Wall clock time and date at job start Mon Mar 30 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99926 * 2 1 4 4 H 1.48490 * 109.47291 * 270.00181 * 3 2 1 5 5 H 1.48501 * 109.46800 * 30.00330 * 3 2 1 6 6 H 1.48500 * 109.47035 * 149.99726 * 3 2 1 7 7 C 1.37870 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00441 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99962 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46622 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46833 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99894 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00049 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99954 * 179.97438 * 13 12 11 16 16 H 1.09003 * 115.55374 * 32.34230 * 15 13 12 17 17 C 1.53057 * 117.50749 * 178.04201 * 15 13 12 18 18 C 1.52731 * 59.93801 * 107.46834 * 17 15 13 19 19 C 1.53267 * 117.81179 * 252.27506 * 18 17 15 20 20 C 1.53393 * 108.36543 * 163.62432 * 19 18 17 21 21 C 1.53055 * 109.08406 * 53.64058 * 20 19 18 22 22 O 1.42829 * 109.82930 * 299.23648 * 21 20 19 23 23 C 1.43124 * 114.09324 * 64.23115 * 22 21 20 24 24 H 0.96997 * 120.00101 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47284 * 60.00103 * 9 7 2 26 26 H 1.08998 * 109.46832 * 299.99765 * 9 7 2 27 27 H 1.08999 * 109.47735 * 60.00145 * 10 9 7 28 28 H 1.08998 * 109.47039 * 299.99422 * 10 9 7 29 29 H 1.08994 * 109.47125 * 299.99902 * 11 10 9 30 30 H 1.08999 * 109.47444 * 59.99924 * 11 10 9 31 31 H 0.97000 * 120.00281 * 359.97438 * 12 11 10 32 32 H 1.08994 * 117.51037 * 214.94066 * 17 15 13 33 33 H 1.09000 * 117.50279 * 359.96782 * 17 15 13 34 34 H 1.08992 * 109.68732 * 283.34901 * 19 18 17 35 35 H 1.09003 * 109.68215 * 43.87420 * 19 18 17 36 36 H 1.09006 * 109.53341 * 173.51964 * 20 19 18 37 37 H 1.09005 * 109.53778 * 293.67706 * 20 19 18 38 38 H 1.09000 * 109.41031 * 59.34223 * 21 20 19 39 39 H 1.09002 * 109.41303 * 179.19835 * 21 20 19 40 40 H 1.08998 * 109.59772 * 182.80521 * 23 22 21 41 41 H 1.08998 * 109.59195 * 62.35605 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6365 -0.0022 12 7 6.0398 -4.0177 -0.0040 13 6 7.3649 -4.2640 -0.0037 14 8 8.1531 -3.3421 -0.0025 15 6 7.8673 -5.6848 -0.0049 16 1 7.2409 -6.4045 -0.5319 17 6 9.3821 -5.8990 -0.0509 18 6 8.6097 -6.1717 1.2381 19 6 8.7834 -5.1851 2.3982 20 6 7.6412 -5.4082 3.3975 21 6 7.6039 -6.8863 3.7931 22 8 7.3698 -7.6915 2.6369 23 6 8.4152 -7.6310 1.6612 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8744 -0.6800 -0.8911 27 1 3.6578 -3.1499 -0.8924 28 1 3.6585 -3.1509 0.8875 29 1 5.9148 -2.1219 -0.8917 30 1 5.9148 -2.1234 0.8882 31 1 5.4095 -4.7550 -0.0045 32 1 9.7522 -6.7598 -0.6077 33 1 10.0152 -5.0122 -0.0809 34 1 9.7404 -5.3606 2.8892 35 1 8.7467 -4.1635 2.0199 36 1 7.8087 -4.7975 4.2847 37 1 6.6937 -5.1291 2.9364 38 1 8.5573 -7.1653 4.2418 39 1 6.8028 -7.0482 4.5143 40 1 8.1400 -8.2296 0.7929 41 1 9.3404 -8.0127 2.0928 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183739892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:43 Heat of formation + Delta-G solvation = -103.608258 kcal Electronic energy + Delta-G solvation = -20414.716455 eV Core-core repulsion = 17293.519984 eV Total energy + Delta-G solvation = -3121.196471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -41.60140 -39.85614 -37.45177 -36.67099 -35.15491 -33.68380 -33.29238 -29.64360 -28.83299 -26.31014 -25.66665 -23.79948 -23.07796 -22.27129 -21.27087 -19.98763 -18.95706 -18.05586 -17.35613 -17.01154 -16.89218 -16.57301 -16.18802 -15.99617 -15.51312 -15.26105 -14.80827 -14.61466 -14.16924 -13.92390 -13.84208 -13.75086 -13.53196 -13.02307 -12.76941 -12.72857 -12.36251 -12.14290 -11.96374 -11.81166 -11.67120 -11.62853 -11.36425 -11.30865 -11.01448 -10.78044 -10.69995 -10.39804 -10.07357 -8.31044 -6.35236 1.35339 1.36826 1.44424 1.48703 2.15987 2.34746 2.65123 3.04530 3.12295 3.52158 3.59869 3.76455 3.82909 3.99916 4.02850 4.13102 4.15984 4.19422 4.42838 4.46303 4.52319 4.64473 4.69150 4.81399 4.82003 4.84468 4.88652 4.93600 4.99976 5.03666 5.08797 5.23703 5.25208 5.37665 5.47550 5.52058 5.62970 6.25042 6.25492 6.54799 6.72664 7.22539 7.29684 8.85488 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.028149 B = 0.003603 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.452138 B = 7770.306948 C = 8121.641717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.715 5.715 13 C 0.538 3.462 14 O -0.585 6.585 15 C -0.188 4.188 16 H 0.147 0.853 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.098 4.098 20 C -0.153 4.153 21 C 0.062 3.938 22 O -0.397 6.397 23 C 0.098 3.902 24 H 0.267 0.733 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.413 0.587 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.475 -17.176 4.418 27.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.055 0.945 9 C -0.049 4.049 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.366 5.366 13 C 0.326 3.674 14 O -0.466 6.466 15 C -0.209 4.209 16 H 0.164 0.836 17 C -0.161 4.161 18 C -0.128 4.128 19 C -0.135 4.135 20 C -0.190 4.190 21 C -0.014 4.014 22 O -0.316 6.316 23 C 0.022 3.978 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.249 0.751 32 H 0.155 0.845 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.690 -16.517 4.400 27.616 hybrid contribution -0.581 1.123 -0.111 1.269 sum 21.110 -15.394 4.289 26.476 Atomic orbital electron populations 1.70055 1.08209 1.28180 1.52591 1.25976 0.95594 1.03412 0.94144 0.85695 0.79464 0.78510 0.79232 1.19165 1.20869 1.17281 1.21453 0.91846 0.93290 1.50411 0.94482 1.19459 0.94147 0.94555 0.96750 1.21477 0.92017 0.98194 1.02078 1.21275 0.94390 0.82754 1.01123 1.45971 1.07159 1.09179 1.74245 1.20180 0.81912 0.90807 0.74482 1.90650 1.56349 1.47646 1.51980 1.22445 0.98496 0.93944 1.06028 0.83570 1.23092 0.90651 1.04207 0.98114 1.22244 1.02940 0.98085 0.89577 1.21327 0.99454 0.97847 0.94893 1.22165 0.98546 0.98526 0.99795 1.22612 1.02680 0.88703 0.87441 1.87962 1.45740 1.67184 1.30684 1.22405 0.91710 0.91013 0.92653 0.92448 0.96171 0.96213 0.91718 0.91926 0.92452 0.92765 0.75102 0.84509 0.89057 0.89592 0.92954 0.90015 0.93125 0.91425 0.88170 0.86727 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.44 0.30 -59.40 16 2 C 0.01 0.33 5.47 84.65 0.46 0.80 16 3 Si 0.95 44.72 27.47 68.60 1.88 46.61 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.53 -30.59 9.66 25.60 0.25 -30.34 16 8 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.10 -3.72 5.27 30.60 0.16 -3.55 16 11 C 0.13 4.24 5.67 86.38 0.49 4.73 16 12 N -0.71 -19.55 5.56 -463.05 -2.57 -22.12 16 13 C 0.54 15.05 6.55 87.66 0.57 15.62 16 14 O -0.59 -20.84 14.99 -3.03 -0.05 -20.89 16 15 C -0.19 -3.62 5.88 -11.60 -0.07 -3.69 16 16 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.12 -1.95 9.51 30.52 0.29 -1.66 16 18 C -0.13 -2.12 2.14 -52.20 -0.11 -2.23 16 19 C -0.10 -1.92 5.45 30.82 0.17 -1.76 16 20 C -0.15 -2.86 6.16 30.74 0.19 -2.67 16 21 C 0.06 0.95 6.72 72.00 0.48 1.44 16 22 O -0.40 -7.16 10.77 -148.98 -1.60 -8.77 16 23 C 0.10 1.27 6.63 72.04 0.48 1.75 16 24 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 25 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 26 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 27 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.41 9.29 8.47 -92.71 -0.79 8.50 16 32 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.85 7.67 -2.39 -0.02 1.83 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 1.38 5.95 -2.39 -0.01 1.37 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -72.11 331.60 1.61 -70.49 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.17 Total: 16.05 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.49 Total: -21.97 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.27 Total: -81.53 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -1.65 Total: -29.65 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -72.11 1.61 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183739892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.114 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds