Wall clock time and date at job start Mon Mar 30 2020 01:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48503 * 109.46757 * 274.12326 * 3 2 1 5 5 H 1.48506 * 109.46807 * 34.11971 * 3 2 1 6 6 H 1.48498 * 109.47256 * 154.11990 * 3 2 1 7 7 C 1.37878 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00340 * 4.32607 * 7 2 1 9 9 C 1.50701 * 119.99768 * 184.32405 * 7 2 1 10 10 N 1.46502 * 110.01535 * 64.04577 * 9 7 2 11 11 C 1.34772 * 120.00134 * 55.94176 * 10 9 7 12 12 O 1.21513 * 120.00010 * 5.32380 * 11 10 9 13 13 O 1.34635 * 119.99716 * 185.32931 * 11 10 9 14 14 C 1.45201 * 116.99870 * 185.19889 * 13 11 10 15 15 C 1.55239 * 110.46899 * 260.45447 * 14 13 11 16 16 C 1.54883 * 102.59037 * 203.39257 * 15 14 13 17 17 C 1.54260 * 104.31419 * 37.93171 * 16 15 14 18 18 C 1.53874 * 106.60047 * 336.32525 * 17 16 15 19 19 C 1.54273 * 110.03176 * 185.43403 * 9 7 2 20 20 C 1.54965 * 104.15834 * 95.75510 * 19 9 7 21 21 C 1.54888 * 102.77620 * 37.88775 * 20 19 9 22 22 C 1.53870 * 110.03407 * 302.65207 * 9 7 2 23 23 H 0.96999 * 119.99919 * 0.02562 * 1 2 3 24 24 H 0.97007 * 119.99659 * 235.93609 * 10 9 7 25 25 H 1.08997 * 110.43977 * 23.10450 * 14 13 11 26 26 H 1.09008 * 110.89756 * 85.10071 * 15 14 13 27 27 H 1.09000 * 110.76483 * 321.62683 * 15 14 13 28 28 H 1.09001 * 110.48921 * 279.18844 * 16 15 14 29 29 H 1.09005 * 110.49116 * 156.67620 * 16 15 14 30 30 H 1.09005 * 110.03737 * 95.60671 * 17 16 15 31 31 H 1.09003 * 110.03956 * 216.98987 * 17 16 15 32 32 H 1.09004 * 110.03740 * 119.27808 * 18 17 16 33 33 H 1.08998 * 110.03306 * 240.66588 * 18 17 16 34 34 H 1.08995 * 110.48510 * 214.40171 * 19 9 7 35 35 H 1.08997 * 110.48118 * 337.04845 * 19 9 7 36 36 H 1.08997 * 110.72126 * 279.57686 * 20 19 9 37 37 H 1.08998 * 110.92545 * 156.29714 * 20 19 9 38 38 H 1.09007 * 110.48759 * 203.40092 * 21 20 19 39 39 H 1.08998 * 110.48824 * 80.76410 * 21 20 19 40 40 H 1.08999 * 110.03332 * 359.95165 * 22 9 7 41 41 H 1.09002 * 110.03622 * 121.38342 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4094 2.0967 -1.3965 5 1 1.4928 2.6260 0.7854 6 1 3.5876 1.4167 0.6111 7 6 2.0045 -1.1941 0.0005 8 1 1.4669 -2.1281 -0.0696 9 6 3.5083 -1.1958 0.0989 10 7 3.9271 -0.6405 1.3883 11 6 3.4671 -1.1785 2.5351 12 8 2.7834 -2.1826 2.5038 13 8 3.7651 -0.6035 3.7155 14 6 3.3351 -1.2996 4.9150 15 6 2.0262 -0.6732 5.4665 16 6 2.0623 -1.0770 6.9614 17 6 3.5498 -0.9586 7.3525 18 6 4.3591 -1.1001 6.0515 19 6 4.0464 -2.6332 -0.0572 20 6 4.4165 -2.7384 -1.5583 21 6 4.9982 -1.3364 -1.8668 22 6 4.1128 -0.3717 -1.0513 23 1 -0.4850 0.8400 -0.0004 24 1 4.5356 0.1145 1.4166 25 1 3.1951 -2.3609 4.7097 26 1 1.1529 -1.0992 4.9723 27 1 2.0415 0.4114 5.3589 28 1 1.7151 -2.1024 7.0881 29 1 1.4559 -0.3937 7.5560 30 1 3.7403 0.0138 7.8068 31 1 3.8176 -1.7540 8.0480 32 1 4.9422 -0.1963 5.8742 33 1 5.0204 -1.9642 6.1152 34 1 4.9297 -2.7794 0.5645 35 1 3.2746 -3.3592 0.1981 36 1 3.5293 -2.9298 -2.1617 37 1 5.1667 -3.5122 -1.7210 38 1 4.9209 -1.1172 -2.9318 39 1 6.0353 -1.2728 -1.5377 40 1 3.3185 0.0289 -1.6812 41 1 4.7178 0.4415 -0.6503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193595406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:37 Heat of formation + Delta-G solvation = -109.726178 kcal Electronic energy + Delta-G solvation = -21761.674137 eV Core-core repulsion = 18640.212374 eV Total energy + Delta-G solvation = -3121.461764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48665 -39.81087 -38.29856 -36.38618 -34.78799 -34.20465 -29.95455 -29.74058 -29.61932 -28.68130 -25.87943 -23.16562 -21.86152 -21.56161 -21.13381 -20.76239 -19.56799 -18.83080 -17.42532 -17.03159 -16.68279 -16.57265 -16.29690 -15.65962 -15.40615 -14.92142 -14.42969 -14.15002 -13.98123 -13.87910 -13.45617 -13.21038 -12.90950 -12.84724 -12.65487 -12.25643 -12.17246 -12.11010 -11.88904 -11.74275 -11.54617 -11.48008 -11.39009 -11.36547 -11.26498 -11.14463 -11.09079 -10.75962 -9.64803 -8.31957 -6.37264 1.23625 1.30005 1.41341 1.53134 2.13471 2.31390 3.01110 3.51285 3.57407 3.61560 3.90488 3.95681 3.98182 4.17290 4.29300 4.43386 4.49060 4.51932 4.63123 4.70003 4.74730 4.81725 4.85015 4.92441 4.95437 5.00453 5.01865 5.06483 5.15262 5.19314 5.20897 5.28466 5.40549 5.49367 5.59553 5.62502 5.69687 5.96546 6.24410 6.69295 6.85527 7.28918 7.74535 8.84689 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.021064 B = 0.006828 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.983912 B = 4099.495279 C = 4710.546595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.263 1.263 5 H -0.313 1.313 6 H -0.214 1.214 7 C -0.490 4.490 8 H 0.017 0.983 9 C 0.270 3.730 10 N -0.693 5.693 11 C 0.637 3.363 12 O -0.594 6.594 13 O -0.377 6.377 14 C 0.088 3.912 15 C -0.145 4.145 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.137 4.137 23 H 0.262 0.738 24 H 0.397 0.603 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.029 0.971 36 H 0.052 0.948 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.957 1.404 8.677 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.242 1.242 6 H -0.137 1.137 7 C -0.529 4.529 8 H 0.035 0.965 9 C 0.189 3.811 10 N -0.354 5.354 11 C 0.390 3.610 12 O -0.484 6.484 13 O -0.292 6.292 14 C 0.032 3.968 15 C -0.183 4.183 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.143 4.143 22 C -0.175 4.175 23 H 0.071 0.929 24 H 0.234 0.766 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.456 1.003 8.715 16.063 hybrid contribution -0.891 0.761 -0.104 1.177 sum 12.564 1.764 8.611 15.334 Atomic orbital electron populations 1.70126 1.08751 1.27832 1.51854 1.26045 0.95407 1.03625 0.93551 0.86102 0.80688 0.77499 0.78668 1.18882 1.24156 1.13718 1.21233 0.91031 0.92258 1.48357 0.96472 1.19093 0.92127 0.91543 0.78371 1.46334 1.49342 1.36400 1.03364 1.18444 0.78953 0.81937 0.81700 1.90897 1.42651 1.27997 1.86845 1.86273 1.76206 1.52405 1.14337 1.23875 0.95835 0.96104 0.80997 1.22945 0.96154 1.01069 0.98140 1.22270 0.98065 1.02297 0.92655 1.22085 0.93136 1.03875 0.95808 1.22267 0.97052 1.03791 0.92157 1.22472 0.98413 0.96158 0.97393 1.22412 1.00335 0.98198 0.94290 1.22274 0.98832 0.93200 0.99978 1.22732 0.99117 0.98917 0.96745 0.92903 0.76568 0.91212 0.93930 0.91020 0.91002 0.89491 0.89755 0.89213 0.89941 0.89744 0.92239 0.95209 0.92941 0.89506 0.90060 0.89318 0.92152 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 2 C 0.01 0.68 5.36 84.65 0.45 1.13 16 3 Si 0.95 43.92 23.88 68.60 1.64 45.55 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 6 H -0.21 -8.34 3.92 99.48 0.39 -7.95 16 7 C -0.49 -28.82 7.18 25.60 0.18 -28.63 16 8 H 0.02 1.18 7.74 -2.91 -0.02 1.16 16 9 C 0.27 12.28 0.47 3.58 0.00 12.28 16 10 N -0.69 -29.86 3.48 -550.42 -1.92 -31.78 16 11 C 0.64 30.08 8.18 129.79 1.06 31.14 16 12 O -0.59 -32.89 13.83 19.80 0.27 -32.62 16 13 O -0.38 -15.17 10.00 -55.44 -0.55 -15.73 16 14 C 0.09 2.98 3.27 31.79 0.10 3.08 16 15 C -0.15 -4.71 6.66 32.01 0.21 -4.49 16 16 C -0.12 -2.55 6.82 31.66 0.22 -2.34 16 17 C -0.11 -1.99 6.80 31.32 0.21 -1.78 16 18 C -0.12 -2.66 6.57 31.32 0.21 -2.45 16 19 C -0.11 -4.43 5.02 31.70 0.16 -4.27 16 20 C -0.11 -3.79 6.91 31.91 0.22 -3.57 16 21 C -0.11 -3.03 6.83 31.67 0.22 -2.81 16 22 C -0.14 -5.06 4.13 31.32 0.13 -4.93 16 23 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 24 H 0.40 14.40 6.76 -92.70 -0.63 13.77 16 25 H 0.07 2.65 7.09 -2.39 -0.02 2.63 16 26 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.83 8.07 -2.38 -0.02 1.81 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 2.29 8.05 -2.39 -0.02 2.27 16 35 H 0.03 1.46 7.50 -2.39 -0.02 1.44 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.09 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.06 2.49 5.75 -2.39 -0.01 2.47 16 41 H 0.08 2.50 6.20 -2.39 -0.01 2.48 16 Total: -1.00 -77.26 312.53 3.19 -74.07 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.07 Total: 29.47 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 3.38 Total: -7.64 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -1.62 Total: -93.11 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.28 Total: -48.35 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.64 Total: 45.55 kcal Total: -77.26 3.19 -74.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193595406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.652 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds