Wall clock time and date at job start Mon Mar 30 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.08993 * 109.46756 * 55.00315 * 3 2 1 5 5 C 1.50699 * 109.47049 * 175.00306 * 3 2 1 6 6 H 1.08004 * 119.99929 * 119.99749 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00201 * 5 3 2 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99897 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47196 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47015 * 120.00077 * 9 7 5 12 12 H 1.48494 * 109.47234 * 239.99891 * 9 7 5 13 13 N 1.46499 * 109.47215 * 295.00234 * 3 2 1 14 14 C 1.34777 * 120.00065 * 84.99926 * 13 3 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 3 17 17 C 1.39885 * 119.99908 * 180.27720 * 16 14 13 18 18 N 1.33622 * 125.60316 * 179.71990 * 17 16 14 19 19 C 1.30868 * 109.77919 * 180.02562 * 18 17 16 20 20 C 1.50699 * 125.89798 * 179.97438 * 19 18 17 21 21 N 1.34363 * 108.19975 * 0.02562 * 19 18 17 22 22 C 1.46498 * 126.76443 * 180.02562 * 21 19 18 23 23 N 1.31169 * 125.60172 * 359.42009 * 17 16 14 24 24 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46537 * 299.99451 * 1 2 3 26 26 H 1.08994 * 109.47377 * 60.00048 * 1 2 3 27 27 H 1.08996 * 109.46853 * 240.00870 * 2 1 3 28 28 H 1.08994 * 109.47377 * 119.99952 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00386 * 265.00295 * 13 3 2 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.08999 * 109.47248 * 90.02472 * 20 19 18 33 33 H 1.09000 * 109.46981 * 210.02463 * 20 19 18 34 34 H 1.09004 * 109.47076 * 330.02503 * 20 19 18 35 35 H 1.09005 * 109.47342 * 90.00022 * 22 21 19 36 36 H 1.09002 * 109.47019 * 209.99777 * 22 21 19 37 37 H 1.08995 * 109.47360 * 330.00152 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2278 8 7 3.4062 0.3375 2.1732 9 14 6.0050 0.8802 1.3809 10 1 6.5988 1.5455 0.1934 11 1 6.4001 1.6158 2.6090 12 1 6.4963 -0.5188 1.4624 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0782 3.2666 -2.5186 17 6 -1.1831 3.8600 -2.6361 18 7 -1.6491 4.4889 -3.7190 19 6 -2.8615 4.9253 -3.4903 20 6 -3.7256 5.6847 -4.4638 21 7 -3.2023 4.5803 -2.2372 22 6 -4.4715 4.8657 -1.5636 23 7 -2.1048 3.8856 -1.7032 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0610 2.9498 30 1 2.2718 2.1233 -1.9978 31 1 0.6977 3.2923 -3.2646 32 1 -4.3193 4.9815 -5.0479 33 1 -4.3896 6.3530 -3.9155 34 1 -3.0930 6.2689 -5.1321 35 1 -5.1709 4.0496 -1.7453 36 1 -4.2997 4.9651 -0.4918 37 1 -4.8884 5.7947 -1.9525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205705866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:36 Heat of formation + Delta-G solvation = 70.306671 kcal Electronic energy + Delta-G solvation = -20407.969970 eV Core-core repulsion = 17223.067424 eV Total energy + Delta-G solvation = -3184.902546 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99406 -39.37953 -35.68606 -34.50223 -33.14035 -32.51272 -31.98760 -30.59835 -28.51840 -27.10940 -26.20044 -23.26988 -22.17243 -20.83092 -20.05186 -19.36955 -17.98960 -17.43009 -16.26529 -15.94280 -15.73317 -15.02436 -14.74375 -14.13309 -14.00001 -13.57903 -13.53635 -13.32425 -13.05270 -12.62949 -12.61554 -12.13925 -11.53475 -11.47311 -11.22702 -10.92228 -10.83912 -10.45602 -10.27955 -10.13653 -9.87017 -9.58614 -9.54899 -9.31738 -8.99329 -8.47572 -8.36150 -7.75176 -6.09764 -4.18779 1.74967 2.26227 2.96417 2.98245 3.26045 3.34017 3.36998 4.08262 4.18883 4.34373 4.45208 4.78665 4.94854 5.01539 5.18120 5.22036 5.29675 5.45239 5.50670 5.79048 6.44828 6.46304 6.54461 6.71174 6.77392 7.00434 7.05001 7.17030 7.34045 7.43221 7.49969 7.67810 7.85262 7.96303 8.21471 8.36930 8.78072 8.90341 9.30488 9.49839 10.95724 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039574 B = 0.004060 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.369467 B = 6894.393011 C = 7223.612408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.546 6.546 16 N -0.645 5.645 17 C 0.464 3.536 18 N -0.562 5.562 19 C 0.282 3.718 20 C -0.073 4.073 21 N -0.388 5.388 22 C 0.101 3.899 23 N -0.286 5.286 24 H 0.021 0.979 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.031 0.969 28 H 0.100 0.900 29 H 0.264 0.736 30 H 0.386 0.614 31 H 0.414 0.586 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.381 8.820 -11.992 20.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.390 3.610 15 O -0.418 6.418 16 N -0.302 5.302 17 C 0.094 3.906 18 N -0.296 5.296 19 C 0.005 3.995 20 C -0.132 4.132 21 N -0.180 5.180 22 C -0.042 4.042 23 N -0.121 5.121 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.790 8.342 -10.371 19.166 hybrid contribution 1.418 0.030 -0.662 1.565 sum -12.372 8.373 -11.033 18.572 Atomic orbital electron populations 1.21811 0.98239 0.97858 1.01357 1.21964 0.92702 0.99826 1.02243 1.18751 0.94040 0.88880 0.79769 0.93157 1.21264 0.90598 1.38938 1.06326 0.91948 1.24880 0.98624 0.94832 0.95361 1.69912 1.35015 1.37643 1.09329 0.86385 0.84818 0.77731 0.78101 1.19739 1.20919 1.20893 1.45763 1.12846 1.58793 1.19430 1.16035 0.84044 0.79154 0.81744 1.91005 1.51240 1.62621 1.36974 1.41976 1.12218 1.58453 1.17560 1.20029 0.88018 0.94468 0.88126 1.70075 1.10149 1.21816 1.27609 1.24067 0.91849 0.96855 0.86732 1.20341 0.97610 0.98974 0.96268 1.50282 1.14254 1.42688 1.10825 1.21851 0.80839 1.01703 0.99769 1.79033 0.94791 1.20182 1.18083 0.96030 0.93119 0.94328 0.95024 0.88229 0.92618 0.78135 0.74978 0.89203 0.90034 0.88619 0.90463 0.88871 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.20 5.45 -26.73 -0.15 -3.35 16 3 C 0.29 7.37 2.24 -69.08 -0.15 7.22 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.87 11.29 55.43 0.63 -24.25 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 N -0.72 -15.37 5.03 -59.81 -0.30 -15.67 16 14 C 0.69 15.05 7.10 -86.92 -0.62 14.43 16 15 O -0.55 -13.91 12.17 5.28 0.06 -13.85 16 16 N -0.64 -11.70 5.44 -17.22 -0.09 -11.80 16 17 C 0.46 8.73 8.83 -320.84 -2.83 5.90 16 18 N -0.56 -9.02 11.21 -11.07 -0.12 -9.14 16 19 C 0.28 3.57 7.98 -155.72 -1.24 2.33 16 20 C -0.07 -0.46 10.20 36.01 0.37 -0.09 16 21 N -0.39 -5.43 4.03 -65.11 -0.26 -5.69 16 22 C 0.10 0.84 11.32 59.85 0.68 1.52 16 23 N -0.29 -5.62 10.88 30.04 0.33 -5.29 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 26 H 0.04 0.91 5.65 -51.93 -0.29 0.62 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.39 7.09 8.55 -40.82 -0.35 6.74 16 31 H 0.41 6.01 8.84 -40.82 -0.36 5.65 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.30 7.11 -51.93 -0.37 -0.07 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.39 7.09 -51.93 -0.37 0.02 16 LS Contribution 310.06 15.07 4.67 4.67 Total: -1.00 -35.59 310.06 -9.06 -44.66 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.93 Total: 8.34 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: -4.02 Total: 12.31 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: 0.17 Total: -71.84 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.06 Total: -13.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.59 -9.06 -44.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205705866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.962 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds