Wall clock time and date at job start Mon Mar 30 2020 00:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47377 * 2 1 4 4 C 1.53001 * 109.46855 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.37092 * 120.00495 * 269.99971 * 5 4 3 7 7 H 1.08004 * 120.00428 * 142.44910 * 6 5 4 8 8 C 1.38958 * 119.99887 * 322.45630 * 6 5 4 9 9 N 1.31408 * 119.99711 * 340.09775 * 8 6 5 10 10 Si 1.86797 * 120.00192 * 160.09825 * 8 6 5 11 11 H 1.48495 * 109.47320 * 89.99679 * 10 8 6 12 12 H 1.48497 * 109.47215 * 210.00018 * 10 8 6 13 13 H 1.48503 * 109.47155 * 330.00027 * 10 8 6 14 14 C 1.34783 * 119.99724 * 90.00052 * 5 4 3 15 15 O 1.21289 * 119.99906 * 5.43946 * 14 5 4 16 16 C 1.50702 * 119.99564 * 185.44158 * 14 5 4 17 17 C 1.50706 * 109.46781 * 185.22868 * 16 14 5 18 18 N 1.30890 * 125.88948 * 305.01722 * 17 16 14 19 19 C 1.33650 * 109.76882 * 179.97438 * 18 17 16 20 20 N 1.39603 * 125.61523 * 180.02562 * 19 18 17 21 21 N 1.31206 * 108.77753 * 0.02562 * 19 18 17 22 22 N 1.34337 * 125.89478 * 125.00108 * 17 16 14 23 23 H 0.96998 * 126.76326 * 0.03531 * 22 17 16 24 24 H 1.08996 * 109.47453 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46418 * 299.99854 * 1 2 3 26 26 H 1.08998 * 109.47425 * 59.99234 * 1 2 3 27 27 H 1.09005 * 109.46418 * 240.00146 * 2 1 3 28 28 H 1.08998 * 109.47425 * 120.00766 * 2 1 3 29 29 H 1.08999 * 109.46561 * 60.00607 * 3 2 1 30 30 H 1.08995 * 109.47175 * 300.00032 * 3 2 1 31 31 H 1.08990 * 109.47246 * 60.00491 * 4 3 2 32 32 H 1.08995 * 109.46923 * 299.99780 * 4 3 2 33 33 H 0.97000 * 120.00115 * 185.16864 * 9 8 6 34 34 H 1.08994 * 109.47541 * 65.22948 * 16 14 5 35 35 H 1.09006 * 109.47415 * 305.22206 * 16 14 5 36 36 H 0.97006 * 119.99626 * 0.02562 * 20 19 18 37 37 H 0.96994 * 120.00630 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2865 3.4706 -1.1869 7 1 4.0531 4.5207 -1.2831 8 6 4.8178 2.7753 -2.2664 9 7 5.4575 1.6445 -2.0689 10 14 4.6227 3.4480 -3.9981 11 1 5.7731 4.3304 -4.3188 12 1 4.5784 2.3215 -4.9646 13 1 3.3615 4.2268 -4.0874 14 6 4.2836 3.4581 1.1675 15 8 4.1771 2.8564 2.2152 16 6 4.6676 4.9154 1.1712 17 6 4.9854 5.3476 2.5795 18 7 4.1964 5.2241 3.6165 19 6 4.8002 5.7120 4.7045 20 7 4.2564 5.7456 5.9899 21 7 5.9881 6.1542 4.3658 22 7 6.1274 5.9257 2.9872 23 1 6.8966 6.1430 2.4375 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 3.9330 0.9287 -0.8908 32 1 3.9337 0.9284 0.8891 33 1 5.8928 1.1974 -2.8116 34 1 3.8392 5.5104 0.7867 35 1 5.5440 5.0619 0.5397 36 1 3.3664 5.3942 6.1493 37 1 4.7687 6.1197 6.7236 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180246051.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:01 Heat of formation + Delta-G solvation = 27.699260 kcal Electronic energy + Delta-G solvation = -20436.585405 eV Core-core repulsion = 17249.835263 eV Total energy + Delta-G solvation = -3186.750142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.94303 -40.35790 -37.14144 -35.78145 -35.49923 -33.39882 -33.19217 -32.23296 -30.25774 -28.75801 -26.72988 -24.51655 -22.91731 -22.11126 -21.76520 -20.87908 -19.11582 -18.59413 -17.82739 -17.21093 -16.65370 -16.49876 -16.47225 -16.11945 -15.87641 -15.67667 -14.64296 -14.53848 -14.16164 -13.74934 -13.47897 -13.38662 -13.04535 -12.84555 -12.75749 -12.53981 -12.23772 -12.11296 -11.98154 -11.91658 -11.77048 -11.37900 -10.97329 -10.88046 -10.70676 -10.30023 -9.35442 -9.24775 -8.22623 -5.99591 0.71550 1.47763 1.56770 1.66156 1.69726 2.06319 2.16483 2.38128 2.52635 3.04045 3.17549 3.53116 3.92249 4.11496 4.18475 4.33883 4.46234 4.58988 4.59792 4.68507 4.89121 4.92974 5.03275 5.07651 5.12317 5.21988 5.39062 5.40101 5.47992 5.52754 5.65570 6.11201 6.22727 6.43930 6.49580 6.64696 7.19705 7.52137 7.64957 8.10517 8.80081 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.006045 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.935392 B = 4630.628316 C = 6014.267886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.116 3.884 5 N -0.449 5.449 6 C -0.357 4.357 7 H 0.109 0.891 8 C 0.007 3.993 9 N -0.895 5.895 10 Si 0.981 3.019 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.259 1.259 14 C 0.465 3.535 15 O -0.618 6.618 16 C -0.040 4.040 17 C 0.331 3.669 18 N -0.576 5.576 19 C 0.456 3.544 20 N -0.811 5.811 21 N -0.393 5.393 22 N -0.474 5.474 23 H 0.452 0.548 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.027 0.973 33 H 0.271 0.729 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.420 0.580 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 5.522 2.549 7.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.008 4.008 5 N -0.167 5.167 6 C -0.484 4.484 7 H 0.127 0.873 8 C -0.196 4.196 9 N -0.532 5.532 10 Si 0.805 3.195 11 H -0.195 1.195 12 H -0.215 1.215 13 H -0.183 1.183 14 C 0.253 3.747 15 O -0.505 6.505 16 C -0.082 4.082 17 C 0.051 3.949 18 N -0.311 5.311 19 C 0.084 3.916 20 N -0.370 5.370 21 N -0.235 5.235 22 N -0.195 5.195 23 H 0.300 0.700 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.252 0.748 37 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.422 5.204 3.396 7.094 hybrid contribution 0.581 0.002 -0.865 1.042 sum -2.840 5.206 2.532 6.448 Atomic orbital electron populations 1.21708 0.94140 1.02271 1.01832 1.21414 0.97132 0.95414 1.01531 1.21758 0.95438 0.97548 1.00469 1.21357 0.93203 0.84809 1.01428 1.43603 1.56127 1.12270 1.04730 1.19859 1.43504 0.96992 0.88087 0.87340 1.26189 0.93781 0.96038 1.03630 1.69961 1.30658 1.18907 1.33706 0.85106 0.79413 0.77743 0.77215 1.19469 1.21543 1.18289 1.20519 0.80587 0.89705 0.83861 1.90588 1.57812 1.69060 1.32996 1.20017 1.06454 0.94598 0.87117 1.23676 0.83628 0.91304 0.96330 1.70220 1.34692 1.28248 0.97937 1.20927 0.88407 0.93039 0.89204 1.40878 1.21600 1.72343 1.02169 1.77929 1.18761 1.35563 0.91226 1.47465 1.16294 1.49244 1.06453 0.69954 0.91228 0.92994 0.92433 0.92085 0.92764 0.94318 0.92334 0.89111 0.95393 0.91904 0.84728 0.84883 0.74847 0.74563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.06 16 2 C -0.12 -3.88 5.93 30.59 0.18 -3.70 16 3 C -0.11 -4.60 5.54 30.59 0.17 -4.43 16 4 C 0.12 5.55 5.04 86.38 0.44 5.98 16 5 N -0.45 -21.63 2.52 -635.54 -1.60 -23.24 16 6 C -0.36 -16.39 8.53 84.04 0.72 -15.67 16 7 H 0.11 4.44 7.23 -2.91 -0.02 4.42 16 8 C 0.01 0.32 5.00 84.93 0.42 0.74 16 9 N -0.90 -45.35 11.36 21.67 0.25 -45.10 16 10 Si 0.98 36.37 29.60 68.60 2.03 38.40 16 11 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 12 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 14 C 0.47 22.01 7.61 87.66 0.67 22.68 16 15 O -0.62 -33.65 15.05 -3.06 -0.05 -33.69 16 16 C -0.04 -1.44 4.95 29.10 0.14 -1.29 16 17 C 0.33 12.36 7.08 138.24 0.98 13.34 16 18 N -0.58 -23.60 10.45 -189.11 -1.98 -25.58 16 19 C 0.46 16.42 9.44 260.92 2.46 18.89 16 20 N -0.81 -20.93 9.13 -59.01 -0.54 -21.47 16 21 N -0.39 -13.84 12.82 -59.03 -0.76 -14.59 16 22 N -0.47 -15.29 7.43 -50.72 -0.38 -15.66 16 23 H 0.45 10.99 8.96 -213.11 -1.91 9.08 16 24 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.09 4.62 5.46 -2.39 -0.01 4.61 16 32 H 0.03 1.44 7.35 -2.39 -0.02 1.42 16 33 H 0.27 13.03 8.32 -92.71 -0.77 12.26 16 34 H 0.14 4.26 8.03 -2.39 -0.02 4.24 16 35 H 0.13 4.15 7.86 -2.38 -0.02 4.13 16 36 H 0.42 9.56 8.96 -92.70 -0.83 8.73 16 37 H 0.42 8.31 8.96 -92.71 -0.83 7.48 16 Total: -1.00 -68.18 316.84 1.43 -66.75 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -2.45 Total: 40.70 kcal Atomic # 6 Polarization: 26.59 SS G_CDS: 6.89 Total: 33.48 kcal Atomic # 7 Polarization: -140.64 SS G_CDS: -5.01 Total: -145.65 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.05 Total: -33.69 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -68.18 1.43 -66.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180246051.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.450 kcal (2) G-P(sol) polarization free energy of solvation -68.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds