Wall clock time and date at job start Mon Mar 30 2020 01:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00189 * 2 1 4 4 H 1.48498 * 109.47146 * 239.99984 * 3 2 1 5 5 H 1.48502 * 109.46753 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47152 * 119.99820 * 3 2 1 7 7 C 1.37877 * 120.00133 * 179.97438 * 2 1 3 8 8 C 1.51273 * 120.84673 * 0.02562 * 7 2 1 9 9 C 1.53230 * 108.53878 * 231.32066 * 8 7 2 10 10 C 1.52958 * 109.40205 * 305.37783 * 9 8 7 11 11 H 1.09003 * 109.41196 * 303.55288 * 10 9 8 12 12 N 1.46505 * 109.41044 * 183.70225 * 10 9 8 13 13 C 1.34777 * 120.00042 * 155.00004 * 12 10 9 14 14 O 1.21516 * 120.00008 * 359.97438 * 13 12 10 15 15 O 1.34638 * 120.00050 * 179.97438 * 13 12 10 16 16 C 1.45203 * 116.99865 * 179.97438 * 15 13 12 17 17 C 1.54892 * 110.59975 * 93.31702 * 16 15 13 18 18 C 1.54888 * 102.74611 * 156.67290 * 17 16 15 19 19 C 1.54265 * 104.19721 * 322.05788 * 18 17 16 20 20 C 1.53873 * 106.59997 * 23.61451 * 19 18 17 21 21 C 1.52961 * 109.82090 * 63.59622 * 10 9 8 22 22 C 1.51269 * 120.85502 * 179.97438 * 7 2 1 23 23 H 0.96997 * 120.00195 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.62712 * 111.60873 * 8 7 2 25 25 H 1.09002 * 109.62975 * 351.03897 * 8 7 2 26 26 H 1.08994 * 109.48606 * 185.39426 * 9 8 7 27 27 H 1.09007 * 109.47931 * 65.34965 * 9 8 7 28 28 H 0.97000 * 120.00281 * 334.98822 * 12 10 9 29 29 H 1.09002 * 110.43614 * 330.69919 * 16 15 13 30 30 H 1.08992 * 110.75663 * 274.99152 * 17 16 15 31 31 H 1.09000 * 110.75339 * 38.36176 * 17 16 15 32 32 H 1.09007 * 110.48520 * 203.37936 * 18 17 16 33 33 H 1.08996 * 110.48377 * 80.74349 * 18 17 16 34 34 H 1.08993 * 110.03585 * 264.31946 * 19 18 17 35 35 H 1.09005 * 110.02598 * 142.89513 * 19 18 17 36 36 H 1.09002 * 110.03017 * 240.71676 * 20 19 18 37 37 H 1.08996 * 110.07624 * 119.30418 * 20 19 18 38 38 H 1.08994 * 109.48455 * 56.37921 * 21 10 9 39 39 H 1.08996 * 109.48260 * 176.42308 * 21 10 9 40 40 H 1.08996 * 109.62519 * 248.39320 * 22 7 2 41 41 H 1.09001 * 109.62026 * 8.77318 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 1.2676 -2.5152 0.0005 9 6 1.8228 -3.3827 1.1351 10 6 3.3398 -3.5070 0.9839 11 1 3.5738 -3.9112 -0.0010 12 7 3.8597 -4.4076 2.0159 13 6 5.0173 -5.0676 1.8135 14 8 5.6294 -4.9161 0.7748 15 8 5.4953 -5.8949 2.7620 16 6 6.7469 -6.5730 2.4755 17 6 7.9447 -5.7650 3.0337 18 6 9.0414 -6.8468 3.1947 19 6 8.2747 -8.0931 3.6834 20 6 6.8158 -7.9190 3.2260 21 6 3.9906 -2.1310 1.1351 22 6 3.5171 -1.2166 0.0000 23 1 -0.4850 0.8400 0.0004 24 1 1.4199 -3.0193 -0.9538 25 1 0.2035 -2.3409 0.1600 26 1 1.3705 -4.3733 1.0900 27 1 1.5898 -2.9197 2.0940 28 1 3.3710 -4.5288 2.8450 29 1 6.8586 -6.7284 1.4024 30 1 8.2584 -4.9994 2.3243 31 1 7.6956 -5.3211 3.9976 32 1 9.7774 -6.5365 3.9365 33 1 9.5236 -7.0464 2.2378 34 1 8.3202 -8.1570 4.7705 35 1 8.7009 -8.9920 3.2379 36 1 6.1532 -7.8983 4.0913 37 1 6.5331 -8.7334 2.5590 38 1 3.7063 -1.6977 2.0940 39 1 5.0747 -2.2347 1.0900 40 1 3.8771 -1.6007 -0.9544 41 1 3.8982 -0.2073 0.1557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193576747.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:46 Heat of formation + Delta-G solvation = -133.375408 kcal Electronic energy + Delta-G solvation = -20727.827866 eV Core-core repulsion = 17605.340595 eV Total energy + Delta-G solvation = -3122.487271 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.65816 -39.54421 -38.31244 -36.63659 -35.49153 -33.42801 -31.51935 -29.74511 -29.54159 -28.53921 -24.52247 -23.37664 -22.59914 -21.56786 -21.34666 -21.19131 -19.81839 -18.02416 -17.88224 -17.10212 -16.66120 -16.42668 -16.37565 -15.52341 -15.10207 -14.61925 -14.47566 -14.28799 -14.06072 -13.95366 -13.59012 -13.45610 -13.09475 -12.80763 -12.65935 -12.55438 -12.16370 -12.08469 -12.06060 -11.91932 -11.78910 -11.68733 -11.59278 -11.40588 -11.24183 -10.92820 -10.74094 -10.55462 -10.04696 -8.18270 -6.12414 1.17005 1.39999 1.41653 1.49003 1.75760 2.40520 3.06575 3.23837 3.52963 3.58849 3.93966 3.97755 4.13328 4.25736 4.44275 4.44759 4.48289 4.51205 4.68338 4.69731 4.76659 4.84912 4.89215 4.93581 5.02417 5.04252 5.09593 5.17133 5.18682 5.19985 5.20273 5.42028 5.49213 5.52735 5.58215 5.64483 5.74891 5.81343 6.33201 6.47589 6.92866 7.34364 7.45927 8.92311 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.041271 B = 0.003848 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.283351 B = 7274.842202 C = 7713.652815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.029 3.971 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.503 4.503 8 C 0.010 3.990 9 C -0.101 4.101 10 C 0.183 3.817 11 H 0.063 0.937 12 N -0.692 5.692 13 C 0.643 3.357 14 O -0.608 6.608 15 O -0.363 6.363 16 C 0.088 3.912 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.118 4.118 21 C -0.109 4.109 22 C -0.010 4.010 23 H 0.264 0.736 24 H 0.001 0.999 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.415 0.585 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.017 0.983 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.065 -14.418 9.697 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.522 4.522 8 C -0.028 4.028 9 C -0.139 4.139 10 C 0.080 3.920 11 H 0.081 0.919 12 N -0.350 5.350 13 C 0.396 3.604 14 O -0.500 6.500 15 O -0.277 6.277 16 C 0.032 3.968 17 C -0.181 4.181 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.148 4.148 22 C -0.048 4.048 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.252 0.748 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.258 -14.300 9.220 22.199 hybrid contribution -0.208 1.214 -0.104 1.236 sum 14.051 -13.086 9.116 21.255 Atomic orbital electron populations 1.69929 1.07431 1.27648 1.51558 1.25518 0.95338 1.01481 0.94708 0.85858 0.78427 0.79716 0.79389 1.19608 1.21818 1.18997 1.20584 0.90726 0.92140 1.48754 1.19299 0.97442 0.93153 0.92928 1.21738 0.91996 0.99330 1.00867 1.20736 0.93971 0.87928 0.89378 0.91903 1.44972 1.21571 1.45702 1.22786 1.18333 0.81922 0.78383 0.81747 1.90945 1.60843 1.69104 1.29058 1.86303 1.41521 1.55920 1.43969 1.23921 0.79267 0.92827 1.00772 1.22924 0.95074 0.98685 1.01436 1.22284 0.96795 0.94030 1.02435 1.22098 0.92553 0.98511 1.02124 1.22263 0.99232 0.93219 1.00829 1.21838 0.97573 0.95337 1.00041 1.19603 0.95133 0.95362 0.94738 0.92630 0.98109 0.94412 0.91899 0.92082 0.74795 0.90693 0.92494 0.90329 0.89479 0.90948 0.89951 0.89713 0.89934 0.90013 0.92366 0.94073 0.96476 0.95322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.43 12.73 21.45 0.27 -53.16 16 2 C 0.03 1.55 5.46 84.66 0.46 2.01 16 3 Si 0.94 43.44 26.80 68.60 1.84 45.28 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.50 -26.28 5.51 -16.17 -0.09 -26.37 16 8 C 0.01 0.48 5.97 30.11 0.18 0.66 16 9 C -0.10 -3.96 5.40 30.66 0.17 -3.80 16 10 C 0.18 7.03 2.35 44.96 0.11 7.13 16 11 H 0.06 2.69 7.58 -2.39 -0.02 2.67 16 12 N -0.69 -22.34 5.08 -570.23 -2.90 -25.23 16 13 C 0.64 22.15 8.71 129.79 1.13 23.28 16 14 O -0.61 -25.03 15.28 19.79 0.30 -24.73 16 15 O -0.36 -10.39 10.00 -55.47 -0.55 -10.95 16 16 C 0.09 2.08 3.19 31.67 0.10 2.18 16 17 C -0.14 -2.99 6.63 31.89 0.21 -2.78 16 18 C -0.12 -1.65 6.83 31.67 0.22 -1.44 16 19 C -0.12 -1.36 6.80 31.32 0.21 -1.14 16 20 C -0.12 -1.91 6.57 31.32 0.21 -1.71 16 21 C -0.11 -4.49 5.50 30.67 0.17 -4.32 16 22 C -0.01 -0.48 5.60 30.12 0.17 -0.31 16 23 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.04 2.02 7.07 -2.39 -0.02 2.00 16 26 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 28 H 0.42 10.94 8.71 -92.71 -0.81 10.13 16 29 H 0.07 2.05 7.20 -2.39 -0.02 2.03 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.08 1.31 8.07 -2.39 -0.02 1.29 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.03 1.31 5.17 -2.39 -0.01 1.29 16 Total: -1.00 -63.06 323.69 2.41 -60.65 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.21 Total: 14.73 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 3.24 Total: -6.59 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.62 Total: -78.39 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.25 Total: -35.67 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.84 Total: 45.28 kcal Total: -63.06 2.41 -60.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193576747.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.726 kcal (2) G-P(sol) polarization free energy of solvation -63.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds