Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99926 * 2 1 4 4 H 1.48490 * 109.47291 * 270.00181 * 3 2 1 5 5 H 1.48501 * 109.46800 * 30.00330 * 3 2 1 6 6 H 1.48500 * 109.47035 * 149.99726 * 3 2 1 7 7 C 1.37870 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46622 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99894 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99954 * 179.97438 * 13 12 11 16 16 H 1.09003 * 115.55374 * 32.34230 * 15 13 12 17 17 C 1.53057 * 117.50749 * 178.04201 * 15 13 12 18 18 C 1.52731 * 59.93801 * 107.46834 * 17 15 13 19 19 C 1.53267 * 117.81179 * 252.27506 * 18 17 15 20 20 C 1.53393 * 108.36543 * 163.62432 * 19 18 17 21 21 C 1.53055 * 109.08406 * 53.64058 * 20 19 18 22 22 O 1.42829 * 109.82930 * 299.23648 * 21 20 19 23 23 C 1.43124 * 114.09324 * 64.23115 * 22 21 20 24 24 H 0.96997 * 120.00101 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47284 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.46832 * 299.99765 * 9 7 2 27 27 H 1.08999 * 109.47735 * 60.00145 * 10 9 7 28 28 H 1.08998 * 109.47039 * 299.99422 * 10 9 7 29 29 H 1.08994 * 109.47125 * 299.99902 * 11 10 9 30 30 H 1.08999 * 109.47444 * 59.99924 * 11 10 9 31 31 H 0.97000 * 120.00281 * 359.97438 * 12 11 10 32 32 H 1.08994 * 117.51037 * 214.94066 * 17 15 13 33 33 H 1.09000 * 117.50279 * 359.96782 * 17 15 13 34 34 H 1.08992 * 109.68732 * 283.34901 * 19 18 17 35 35 H 1.09003 * 109.68215 * 43.87420 * 19 18 17 36 36 H 1.09006 * 109.53341 * 173.51964 * 20 19 18 37 37 H 1.09005 * 109.53778 * 293.67706 * 20 19 18 38 38 H 1.09000 * 109.41031 * 59.34223 * 21 20 19 39 39 H 1.09002 * 109.41303 * 179.19835 * 21 20 19 40 40 H 1.08998 * 109.59772 * 182.80521 * 23 22 21 41 41 H 1.08998 * 109.59195 * 62.35605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6365 -0.0022 12 7 6.0398 -4.0177 -0.0040 13 6 7.3649 -4.2640 -0.0037 14 8 8.1531 -3.3421 -0.0025 15 6 7.8673 -5.6848 -0.0049 16 1 7.2409 -6.4045 -0.5319 17 6 9.3821 -5.8990 -0.0509 18 6 8.6097 -6.1717 1.2381 19 6 8.7834 -5.1851 2.3982 20 6 7.6412 -5.4082 3.3975 21 6 7.6039 -6.8863 3.7931 22 8 7.3698 -7.6915 2.6369 23 6 8.4152 -7.6310 1.6612 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8744 -0.6800 -0.8911 27 1 3.6578 -3.1499 -0.8924 28 1 3.6585 -3.1509 0.8875 29 1 5.9148 -2.1219 -0.8917 30 1 5.9148 -2.1234 0.8882 31 1 5.4095 -4.7550 -0.0045 32 1 9.7522 -6.7598 -0.6077 33 1 10.0152 -5.0122 -0.0809 34 1 9.7404 -5.3606 2.8892 35 1 8.7467 -4.1635 2.0199 36 1 7.8087 -4.7975 4.2847 37 1 6.6937 -5.1291 2.9364 38 1 8.5573 -7.1653 4.2418 39 1 6.8028 -7.0482 4.5143 40 1 8.1400 -8.2296 0.7929 41 1 9.3404 -8.0127 2.0928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183739892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = -81.284260 kcal Electronic energy + Delta-G solvation = -20413.748414 eV Core-core repulsion = 17293.519984 eV Total energy + Delta-G solvation = -3120.228430 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.69966 -38.90456 -36.48180 -35.34235 -33.30094 -32.92629 -31.45548 -28.66411 -27.37871 -25.56062 -24.38771 -22.50600 -22.20753 -20.73867 -20.14005 -19.02279 -17.13033 -16.81041 -16.51146 -16.29768 -15.60211 -15.43012 -15.12035 -14.57859 -14.24581 -13.97979 -13.58843 -13.40102 -13.11842 -12.89221 -12.70903 -12.24552 -12.04799 -11.91406 -11.66297 -11.36136 -11.08777 -10.99304 -10.89747 -10.55123 -10.27019 -10.07290 -9.97858 -9.80703 -9.71791 -9.47510 -9.23216 -8.84164 -8.56063 -6.06728 -4.05486 2.47649 3.25004 3.30705 3.38219 3.40537 3.42367 3.81806 4.31176 4.35660 4.43868 4.50881 4.56110 4.77269 4.88436 4.96868 5.10909 5.20026 5.23620 5.27298 5.31629 5.45332 5.53128 5.57387 5.63905 5.65456 5.78521 5.83498 6.00543 6.01430 6.03419 6.35809 6.43848 6.70060 6.78877 6.88444 7.21994 7.35408 7.64579 7.76339 8.33498 8.50097 8.97177 9.55497 11.06560 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.003603 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.452138 B = 7770.306948 C = 8121.641717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.115 3.885 12 N -0.720 5.720 13 C 0.541 3.459 14 O -0.547 6.547 15 C -0.176 4.176 16 H 0.123 0.877 17 C -0.135 4.135 18 C -0.134 4.134 19 C -0.096 4.096 20 C -0.154 4.154 21 C 0.062 3.938 22 O -0.378 6.378 23 C 0.099 3.901 24 H 0.263 0.737 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.401 0.599 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.347 -15.979 4.329 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.370 5.370 13 C 0.327 3.673 14 O -0.425 6.425 15 C -0.197 4.197 16 H 0.141 0.859 17 C -0.172 4.172 18 C -0.135 4.135 19 C -0.133 4.133 20 C -0.192 4.192 21 C -0.015 4.015 22 O -0.296 6.296 23 C 0.022 3.978 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.561 -15.283 4.312 25.195 hybrid contribution 0.114 0.800 -0.100 0.814 sum 19.674 -14.483 4.212 24.791 Atomic orbital electron populations 1.69911 1.06311 1.26955 1.51008 1.25023 0.94744 0.99216 0.94467 0.86777 0.80389 0.83553 0.78594 1.20236 1.21345 1.18938 1.21099 0.89302 0.94525 1.51079 0.90996 1.19502 0.97290 0.91470 0.96615 1.21706 0.90601 1.01027 1.01785 1.21651 0.96180 0.81157 1.01821 1.46100 1.06597 1.09976 1.74324 1.19528 0.82524 0.89428 0.75804 1.90671 1.55527 1.46003 1.50314 1.22387 0.97085 0.96126 1.04150 0.85883 1.23008 0.92160 1.03851 0.98196 1.22163 1.03710 0.97417 0.90179 1.21347 0.98469 0.99302 0.94184 1.22185 0.99996 0.97186 0.99825 1.22551 1.01395 0.90004 0.87566 1.87984 1.44554 1.67052 1.30012 1.22210 0.91216 0.92125 0.92257 0.92690 0.96344 0.96778 0.92095 0.92073 0.91825 0.91890 0.76498 0.87807 0.87134 0.91141 0.89741 0.90641 0.90731 0.93278 0.88787 0.88541 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 11 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -10.09 5.56 -60.29 -0.33 -10.43 16 13 C 0.54 7.72 6.55 -10.98 -0.07 7.65 16 14 O -0.55 -9.66 14.99 5.56 0.08 -9.58 16 15 C -0.18 -1.87 5.88 -91.87 -0.54 -2.41 16 16 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 17 C -0.13 -1.23 9.51 -26.84 -0.26 -1.48 16 18 C -0.13 -1.26 2.14 -154.54 -0.33 -1.59 16 19 C -0.10 -0.99 5.45 -26.39 -0.14 -1.13 16 20 C -0.15 -1.51 6.16 -26.50 -0.16 -1.68 16 21 C 0.06 0.54 6.72 37.19 0.25 0.79 16 22 O -0.38 -3.89 10.77 -35.23 -0.38 -4.27 16 23 C 0.10 0.80 6.63 37.25 0.25 1.05 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.40 4.74 8.47 -40.82 -0.35 4.39 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.18 7.67 -51.93 -0.40 0.78 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.10 5.95 -51.93 -0.31 0.79 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -32.81 331.60 -8.14 -40.96 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.90 Total: 1.05 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -1.72 Total: -12.81 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.44 Total: -37.48 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.30 Total: -13.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.81 -8.14 -40.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183739892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.326 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds