Wall clock time and date at job start Mon Mar 30 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46592 * 2 1 4 4 H 1.08990 * 109.47077 * 304.99719 * 3 2 1 5 5 C 1.50706 * 109.46506 * 185.00150 * 3 2 1 6 6 H 1.08000 * 119.99360 * 239.99648 * 5 3 2 7 7 C 1.37874 * 120.00245 * 60.00041 * 5 3 2 8 8 N 1.31508 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99843 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47168 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47012 * 209.99746 * 9 7 5 12 12 H 1.48495 * 109.47537 * 330.00009 * 9 7 5 13 13 N 1.46493 * 109.47286 * 65.00428 * 3 2 1 14 14 C 1.34788 * 119.99654 * 274.99810 * 13 3 2 15 15 O 1.21581 * 119.99882 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99793 * 180.02562 * 14 13 3 17 17 C 1.39884 * 119.99521 * 179.97438 * 16 14 13 18 18 N 1.33630 * 125.60062 * 180.02562 * 17 16 14 19 19 C 1.30860 * 109.77815 * 180.02562 * 18 17 16 20 20 C 1.50706 * 125.89977 * 179.97438 * 19 18 17 21 21 N 1.34363 * 108.20135 * 359.97438 * 19 18 17 22 22 C 1.46506 * 126.76518 * 179.97438 * 21 19 18 23 23 N 1.31161 * 125.60618 * 0.35646 * 17 16 14 24 24 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47083 * 300.00360 * 1 2 3 26 26 H 1.09002 * 109.46889 * 59.99866 * 1 2 3 27 27 H 1.08994 * 109.47294 * 240.00151 * 2 1 3 28 28 H 1.08997 * 109.47204 * 119.99815 * 2 1 3 29 29 H 0.97000 * 120.00280 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00676 * 94.99483 * 13 3 2 31 31 H 0.96996 * 120.00001 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.46759 * 270.00332 * 20 19 18 33 33 H 1.09003 * 109.47207 * 29.99907 * 20 19 18 34 34 H 1.08992 * 109.46956 * 149.99998 * 20 19 18 35 35 H 1.08999 * 109.46892 * 90.00522 * 22 21 19 36 36 H 1.09000 * 109.46803 * 209.99696 * 22 21 19 37 37 H 1.09000 * 109.47214 * 330.00489 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4063 0.3367 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5549 -0.3500 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0739 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3413 2.6326 0.4318 16 7 0.0787 3.2674 2.5184 17 6 -1.1846 3.8561 2.6377 18 7 -1.6522 4.4813 3.7222 19 6 -2.8666 4.9129 3.4954 20 6 -3.7334 5.6661 4.4714 21 7 -3.2071 4.5687 2.2420 22 6 -4.4782 4.8500 1.5701 23 7 -2.1070 3.8800 1.7055 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0611 -2.9498 30 1 2.2719 2.1232 1.9978 31 1 0.6982 3.2931 3.2643 32 1 -4.3233 4.9587 5.0543 33 1 -3.1030 6.2516 5.1405 34 1 -4.4009 6.3325 3.9252 35 1 -4.4129 5.8088 1.0558 36 1 -4.6882 4.0629 0.8458 37 1 -5.2791 4.8876 2.3085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205705865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:33 Heat of formation + Delta-G solvation = 70.173603 kcal Electronic energy + Delta-G solvation = -20408.289450 eV Core-core repulsion = 17223.381134 eV Total energy + Delta-G solvation = -3184.908316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.99413 -39.38037 -35.68466 -34.50130 -33.13969 -32.51244 -31.98570 -30.59683 -28.52221 -27.10636 -26.19518 -23.26867 -22.17288 -20.83271 -20.05198 -19.36953 -17.98931 -17.42371 -16.25906 -15.93746 -15.73118 -15.01555 -14.74767 -14.13756 -13.99951 -13.60908 -13.44184 -13.32984 -13.07454 -12.68156 -12.61411 -12.13430 -11.53111 -11.47066 -11.21656 -10.95217 -10.81571 -10.45163 -10.28822 -10.13252 -9.87073 -9.58907 -9.55291 -9.31897 -8.99568 -8.47483 -8.35965 -7.75064 -6.09469 -4.18629 1.74681 2.26481 2.96464 2.98245 3.26813 3.33784 3.36421 4.08314 4.18871 4.34173 4.43189 4.85718 4.96380 5.01809 5.16193 5.22185 5.28666 5.44725 5.48998 5.79370 6.44895 6.46291 6.54439 6.71161 6.77452 7.00477 7.05013 7.17025 7.34007 7.43240 7.50014 7.67705 7.85362 7.96393 8.21636 8.36958 8.77951 8.90369 9.30521 9.49930 10.95966 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.004060 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.274425 B = 6894.717460 C = 7224.761154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.546 6.546 16 N -0.645 5.645 17 C 0.464 3.536 18 N -0.562 5.562 19 C 0.282 3.718 20 C -0.073 4.073 21 N -0.388 5.388 22 C 0.101 3.899 23 N -0.286 5.286 24 H 0.021 0.979 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.414 0.586 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 8.664 12.036 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.368 5.368 14 C 0.390 3.610 15 O -0.418 6.418 16 N -0.302 5.302 17 C 0.093 3.907 18 N -0.296 5.296 19 C 0.005 3.995 20 C -0.132 4.132 21 N -0.181 5.181 22 C -0.042 4.042 23 N -0.121 5.121 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.855 8.192 10.407 19.167 hybrid contribution 1.432 0.047 0.669 1.581 sum -12.423 8.238 11.077 18.572 Atomic orbital electron populations 1.21814 0.98244 0.97853 1.01355 1.21967 0.92696 0.99830 1.02246 1.18746 0.94019 0.88874 0.79769 0.93157 1.21227 0.90596 1.39034 1.06344 0.92006 1.24873 0.98617 0.94830 0.95348 1.69897 1.35109 1.37559 1.09340 0.86438 0.84825 0.78418 0.77347 1.20561 1.21103 1.19868 1.45764 1.12848 1.58799 1.19429 1.16034 0.84048 0.79143 0.81749 1.91001 1.51242 1.62620 1.36966 1.41974 1.12081 1.58573 1.17581 1.20028 0.88016 0.94528 0.88079 1.70074 1.10048 1.21918 1.27594 1.24071 0.91853 0.96811 0.86749 1.20339 0.97579 0.99067 0.96240 1.50285 1.14131 1.42861 1.10803 1.21850 0.80464 1.03159 0.98693 1.79026 0.94716 1.20317 1.18021 0.96031 0.94331 0.93119 0.88225 0.95028 0.92559 0.78139 0.74979 0.89235 0.88585 0.90007 0.90464 0.88842 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.87 16 2 C -0.13 -3.20 5.45 -26.72 -0.15 -3.35 16 3 C 0.29 7.38 2.24 -69.08 -0.15 7.23 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 13 N -0.72 -15.38 5.03 -59.81 -0.30 -15.68 16 14 C 0.69 15.05 7.10 -86.91 -0.62 14.44 16 15 O -0.55 -13.91 12.17 5.29 0.06 -13.84 16 16 N -0.64 -11.71 5.44 -17.22 -0.09 -11.80 16 17 C 0.46 8.73 8.83 -320.84 -2.83 5.90 16 18 N -0.56 -9.02 11.21 -11.07 -0.12 -9.14 16 19 C 0.28 3.57 7.98 -155.73 -1.24 2.33 16 20 C -0.07 -0.46 10.00 36.01 0.36 -0.10 16 21 N -0.39 -5.43 4.03 -65.10 -0.26 -5.70 16 22 C 0.10 0.84 11.15 59.85 0.67 1.51 16 23 N -0.29 -5.62 10.88 30.04 0.33 -5.29 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 26 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 27 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 7.09 8.55 -40.82 -0.35 6.74 16 31 H 0.41 6.01 8.84 -40.82 -0.36 5.65 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.31 7.75 -51.93 -0.40 -0.09 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.39 7.70 -51.93 -0.40 -0.01 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -35.58 310.92 -9.13 -44.71 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.99 Total: 8.30 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -4.04 Total: 12.29 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: 0.17 Total: -71.86 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.06 Total: -13.84 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.58 -9.13 -44.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205705865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.885 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds