Wall clock time and date at job start Mon Mar 30 2020 00:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.37092 * 120.00495 * 269.99971 * 5 4 3 7 7 H 1.08004 * 120.00428 * 142.44910 * 6 5 4 8 8 C 1.38958 * 119.99887 * 322.45630 * 6 5 4 9 9 N 1.31408 * 119.99711 * 340.09775 * 8 6 5 10 10 Si 1.86797 * 120.00192 * 160.09825 * 8 6 5 11 11 H 1.48495 * 109.47320 * 89.99679 * 10 8 6 12 12 H 1.48497 * 109.47215 * 210.00018 * 10 8 6 13 13 H 1.48503 * 109.47155 * 330.00027 * 10 8 6 14 14 C 1.34783 * 119.99724 * 90.00052 * 5 4 3 15 15 O 1.21289 * 119.99906 * 5.43946 * 14 5 4 16 16 C 1.50702 * 119.99564 * 185.44158 * 14 5 4 17 17 C 1.50706 * 109.46781 * 185.22868 * 16 14 5 18 18 N 1.30890 * 125.88948 * 305.01722 * 17 16 14 19 19 C 1.33650 * 109.76882 * 179.97438 * 18 17 16 20 20 N 1.39603 * 125.61523 * 180.02562 * 19 18 17 21 21 N 1.31206 * 108.77753 * 0.02562 * 19 18 17 22 22 N 1.34337 * 125.89478 * 125.00108 * 17 16 14 23 23 H 0.96998 * 126.76326 * 0.03531 * 22 17 16 24 24 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46418 * 299.99854 * 1 2 3 26 26 H 1.08998 * 109.47425 * 59.99234 * 1 2 3 27 27 H 1.09005 * 109.46418 * 240.00146 * 2 1 3 28 28 H 1.08998 * 109.47425 * 120.00766 * 2 1 3 29 29 H 1.08999 * 109.46561 * 60.00607 * 3 2 1 30 30 H 1.08995 * 109.47175 * 300.00032 * 3 2 1 31 31 H 1.08990 * 109.47246 * 60.00491 * 4 3 2 32 32 H 1.08995 * 109.46923 * 299.99780 * 4 3 2 33 33 H 0.97000 * 120.00115 * 185.16864 * 9 8 6 34 34 H 1.08994 * 109.47541 * 65.22948 * 16 14 5 35 35 H 1.09006 * 109.47415 * 305.22206 * 16 14 5 36 36 H 0.97006 * 119.99626 * 0.02562 * 20 19 18 37 37 H 0.96994 * 120.00630 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2865 3.4706 -1.1869 7 1 4.0531 4.5207 -1.2831 8 6 4.8178 2.7753 -2.2664 9 7 5.4575 1.6445 -2.0689 10 14 4.6227 3.4480 -3.9981 11 1 5.7731 4.3304 -4.3188 12 1 4.5784 2.3215 -4.9646 13 1 3.3615 4.2268 -4.0874 14 6 4.2836 3.4581 1.1675 15 8 4.1771 2.8564 2.2152 16 6 4.6676 4.9154 1.1712 17 6 4.9854 5.3476 2.5795 18 7 4.1964 5.2241 3.6165 19 6 4.8002 5.7120 4.7045 20 7 4.2564 5.7456 5.9899 21 7 5.9881 6.1542 4.3658 22 7 6.1274 5.9257 2.9872 23 1 6.8966 6.1430 2.4375 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 5.8928 1.1974 -2.8116 34 1 3.8392 5.5104 0.7867 35 1 5.5440 5.0619 0.5397 36 1 3.3664 5.3942 6.1493 37 1 4.7687 6.1197 6.7236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180246051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:02 Heat of formation + Delta-G solvation = 47.027023 kcal Electronic energy + Delta-G solvation = -20435.747290 eV Core-core repulsion = 17249.835263 eV Total energy + Delta-G solvation = -3185.912027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53852 -38.53957 -35.40483 -34.49376 -33.91814 -31.76113 -31.53762 -30.83965 -28.75330 -27.26893 -24.92729 -22.95486 -21.52043 -20.68150 -20.22567 -19.08837 -17.71723 -16.89944 -16.22358 -15.79861 -15.34659 -15.00939 -14.77403 -14.57101 -14.21783 -14.07402 -13.25749 -12.93447 -12.56602 -12.22050 -11.95435 -11.85819 -11.43205 -11.32197 -11.20255 -10.97588 -10.83460 -10.58496 -10.47252 -10.33498 -10.24035 -9.70593 -9.43604 -9.25458 -9.14701 -8.45629 -7.99047 -7.48228 -6.41820 -4.12797 2.14477 2.96410 3.05562 3.17438 3.20304 3.56573 3.78760 3.87249 4.06281 4.72378 4.90497 4.94620 5.33440 5.51507 5.56382 5.69066 5.99031 6.02114 6.08768 6.18553 6.27301 6.36224 6.41627 6.46131 6.62291 6.75711 6.77779 6.86899 7.14921 7.31427 7.43641 7.51192 7.65566 7.75946 7.93397 8.32710 8.81593 9.02666 9.48035 9.92674 10.59480 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.006045 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.935392 B = 4630.628316 C = 6014.267886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.115 3.885 5 N -0.439 5.439 6 C -0.347 4.347 7 H 0.089 0.911 8 C 0.047 3.953 9 N -0.858 5.858 10 Si 0.913 3.087 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.479 3.521 15 O -0.579 6.579 16 C -0.052 4.052 17 C 0.341 3.659 18 N -0.541 5.541 19 C 0.470 3.530 20 N -0.828 5.828 21 N -0.384 5.384 22 N -0.488 5.488 23 H 0.437 0.563 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.271 0.729 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.412 0.588 37 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.978 4.362 3.396 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.009 4.009 5 N -0.158 5.158 6 C -0.475 4.475 7 H 0.106 0.894 8 C -0.159 4.159 9 N -0.494 5.494 10 Si 0.739 3.261 11 H -0.203 1.203 12 H -0.207 1.207 13 H -0.192 1.192 14 C 0.265 3.735 15 O -0.462 6.462 16 C -0.095 4.095 17 C 0.061 3.939 18 N -0.274 5.274 19 C 0.098 3.902 20 N -0.385 5.385 21 N -0.225 5.225 22 N -0.207 5.207 23 H 0.282 0.718 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.243 0.757 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -2.843 4.015 4.232 6.490 hybrid contribution 0.359 0.398 -1.190 1.305 sum -2.485 4.414 3.042 5.908 Atomic orbital electron populations 1.21756 0.96664 1.00634 1.01488 1.21429 0.94957 0.97820 1.01560 1.21903 0.97905 0.95414 1.01355 1.21420 0.91098 0.84767 1.03574 1.43329 1.56234 1.12186 1.04073 1.19398 1.43711 0.96041 0.88328 0.89352 1.25371 0.94448 0.95933 1.00183 1.69837 1.29537 1.17405 1.32667 0.86159 0.79080 0.78650 0.82194 1.20266 1.20734 1.19238 1.19753 0.81283 0.87804 0.84634 1.90620 1.56208 1.67620 1.31790 1.20094 1.04844 0.97920 0.86609 1.23700 0.82976 0.90812 0.96412 1.70265 1.33234 1.27114 0.96823 1.20497 0.88322 0.93184 0.88178 1.40849 1.21222 1.73043 1.03385 1.77984 1.18718 1.35059 0.90714 1.47545 1.16331 1.50111 1.06676 0.71823 0.93482 0.93058 0.93049 0.92290 0.92447 0.92972 0.92244 0.87693 0.92789 0.91874 0.86809 0.87075 0.75743 0.76222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.55 5.54 -26.73 -0.15 -2.70 16 4 C 0.11 2.68 5.04 -4.04 -0.02 2.66 16 5 N -0.44 -10.52 2.52 -114.81 -0.29 -10.81 16 6 C -0.35 -8.13 8.53 -14.93 -0.13 -8.26 16 7 H 0.09 1.91 7.23 -52.48 -0.38 1.53 16 8 C 0.05 1.12 5.00 -17.47 -0.09 1.03 16 9 N -0.86 -21.62 11.36 55.50 0.63 -20.99 16 10 Si 0.91 18.26 29.60 -169.99 -5.03 13.22 16 11 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 14 C 0.48 11.27 7.61 -10.98 -0.08 11.19 16 15 O -0.58 -15.39 15.05 5.55 0.08 -15.30 16 16 C -0.05 -0.97 4.95 -29.03 -0.14 -1.12 16 17 C 0.34 6.52 7.08 -155.73 -1.10 5.41 16 18 N -0.54 -11.19 10.45 -11.13 -0.12 -11.31 16 19 C 0.47 8.66 9.44 -321.17 -3.03 5.63 16 20 N -0.83 -11.18 9.13 30.00 0.27 -10.90 16 21 N -0.38 -6.98 12.82 29.99 0.38 -6.60 16 22 N -0.49 -8.18 7.43 32.62 0.24 -7.94 16 23 H 0.44 5.67 8.96 -182.34 -1.63 4.04 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.11 2.59 5.46 -51.93 -0.28 2.31 16 32 H 0.05 1.33 7.35 -51.93 -0.38 0.95 16 33 H 0.27 6.46 8.32 -40.82 -0.34 6.12 16 34 H 0.11 1.91 8.03 -51.93 -0.42 1.49 16 35 H 0.11 1.84 7.86 -51.93 -0.41 1.43 16 36 H 0.41 4.91 8.96 -40.82 -0.37 4.54 16 37 H 0.41 4.33 8.96 -40.82 -0.37 3.96 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -31.64 316.84 -9.91 -41.55 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -6.33 Total: 14.36 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -4.53 Total: 9.95 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 1.13 Total: -68.55 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.64 -9.91 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180246051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.576 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds