Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48503 * 109.46757 * 274.12326 * 3 2 1 5 5 H 1.48506 * 109.46807 * 34.11971 * 3 2 1 6 6 H 1.48498 * 109.47256 * 154.11990 * 3 2 1 7 7 C 1.37878 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00340 * 4.32607 * 7 2 1 9 9 C 1.50701 * 119.99768 * 184.32405 * 7 2 1 10 10 N 1.46502 * 110.01535 * 64.04577 * 9 7 2 11 11 C 1.34772 * 120.00134 * 55.94176 * 10 9 7 12 12 O 1.21513 * 120.00010 * 5.32380 * 11 10 9 13 13 O 1.34635 * 119.99716 * 185.32931 * 11 10 9 14 14 C 1.45201 * 116.99870 * 185.19889 * 13 11 10 15 15 C 1.55239 * 110.46899 * 260.45447 * 14 13 11 16 16 C 1.54883 * 102.59037 * 203.39257 * 15 14 13 17 17 C 1.54260 * 104.31419 * 37.93171 * 16 15 14 18 18 C 1.53874 * 106.60047 * 336.32525 * 17 16 15 19 19 C 1.54273 * 110.03176 * 185.43403 * 9 7 2 20 20 C 1.54965 * 104.15834 * 95.75510 * 19 9 7 21 21 C 1.54888 * 102.77620 * 37.88775 * 20 19 9 22 22 C 1.53870 * 110.03407 * 302.65207 * 9 7 2 23 23 H 0.96999 * 119.99919 * 0.02562 * 1 2 3 24 24 H 0.97007 * 119.99659 * 235.93609 * 10 9 7 25 25 H 1.08997 * 110.43977 * 23.10450 * 14 13 11 26 26 H 1.09008 * 110.89756 * 85.10071 * 15 14 13 27 27 H 1.09000 * 110.76483 * 321.62683 * 15 14 13 28 28 H 1.09001 * 110.48921 * 279.18844 * 16 15 14 29 29 H 1.09005 * 110.49116 * 156.67620 * 16 15 14 30 30 H 1.09005 * 110.03737 * 95.60671 * 17 16 15 31 31 H 1.09003 * 110.03956 * 216.98987 * 17 16 15 32 32 H 1.09004 * 110.03740 * 119.27808 * 18 17 16 33 33 H 1.08998 * 110.03306 * 240.66588 * 18 17 16 34 34 H 1.08995 * 110.48510 * 214.40171 * 19 9 7 35 35 H 1.08997 * 110.48118 * 337.04845 * 19 9 7 36 36 H 1.08997 * 110.72126 * 279.57686 * 20 19 9 37 37 H 1.08998 * 110.92545 * 156.29714 * 20 19 9 38 38 H 1.09007 * 110.48759 * 203.40092 * 21 20 19 39 39 H 1.08998 * 110.48824 * 80.76410 * 21 20 19 40 40 H 1.08999 * 110.03332 * 359.95165 * 22 9 7 41 41 H 1.09002 * 110.03622 * 121.38342 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4094 2.0967 -1.3965 5 1 1.4928 2.6260 0.7854 6 1 3.5876 1.4167 0.6111 7 6 2.0045 -1.1941 0.0005 8 1 1.4669 -2.1281 -0.0696 9 6 3.5083 -1.1958 0.0989 10 7 3.9271 -0.6405 1.3883 11 6 3.4671 -1.1785 2.5351 12 8 2.7834 -2.1826 2.5038 13 8 3.7651 -0.6035 3.7155 14 6 3.3351 -1.2996 4.9150 15 6 2.0262 -0.6732 5.4665 16 6 2.0623 -1.0770 6.9614 17 6 3.5498 -0.9586 7.3525 18 6 4.3591 -1.1001 6.0515 19 6 4.0464 -2.6332 -0.0572 20 6 4.4165 -2.7384 -1.5583 21 6 4.9982 -1.3364 -1.8668 22 6 4.1128 -0.3717 -1.0513 23 1 -0.4850 0.8400 -0.0004 24 1 4.5356 0.1145 1.4166 25 1 3.1951 -2.3609 4.7097 26 1 1.1529 -1.0992 4.9723 27 1 2.0415 0.4114 5.3589 28 1 1.7151 -2.1024 7.0881 29 1 1.4559 -0.3937 7.5560 30 1 3.7403 0.0138 7.8068 31 1 3.8176 -1.7540 8.0480 32 1 4.9422 -0.1963 5.8742 33 1 5.0204 -1.9642 6.1152 34 1 4.9297 -2.7794 0.5645 35 1 3.2746 -3.3592 0.1981 36 1 3.5293 -2.9298 -2.1617 37 1 5.1667 -3.5122 -1.7210 38 1 4.9209 -1.1172 -2.9318 39 1 6.0353 -1.2728 -1.5377 40 1 3.3185 0.0289 -1.6812 41 1 4.7178 0.4415 -0.6503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193595406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -88.037216 kcal Electronic energy + Delta-G solvation = -21760.733633 eV Core-core repulsion = 18640.212374 eV Total energy + Delta-G solvation = -3120.521260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.74911 -38.26961 -36.87404 -34.73177 -32.95071 -32.10667 -28.64985 -28.30485 -28.05948 -27.24141 -23.92057 -21.53237 -20.44978 -20.29802 -19.88210 -18.91236 -17.86327 -16.80606 -15.81236 -15.45030 -15.26216 -14.77097 -14.72337 -14.09093 -13.94611 -13.30045 -13.00655 -12.55820 -12.40720 -12.23669 -12.01632 -11.74829 -11.22954 -11.17808 -11.06240 -11.01338 -10.89812 -10.52350 -10.48604 -10.36649 -10.26530 -9.88674 -9.87254 -9.76273 -9.57760 -9.35416 -9.13279 -8.59190 -7.75836 -6.10973 -4.10194 3.06171 3.25293 3.30587 3.37397 3.98978 4.37145 4.66188 4.70765 4.84129 5.05288 5.31603 5.46414 5.47505 5.53565 5.55812 5.58215 5.60026 5.67425 5.78117 5.90502 5.98463 6.08320 6.18948 6.23895 6.26774 6.36413 6.38534 6.40864 6.43788 6.49278 6.57015 6.69966 6.80446 7.03797 7.20428 7.27743 7.69048 7.77695 8.35657 8.73096 9.01118 9.50604 9.55548 11.00899 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.006828 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.983912 B = 4099.495279 C = 4710.546595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.255 1.255 7 C -0.488 4.488 8 H 0.081 0.919 9 C 0.274 3.726 10 N -0.701 5.701 11 C 0.641 3.359 12 O -0.553 6.553 13 O -0.382 6.382 14 C 0.103 3.897 15 C -0.139 4.139 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.124 4.124 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.135 4.135 23 H 0.263 0.737 24 H 0.380 0.620 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -0.219 7.824 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.180 1.180 7 C -0.527 4.527 8 H 0.099 0.901 9 C 0.194 3.806 10 N -0.360 5.360 11 C 0.393 3.607 12 O -0.440 6.440 13 O -0.297 6.297 14 C 0.047 3.953 15 C -0.177 4.177 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.162 4.162 19 C -0.145 4.145 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.173 4.173 23 H 0.073 0.927 24 H 0.214 0.786 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.406 -0.619 7.855 12.270 hybrid contribution 0.452 1.420 0.087 1.493 sum 9.857 0.801 7.942 12.684 Atomic orbital electron populations 1.69938 1.06384 1.26894 1.49042 1.25085 0.94666 0.99187 0.93970 0.87122 0.80652 0.83609 0.77559 1.21005 1.22558 1.17979 1.21121 0.87989 0.94725 1.48853 0.90140 1.19077 0.95158 0.89189 0.77223 1.46697 1.49407 1.36067 1.03872 1.18262 0.79519 0.82311 0.80641 1.90908 1.40951 1.26083 1.86076 1.86283 1.76475 1.52492 1.14486 1.23422 0.93438 0.97376 0.81080 1.22919 0.97977 1.01647 0.95140 1.22270 0.96201 1.01683 0.95891 1.22066 0.95181 1.01809 0.96683 1.22239 0.97837 1.02814 0.93313 1.22555 0.99340 0.98410 0.94240 1.22424 0.99904 0.95728 0.97652 1.22267 0.98148 0.95952 0.99077 1.22784 0.98755 0.97729 0.98043 0.92715 0.78568 0.89121 0.90399 0.90700 0.91346 0.91369 0.91598 0.91644 0.90565 0.91241 0.93687 0.90981 0.91164 0.92942 0.92382 0.92632 0.90263 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 2 C 0.07 2.13 5.36 -17.82 -0.10 2.03 16 3 Si 0.88 21.33 23.88 -169.99 -4.06 17.27 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.25 -5.53 3.92 56.52 0.22 -5.31 16 7 C -0.49 -13.62 7.18 -34.44 -0.25 -13.86 16 8 H 0.08 2.54 7.74 -52.49 -0.41 2.13 16 9 C 0.27 6.26 0.47 -131.85 -0.06 6.20 16 10 N -0.70 -15.50 3.48 -52.50 -0.18 -15.68 16 11 C 0.64 14.92 8.18 54.05 0.44 15.36 16 12 O -0.55 -14.51 13.83 -19.28 -0.27 -14.78 16 13 O -0.38 -7.74 10.00 -40.31 -0.40 -8.14 16 14 C 0.10 1.75 3.27 -24.88 -0.08 1.67 16 15 C -0.14 -2.21 6.66 -24.55 -0.16 -2.38 16 16 C -0.12 -1.46 6.82 -25.08 -0.17 -1.64 16 17 C -0.12 -1.28 6.80 -25.62 -0.17 -1.45 16 18 C -0.12 -1.59 6.57 -25.61 -0.17 -1.76 16 19 C -0.11 -2.23 5.02 -25.03 -0.13 -2.36 16 20 C -0.12 -2.09 6.91 -24.70 -0.17 -2.26 16 21 C -0.12 -1.94 6.83 -25.07 -0.17 -2.11 16 22 C -0.13 -2.70 4.13 -25.62 -0.11 -2.81 16 23 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 24 H 0.38 7.54 6.76 -40.82 -0.28 7.26 16 25 H 0.09 1.65 7.09 -51.93 -0.37 1.28 16 26 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.89 8.05 -51.93 -0.42 0.47 16 35 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.73 5.75 -51.93 -0.30 1.43 16 41 H 0.05 0.95 6.20 -51.93 -0.32 0.63 16 LS Contribution 312.53 15.07 4.71 4.71 Total: -1.00 -31.93 312.53 -7.59 -39.52 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.86 Total: 8.86 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.29 Total: -5.36 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.59 Total: -42.09 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.67 Total: -22.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.06 Total: 17.27 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.93 -7.59 -39.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193595406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.517 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds