Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48498 * 109.47146 * 239.99984 * 3 2 1 5 5 H 1.48502 * 109.46753 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47152 * 119.99820 * 3 2 1 7 7 C 1.37877 * 120.00133 * 179.97438 * 2 1 3 8 8 C 1.51273 * 120.84673 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53878 * 231.32066 * 8 7 2 10 10 C 1.52958 * 109.40205 * 305.37783 * 9 8 7 11 11 H 1.09003 * 109.41196 * 303.55288 * 10 9 8 12 12 N 1.46505 * 109.41044 * 183.70225 * 10 9 8 13 13 C 1.34777 * 120.00042 * 155.00004 * 12 10 9 14 14 O 1.21516 * 120.00008 * 359.97438 * 13 12 10 15 15 O 1.34638 * 120.00050 * 179.97438 * 13 12 10 16 16 C 1.45203 * 116.99865 * 179.97438 * 15 13 12 17 17 C 1.54892 * 110.59975 * 93.31702 * 16 15 13 18 18 C 1.54888 * 102.74611 * 156.67290 * 17 16 15 19 19 C 1.54265 * 104.19721 * 322.05788 * 18 17 16 20 20 C 1.53873 * 106.59997 * 23.61451 * 19 18 17 21 21 C 1.52961 * 109.82090 * 63.59622 * 10 9 8 22 22 C 1.51269 * 120.85502 * 179.97438 * 7 2 1 23 23 H 0.96997 * 120.00195 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.62712 * 111.60873 * 8 7 2 25 25 H 1.09002 * 109.62975 * 351.03897 * 8 7 2 26 26 H 1.08994 * 109.48606 * 185.39426 * 9 8 7 27 27 H 1.09007 * 109.47931 * 65.34965 * 9 8 7 28 28 H 0.97000 * 120.00281 * 334.98822 * 12 10 9 29 29 H 1.09002 * 110.43614 * 330.69919 * 16 15 13 30 30 H 1.08992 * 110.75663 * 274.99152 * 17 16 15 31 31 H 1.09000 * 110.75339 * 38.36176 * 17 16 15 32 32 H 1.09007 * 110.48520 * 203.37936 * 18 17 16 33 33 H 1.08996 * 110.48377 * 80.74349 * 18 17 16 34 34 H 1.08993 * 110.03585 * 264.31946 * 19 18 17 35 35 H 1.09005 * 110.02598 * 142.89513 * 19 18 17 36 36 H 1.09002 * 110.03017 * 240.71676 * 20 19 18 37 37 H 1.08996 * 110.07624 * 119.30418 * 20 19 18 38 38 H 1.08994 * 109.48455 * 56.37921 * 21 10 9 39 39 H 1.08996 * 109.48260 * 176.42308 * 21 10 9 40 40 H 1.08996 * 109.62519 * 248.39320 * 22 7 2 41 41 H 1.09001 * 109.62026 * 8.77318 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8228 -3.3827 1.1351 10 6 3.3398 -3.5070 0.9839 11 1 3.5738 -3.9112 -0.0010 12 7 3.8597 -4.4076 2.0159 13 6 5.0173 -5.0676 1.8135 14 8 5.6294 -4.9161 0.7748 15 8 5.4953 -5.8949 2.7620 16 6 6.7469 -6.5730 2.4755 17 6 7.9447 -5.7650 3.0337 18 6 9.0414 -6.8468 3.1947 19 6 8.2747 -8.0931 3.6834 20 6 6.8158 -7.9190 3.2260 21 6 3.9906 -2.1310 1.1351 22 6 3.5171 -1.2166 0.0000 23 1 -0.4850 0.8400 0.0004 24 1 1.4199 -3.0193 -0.9538 25 1 0.2035 -2.3409 0.1600 26 1 1.3705 -4.3733 1.0900 27 1 1.5898 -2.9197 2.0940 28 1 3.3710 -4.5288 2.8450 29 1 6.8586 -6.7284 1.4024 30 1 8.2584 -4.9994 2.3243 31 1 7.6956 -5.3211 3.9976 32 1 9.7774 -6.5365 3.9365 33 1 9.5236 -7.0464 2.2378 34 1 8.3202 -8.1570 4.7705 35 1 8.7009 -8.9920 3.2379 36 1 6.1532 -7.8983 4.0913 37 1 6.5331 -8.7334 2.5590 38 1 3.7063 -1.6977 2.0940 39 1 5.0747 -2.2347 1.0900 40 1 3.8771 -1.6007 -0.9544 41 1 3.8982 -0.2073 0.1557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193576747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = -115.814740 kcal Electronic energy + Delta-G solvation = -20727.066378 eV Core-core repulsion = 17605.340595 eV Total energy + Delta-G solvation = -3121.725784 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.33484 -38.30040 -36.92432 -35.38027 -33.77280 -31.57131 -29.70310 -28.98970 -28.34761 -27.05188 -22.85335 -21.58328 -21.17643 -20.66045 -20.30233 -19.64010 -18.38525 -16.67205 -16.14950 -15.77630 -15.71573 -15.08492 -14.45513 -14.38361 -13.66338 -13.36614 -12.98503 -12.85958 -12.57965 -12.40184 -12.12726 -12.02569 -11.63242 -11.50402 -11.35704 -11.04891 -10.87944 -10.81393 -10.74079 -10.70206 -10.41007 -10.26170 -10.11450 -9.98895 -9.74954 -9.05378 -8.92057 -8.49854 -8.39871 -6.12401 -4.03386 2.46366 3.16950 3.29402 3.35788 3.37910 4.29521 4.34305 4.37951 4.43615 4.72676 5.13093 5.16004 5.19317 5.21112 5.35374 5.36194 5.61338 5.63026 5.67512 5.78432 5.81481 5.87878 5.97413 6.04998 6.15476 6.40566 6.45331 6.59095 6.68255 6.79685 6.86572 6.93083 7.04216 7.18942 7.40943 7.62002 7.68846 7.74264 7.89216 8.35366 8.70987 8.93476 9.52556 10.97208 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041271 B = 0.003848 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.283351 B = 7274.842202 C = 7713.652815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.492 4.492 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.170 3.830 11 H 0.081 0.919 12 N -0.702 5.702 13 C 0.641 3.359 14 O -0.575 6.575 15 O -0.370 6.370 16 C 0.102 3.898 17 C -0.142 4.142 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.008 4.008 23 H 0.265 0.735 24 H 0.007 0.993 25 H 0.063 0.937 26 H 0.038 0.962 27 H 0.057 0.943 28 H 0.400 0.600 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.021 0.979 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -13.220 8.116 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.720 3.280 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.511 4.511 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.069 3.931 11 H 0.099 0.901 12 N -0.359 5.359 13 C 0.393 3.607 14 O -0.464 6.464 15 O -0.284 6.284 16 C 0.046 3.954 17 C -0.180 4.180 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.046 4.046 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.234 0.766 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.040 0.960 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 12.600 -13.077 7.604 19.687 hybrid contribution 0.279 0.919 0.418 1.048 sum 12.879 -12.157 8.022 19.443 Atomic orbital electron populations 1.69814 1.06141 1.27139 1.49634 1.24829 0.94732 0.98575 0.94410 0.86646 0.79393 0.82915 0.79077 1.19949 1.21855 1.19979 1.20041 0.89317 0.91526 1.50182 1.19345 0.98772 0.92683 0.91597 1.21973 0.91793 0.98894 1.02634 1.21128 0.94424 0.88211 0.89377 0.90101 1.45333 1.21503 1.46322 1.22779 1.18287 0.82156 0.78385 0.81849 1.90962 1.59893 1.68032 1.27559 1.86287 1.40369 1.56603 1.45172 1.23526 0.79889 0.91034 1.00978 1.22914 0.94603 0.98305 1.02148 1.22275 0.97377 0.94755 1.01643 1.22082 0.94222 0.98371 1.01178 1.22221 0.97644 0.95187 1.01009 1.21957 0.97423 0.95110 1.01010 1.19597 0.96584 0.94544 0.93881 0.92472 0.97418 0.91887 0.94327 0.92448 0.76631 0.88972 0.90608 0.90437 0.91079 0.91193 0.91312 0.91362 0.90226 0.90851 0.92818 0.94341 0.96044 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.73 55.43 0.71 -24.55 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.89 21.28 26.80 -169.99 -4.56 16.72 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.49 -12.84 5.51 -98.92 -0.55 -13.39 16 8 C 0.01 0.34 5.97 -27.48 -0.16 0.17 16 9 C -0.11 -2.32 5.40 -26.63 -0.14 -2.46 16 10 C 0.17 3.37 2.35 -67.97 -0.16 3.21 16 11 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 12 N -0.70 -11.94 5.08 -58.76 -0.30 -12.24 16 13 C 0.64 11.39 8.71 54.06 0.47 11.86 16 14 O -0.58 -11.92 15.28 -19.28 -0.29 -12.21 16 15 O -0.37 -5.55 10.00 -40.32 -0.40 -5.95 16 16 C 0.10 1.27 3.19 -25.07 -0.08 1.19 16 17 C -0.14 -1.57 6.63 -24.74 -0.16 -1.73 16 18 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 19 C -0.12 -0.91 6.80 -25.61 -0.17 -1.08 16 20 C -0.12 -1.14 6.57 -25.61 -0.17 -1.31 16 21 C -0.12 -2.46 5.50 -26.61 -0.15 -2.61 16 22 C -0.01 -0.19 5.60 -27.47 -0.15 -0.34 16 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.40 5.75 8.71 -40.82 -0.36 5.40 16 29 H 0.09 1.27 7.20 -51.93 -0.37 0.89 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.62 5.17 -51.93 -0.27 0.35 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -29.42 323.69 -8.47 -37.89 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.81 Total: 1.13 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.70 Total: -5.67 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.41 Total: -36.79 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.70 Total: -18.16 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.56 Total: 16.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.42 -8.47 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193576747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.922 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds