Wall clock time and date at job start Mon Mar 30 2020 00:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47076 * 2 1 4 4 C 1.53001 * 109.47076 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47314 * 180.02562 * 4 3 2 6 6 C 1.46892 * 110.99946 * 66.04338 * 5 4 3 7 7 C 1.50701 * 109.47062 * 193.95634 * 6 5 4 8 8 H 1.07991 * 120.00480 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00019 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00093 * 180.02562 * 9 7 6 11 11 Si 1.86807 * 119.99951 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47206 * 90.00031 * 11 9 7 13 13 H 1.48494 * 109.46867 * 210.00053 * 11 9 7 14 14 H 1.48495 * 109.47149 * 330.00035 * 11 9 7 15 15 C 1.46892 * 111.00196 * 190.00043 * 5 4 3 16 16 C 1.50698 * 109.47360 * 169.99762 * 15 5 4 17 17 C 1.33386 * 125.20233 * 89.99689 * 16 15 5 18 18 C 1.38432 * 114.92087 * 179.97438 * 17 16 15 19 19 C 1.33386 * 114.91918 * 0.02562 * 18 17 16 20 20 C 1.50703 * 125.20043 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59433 * 0.24350 * 19 18 17 22 22 H 1.09006 * 109.47250 * 60.00011 * 1 2 3 23 23 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47240 * 300.00025 * 1 2 3 25 25 H 1.09000 * 109.47240 * 239.99975 * 2 1 3 26 26 H 1.08995 * 109.47238 * 120.00487 * 2 1 3 27 27 H 1.09000 * 109.47106 * 59.99893 * 3 2 1 28 28 H 1.09005 * 109.47557 * 300.00304 * 3 2 1 29 29 H 1.09003 * 109.47060 * 60.00469 * 4 3 2 30 30 H 1.08996 * 109.47312 * 299.99938 * 4 3 2 31 31 H 1.09001 * 109.47354 * 313.95692 * 6 5 4 32 32 H 1.08999 * 109.47110 * 73.95735 * 6 5 4 33 33 H 0.97006 * 120.00021 * 180.02562 * 10 9 7 34 34 H 1.09010 * 109.47283 * 49.99810 * 15 5 4 35 35 H 1.09002 * 109.47277 * 290.00102 * 15 5 4 36 36 H 1.08001 * 122.54102 * 359.97438 * 17 16 15 37 37 H 1.07997 * 122.53785 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.47152 * 90.00037 * 20 19 18 39 39 H 1.09001 * 109.46980 * 330.00137 * 20 19 18 40 40 H 1.09004 * 109.47113 * 210.00118 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7108 3.5086 1.2537 7 6 3.9142 4.9931 1.0924 8 1 4.2670 5.3908 0.1524 9 6 3.6499 5.8436 2.1450 10 7 3.8270 7.1391 2.0040 11 14 3.0389 5.1559 3.7708 12 1 4.1993 4.8397 4.6419 13 1 2.1765 6.1619 4.4409 14 1 2.2553 3.9193 3.5220 15 6 5.5084 2.8737 -0.2387 16 6 5.9332 4.3001 -0.4755 17 6 6.3220 5.1540 0.4726 18 6 6.6676 6.4145 0.0163 19 6 6.5588 6.5842 -1.3023 20 6 6.8730 7.8584 -2.0430 21 16 5.9852 5.0957 -2.0432 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9288 -0.8909 30 1 3.9337 0.9285 0.8891 31 1 2.6672 3.3093 1.4973 32 1 4.3482 3.1398 2.0573 33 1 3.6414 7.7374 2.7447 34 1 5.7517 2.2720 -1.1146 35 1 6.0328 2.4780 0.6310 36 1 6.3641 4.8826 1.5171 37 1 7.0000 7.2008 0.6778 38 1 7.9213 7.8560 -2.3417 39 1 6.6822 8.7127 -1.3934 40 1 6.2427 7.9282 -2.9296 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204035138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:47 Heat of formation + Delta-G solvation = 33.952167 kcal Electronic energy + Delta-G solvation = -18746.403974 eV Core-core repulsion = 16073.925442 eV Total energy + Delta-G solvation = -2672.478532 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.09918 -36.51873 -34.36970 -32.36042 -31.42109 -28.94000 -28.33069 -26.18500 -23.29264 -22.61901 -21.81491 -20.86187 -19.78697 -17.86967 -16.93993 -15.91751 -15.28372 -14.66328 -14.44075 -14.36819 -13.71930 -13.37300 -13.22489 -12.96809 -12.66745 -12.48692 -12.42180 -12.01173 -11.72478 -11.69178 -11.21913 -11.17378 -10.98123 -10.79453 -10.72698 -10.56370 -10.40709 -10.27498 -9.93129 -9.77039 -9.72207 -9.03247 -8.49934 -7.41309 -7.37556 -7.13126 -5.93726 -3.83339 2.01622 2.62869 3.01863 3.27989 3.37427 3.39971 3.92005 4.47435 4.79475 5.16591 5.28839 5.34278 5.37829 5.61573 5.65286 5.80795 5.82198 5.86053 5.94128 5.94768 6.00009 6.05699 6.09063 6.16378 6.19462 6.31131 6.33883 6.57512 6.64506 6.71981 6.78284 6.87464 6.94614 7.26879 7.41642 7.64688 7.69564 7.95016 8.06211 8.74717 9.21491 9.65632 11.15543 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.007616 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.849003 B = 3675.398837 C = 5042.826818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.158 3.842 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.071 3.929 10 N -0.889 5.889 11 Si 0.858 3.142 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.270 1.270 15 C 0.144 3.856 16 C -0.171 4.171 17 C -0.047 4.047 18 C -0.104 4.104 19 C -0.197 4.197 20 C -0.071 4.071 21 S 0.050 5.950 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.030 0.970 32 H -0.021 1.021 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -7.822 -5.272 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.072 4.072 5 N -0.250 5.250 6 C 0.032 3.968 7 C -0.537 4.537 8 H 0.123 0.877 9 C -0.131 4.131 10 N -0.528 5.528 11 Si 0.686 3.314 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.195 1.195 15 C 0.015 3.985 16 C -0.288 4.288 17 C -0.077 4.077 18 C -0.135 4.135 19 C -0.313 4.313 20 C -0.130 4.130 21 S 0.312 5.688 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.048 0.952 32 H -0.003 1.003 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.138 -7.848 -7.023 10.747 hybrid contribution 0.005 -0.160 3.375 3.379 sum 2.143 -8.008 -3.648 9.057 Atomic orbital electron populations 1.21757 0.96138 1.00932 1.01978 1.21494 0.95657 0.97473 1.01365 1.21629 0.95090 0.95517 1.03235 1.22052 0.95465 0.90507 0.99212 1.62047 1.11796 1.12772 1.38360 1.20310 0.95556 0.95926 0.85046 1.21649 1.42186 0.88385 1.01524 0.87678 1.24828 0.95799 0.94755 0.97690 1.69891 1.49386 1.02037 1.31529 0.87128 0.79401 0.79204 0.85659 1.20714 1.21451 1.19505 1.20197 0.88623 0.90862 0.98861 1.23488 1.10606 1.00237 0.94497 1.19624 0.96796 0.92059 0.99208 1.19844 1.02359 0.97705 0.93638 1.24062 1.10651 0.99045 0.97577 1.20173 1.00464 0.93168 0.99180 1.83536 1.68423 1.05422 1.11459 0.92699 0.93269 0.92810 0.92370 0.92570 0.91552 0.91199 0.92016 0.96161 0.95225 1.00307 0.93097 0.91929 0.94528 0.85489 0.85772 0.92118 0.91163 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.54 5.93 -26.73 -0.16 -1.70 16 3 C -0.12 -1.87 5.17 -26.73 -0.14 -2.01 16 4 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 5 N -0.53 -10.85 4.56 -237.52 -1.08 -11.94 16 6 C 0.16 3.73 3.65 -4.98 -0.02 3.71 16 7 C -0.50 -13.33 6.13 -34.44 -0.21 -13.55 16 8 H 0.11 3.00 4.83 -52.49 -0.25 2.75 16 9 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 10 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 11 Si 0.86 21.09 27.47 -169.99 -4.67 16.43 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 15 C 0.14 2.76 5.45 -4.98 -0.03 2.74 16 16 C -0.17 -3.55 4.06 -36.00 -0.15 -3.70 16 17 C -0.05 -1.02 6.47 -41.21 -0.27 -1.29 16 18 C -0.10 -2.20 9.87 -41.21 -0.41 -2.61 16 19 C -0.20 -3.81 6.51 -36.00 -0.23 -4.04 16 20 C -0.07 -1.11 10.38 36.01 0.37 -0.73 16 21 S 0.05 0.95 23.15 -107.50 -2.49 -1.54 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.19 6.31 -51.93 -0.33 0.86 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 30 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.03 0.73 5.04 -51.93 -0.26 0.46 16 32 H -0.02 -0.50 7.41 -51.93 -0.38 -0.88 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.06 1.06 7.93 -51.92 -0.41 0.65 16 35 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 36 H 0.13 2.92 7.69 -52.49 -0.40 2.52 16 37 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -28.70 326.77 -10.21 -38.91 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.69 Total: -0.03 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -0.98 Total: -21.78 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: -0.31 Total: -36.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.70 -10.21 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204035138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.864 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds