5538 -0.4027 36 1 2.0152 -2.2534 -3.3888 37 1 3.1404 -2.9286 -2.1862 38 1 -0.0390 -3.6792 -4.0418 39 1 -0.8342 -6.0972 -3.9815 40 1 0.4579 -7.5813 -2.3792 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:00 Heat of formation + Delta-G solvation = 4.849755 kcal Electronic energy + Delta-G solvation = -18308.884764 eV Core-core repulsion = 15635.144256 eV Total energy + Delta-G solvation = -2673.740508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.92000 -38.61611 -35.62983 -34.28363 -32.83995 -30.85809 -28.86842 -27.30094 -26.35358 -24.69619 -23.17291 -22.42298 -20.30042 -20.08052 -18.81326 -18.09488 -16.92957 -16.37722 -16.29694 -15.90701 -15.83601 -14.87125 -14.67474 -14.43547 -14.07106 -13.98153 -13.66795 -13.52156 -13.32675 -13.17905 -12.98665 -12.82721 -12.74903 -12.62916 -12.25411 -12.04428 -11.71862 -11.64950 -11.52006 -11.36833 -11.29148 -11.04829 -10.71261 -9.53601 -9.42665 -9.04422 -8.25875 -6.27906 0.11901 0.75383 1.17935 1.36257 1.39093 1.53789 1.88014 2.40067 3.04258 3.10733 3.89925 4.05657 4.06563 4.15406 4.27438 4.37882 4.40813 4.53670 4.56883 4.68312 4.68716 4.72375 4.76354 4.88675 4.96545 5.00843 5.01761 5.11019 5.18473 5.23673 5.27978 5.37576 5.41223 5.59249 5.66349 5.70875 5.76702 6.25201 6.33375 6.35114 6.80601 7.36596 8.91336 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.016027 B = 0.005529 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.582875 B = 5062.883505 C = 5997.740595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.085 3.915 3 H 0.081 0.919 4 C -0.089 4.089 5 C 0.006 3.994 6 C -0.529 4.529 7 H 0.026 0.974 8 C 0.003 3.997 9 N -0.956 5.956 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.247 1.247 14 N -0.551 5.551 15 C 0.023 3.977 16 C 0.068 3.932 17 C -0.041 4.041 18 C -0.177 4.177 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.218 4.218 22 S 0.047 5.953 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.023 0.977 29 H 0.009 0.991 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.490 -2.403 -19.791 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.023 4.023 3 H 0.099 0.901 4 C -0.127 4.127 5 C -0.031 4.031 6 C -0.568 4.568 7 H 0.045 0.955 8 C -0.193 4.193 9 N -0.597 5.597 10 Si 0.773 3.227 11 H -0.192 1.192 12 H -0.212 1.212 13 H -0.170 1.170 14 N -0.274 5.274 15 C -0.124 4.124 16 C -0.060 4.060 17 C -0.081 4.081 18 C -0.295 4.295 19 C -0.171 4.171 20 C -0.167 4.167 21 C -0.353 4.353 22 S 0.310 5.690 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.027 0.973 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.176 0.824 39 H 0.183 0.817 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.731 -2.868 -18.576 22.156 hybrid contribution -0.976 0.315 -0.618 1.197 sum -12.707 -2.553 -19.193 23.159 Atomic orbital electron populations 1.22366 0.96100 1.02074 1.02710 1.21741 0.93354 0.97603 0.89579 0.90099 1.21418 0.96271 0.98998 0.95972 1.19309 0.94148 0.95404 0.94282 1.21645 0.92308 1.38791 1.04008 0.95522 1.25992 1.00720 0.95279 0.97261 1.70088 1.15124 1.47881 1.26611 0.85662 0.77609 0.78671 0.80767 1.19163 1.21213 1.17005 1.62039 1.58667 1.03405 1.03339 1.22467 1.00018 0.97757 0.92195 1.22027 0.95997 0.89822 0.98185 1.20084 0.98583 0.89249 1.00148 1.24552 1.03047 0.98660 1.03195 1.20411 0.97412 0.97957 1.01323 1.20478 1.02440 0.92961 1.00842 1.25910 1.01152 1.04730 1.03482 1.84972 1.35994 1.02778 1.45283 0.92783 0.91796 0.91234 0.93304 0.93962 0.95859 0.97281 0.92710 0.94335 0.91402 0.90615 0.93270 0.92841 0.88149 0.91952 0.82423 0.81719 0.80053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.41 71.98 0.61 -3.64 16 2 C 0.09 2.62 2.32 44.92 0.10 2.72 16 3 H 0.08 2.44 7.87 -2.39 -0.02 2.42 16 4 C -0.09 -3.59 4.58 30.60 0.14 -3.45 16 5 C 0.01 0.30 3.85 29.85 0.11 0.41 16 6 C -0.53 -32.03 9.66 25.60 0.25 -31.79 16 7 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 8 C 0.00 0.21 5.47 84.66 0.46 0.67 16 9 N -0.96 -62.30 13.96 21.45 0.30 -62.00 16 10 Si 0.95 46.67 27.47 68.60 1.88 48.55 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 14 N -0.55 -15.95 4.15 -897.01 -3.72 -19.67 16 15 C 0.02 0.50 8.88 127.69 1.13 1.63 16 16 C 0.07 1.86 3.79 86.31 0.33 2.19 16 17 C -0.04 -1.03 5.63 29.85 0.17 -0.86 16 18 C -0.18 -4.28 5.76 24.59 0.14 -4.14 16 19 C -0.14 -2.76 10.05 21.21 0.21 -2.55 16 20 C -0.14 -2.44 10.18 21.21 0.22 -2.23 16 21 C -0.22 -4.32 11.23 66.72 0.75 -3.57 16 22 S 0.05 1.22 23.33 -56.49 -1.32 -0.10 16 23 H 0.05 1.35 6.54 -2.39 -0.02 1.33 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.41 7.02 -2.39 -0.02 1.39 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.04 1.77 6.36 -2.39 -0.02 1.75 16 28 H 0.02 1.16 6.90 -2.39 -0.02 1.15 16 29 H 0.01 0.43 7.57 -2.38 -0.02 0.41 16 30 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 31 H 0.04 0.70 7.08 -2.39 -0.02 0.68 16 32 H 0.07 1.42 7.90 -2.39 -0.02 1.40 16 33 H 0.08 1.45 6.77 -2.39 -0.02 1.43 16 34 H 0.05 1.19 6.77 -2.39 -0.02 1.17 16 35 H 0.05 1.79 6.18 -2.39 -0.01 1.77 16 36 H 0.10 2.02 6.69 -2.39 -0.02 2.00 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -70.08 328.00 2.71 -67.37 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.94 Total: 10.44 kcal Atomic # 6 Polarization: -49.21 SS G_CDS: 4.62 Total: -44.59 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.42 Total: -81.68 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.88 Total: 48.55 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -70.08 2.71 -67.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.216 kcal (2) G-P(sol) polarization free energy of solvation -70.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds