Wall clock time and date at job start Mon Mar 30 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53008 * 109.46592 * 2 1 4 4 H 1.08990 * 109.47077 * 304.99719 * 3 2 1 5 5 C 1.50706 * 109.46506 * 185.00150 * 3 2 1 6 6 H 1.08000 * 119.99360 * 239.99648 * 5 3 2 7 7 C 1.37874 * 120.00245 * 60.00041 * 5 3 2 8 8 N 1.31508 * 119.99968 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99843 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47168 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47012 * 209.99746 * 9 7 5 12 12 H 1.48495 * 109.47537 * 330.00009 * 9 7 5 13 13 N 1.46493 * 109.47286 * 65.00428 * 3 2 1 14 14 C 1.34788 * 119.99654 * 274.99810 * 13 3 2 15 15 O 1.21581 * 119.99882 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99793 * 180.02562 * 14 13 3 17 17 C 1.39884 * 119.99521 * 179.97438 * 16 14 13 18 18 N 1.33630 * 125.60062 * 180.02562 * 17 16 14 19 19 C 1.30860 * 109.77815 * 180.02562 * 18 17 16 20 20 C 1.50706 * 125.89977 * 179.97438 * 19 18 17 21 21 N 1.34363 * 108.20135 * 359.97438 * 19 18 17 22 22 C 1.46506 * 126.76518 * 179.97438 * 21 19 18 23 23 N 1.31161 * 125.60618 * 0.35646 * 17 16 14 24 24 H 1.08999 * 109.46773 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47083 * 300.00360 * 1 2 3 26 26 H 1.09002 * 109.46889 * 59.99866 * 1 2 3 27 27 H 1.08994 * 109.47294 * 240.00151 * 2 1 3 28 28 H 1.08997 * 109.47204 * 119.99815 * 2 1 3 29 29 H 0.97000 * 120.00280 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00676 * 94.99483 * 13 3 2 31 31 H 0.96996 * 120.00001 * 359.97438 * 16 14 13 32 32 H 1.09000 * 109.46759 * 270.00332 * 20 19 18 33 33 H 1.09003 * 109.47207 * 29.99907 * 20 19 18 34 34 H 1.08992 * 109.46956 * 149.99998 * 20 19 18 35 35 H 1.08999 * 109.46892 * 90.00522 * 22 21 19 36 36 H 1.09000 * 109.46803 * 209.99696 * 22 21 19 37 37 H 1.09000 * 109.47214 * 330.00489 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4063 0.3367 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5549 -0.3500 -0.7602 11 1 6.3830 0.9225 -2.8173 12 1 6.5570 2.0739 -0.6902 13 7 1.6525 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3413 2.6326 0.4318 16 7 0.0787 3.2674 2.5184 17 6 -1.1846 3.8561 2.6377 18 7 -1.6522 4.4813 3.7222 19 6 -2.8666 4.9129 3.4954 20 6 -3.7334 5.6661 4.4714 21 7 -3.2071 4.5687 2.2420 22 6 -4.4782 4.8500 1.5701 23 7 -2.1070 3.8800 1.7055 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0611 -2.9498 30 1 2.2719 2.1232 1.9978 31 1 0.6982 3.2931 3.2643 32 1 -4.3233 4.9587 5.0543 33 1 -3.1030 6.2516 5.1405 34 1 -4.4009 6.3325 3.9252 35 1 -4.4129 5.8088 1.0558 36 1 -4.6882 4.0629 0.8458 37 1 -5.2791 4.8876 2.3085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205705865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:33 Heat of formation + Delta-G solvation = 45.630631 kcal Electronic energy + Delta-G solvation = -20409.353713 eV Core-core repulsion = 17223.381134 eV Total energy + Delta-G solvation = -3185.972579 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.15114 -41.08607 -37.41327 -36.07411 -34.54556 -34.09674 -33.29511 -32.40174 -29.38113 -29.00704 -27.23895 -25.16789 -23.75535 -22.00077 -21.72850 -21.12688 -19.58549 -18.81911 -17.77371 -17.40975 -17.13372 -16.66409 -16.42879 -15.84329 -15.24492 -14.86955 -14.57365 -14.45169 -14.18224 -14.05947 -13.69550 -13.46792 -13.18663 -13.16233 -12.89224 -12.66120 -12.49587 -12.19104 -12.07950 -11.77727 -11.54851 -11.27367 -11.05341 -10.94557 -10.71623 -10.53361 -9.86807 -9.45844 -8.15126 -6.32415 0.66684 1.08087 1.46722 1.47493 1.57923 1.65268 1.77719 2.41741 2.46380 3.13611 3.19246 3.38487 3.73180 4.28272 4.42594 4.48203 4.51849 4.55718 4.67686 4.73197 4.74951 4.76882 5.05043 5.08487 5.21516 5.31332 5.43073 5.49035 5.59741 5.62040 5.69779 5.83979 5.98795 6.12326 6.16479 6.74403 6.97551 7.32453 7.36179 7.65903 8.90666 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.004060 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.274425 B = 6894.717460 C = 7224.761154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.694 3.306 15 O -0.586 6.586 16 N -0.632 5.632 17 C 0.443 3.557 18 N -0.582 5.582 19 C 0.292 3.708 20 C -0.070 4.070 21 N -0.389 5.389 22 C 0.089 3.911 23 N -0.346 5.346 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.024 0.976 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.430 0.570 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.036 9.664 14.202 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.363 5.363 14 C 0.393 3.607 15 O -0.461 6.461 16 N -0.290 5.290 17 C 0.072 3.928 18 N -0.317 5.317 19 C 0.016 3.984 20 C -0.129 4.129 21 N -0.182 5.182 22 C -0.051 4.051 23 N -0.182 5.182 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.239 0.761 31 H 0.269 0.731 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.473 9.227 12.643 21.318 hybrid contribution 1.436 -0.167 0.031 1.446 sum -13.037 9.060 12.673 20.314 Atomic orbital electron populations 1.21623 0.97282 0.98809 0.99907 1.21815 0.93395 0.99212 1.01513 1.18331 0.93679 0.88788 0.79795 0.98300 1.21552 0.91047 1.39119 1.06898 0.90810 1.25768 1.03421 0.94314 0.94909 1.70050 1.37114 1.38238 1.09868 0.85328 0.78895 0.78874 0.77110 1.19579 1.21300 1.18954 1.45377 1.13363 1.58719 1.18816 1.16040 0.83515 0.78963 0.82174 1.90974 1.52365 1.64003 1.38784 1.41543 1.12729 1.57851 1.16839 1.20211 0.87947 0.95500 0.89127 1.70097 1.11883 1.22792 1.26971 1.25275 0.91267 0.95035 0.86854 1.20697 0.97296 0.99457 0.95406 1.50521 1.14185 1.42015 1.11457 1.22326 0.79370 1.03368 1.00026 1.78833 0.96706 1.22362 1.20318 0.93687 0.94597 0.95693 0.90611 0.93829 0.92542 0.76139 0.73098 0.86882 0.87787 0.86636 0.88895 0.90102 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.99 0.61 -5.12 16 2 C -0.12 -6.13 5.45 30.60 0.17 -5.96 16 3 C 0.30 15.73 2.24 44.25 0.10 15.83 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 6 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -52.81 11.29 21.44 0.24 -52.57 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.71 -30.97 5.03 -461.41 -2.32 -33.29 16 14 C 0.69 31.08 7.10 179.05 1.27 32.35 16 15 O -0.59 -31.23 12.17 -3.97 -0.05 -31.28 16 16 N -0.63 -23.25 5.44 -326.66 -1.78 -25.03 16 17 C 0.44 16.82 8.83 260.80 2.30 19.12 16 18 N -0.58 -18.15 11.21 -188.93 -2.12 -20.27 16 19 C 0.29 6.76 7.98 138.24 1.10 7.86 16 20 C -0.07 -0.59 10.00 71.24 0.71 0.12 16 21 N -0.39 -10.43 4.03 -359.88 -1.45 -11.88 16 22 C 0.09 1.30 11.15 127.77 1.42 2.72 16 23 N -0.35 -13.86 10.88 -58.88 -0.64 -14.50 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.03 1.72 5.64 -2.39 -0.01 1.71 16 26 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 27 H 0.08 4.26 5.95 -2.39 -0.01 4.25 16 28 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.40 14.67 8.55 -92.71 -0.79 13.88 16 31 H 0.43 12.42 8.84 -92.71 -0.82 11.60 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.12 0.25 7.75 -2.39 -0.02 0.23 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.14 0.63 7.70 -2.39 -0.02 0.61 16 Total: -1.00 -81.31 310.92 1.77 -79.53 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: -0.50 Total: 25.72 kcal Atomic # 6 Polarization: 30.77 SS G_CDS: 8.36 Total: 39.13 kcal Atomic # 7 Polarization: -149.47 SS G_CDS: -8.06 Total: -157.53 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.28 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -81.31 1.77 -79.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205705865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.165 kcal (2) G-P(sol) polarization free energy of solvation -81.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds