Wall clock time and date at job start Mon Mar 30 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.08993 * 109.46756 * 55.00315 * 3 2 1 5 5 C 1.50699 * 109.47049 * 175.00306 * 3 2 1 6 6 H 1.08004 * 119.99929 * 119.99749 * 5 3 2 7 7 C 1.37876 * 119.99861 * 300.00201 * 5 3 2 8 8 N 1.31515 * 120.00071 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99897 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47196 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47015 * 120.00077 * 9 7 5 12 12 H 1.48494 * 109.47234 * 239.99891 * 9 7 5 13 13 N 1.46499 * 109.47215 * 295.00234 * 3 2 1 14 14 C 1.34777 * 120.00065 * 84.99926 * 13 3 2 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 3 17 17 C 1.39885 * 119.99908 * 180.27720 * 16 14 13 18 18 N 1.33622 * 125.60316 * 179.71990 * 17 16 14 19 19 C 1.30868 * 109.77919 * 180.02562 * 18 17 16 20 20 C 1.50699 * 125.89798 * 179.97438 * 19 18 17 21 21 N 1.34363 * 108.19975 * 0.02562 * 19 18 17 22 22 C 1.46498 * 126.76443 * 180.02562 * 21 19 18 23 23 N 1.31169 * 125.60172 * 359.42009 * 17 16 14 24 24 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46537 * 299.99451 * 1 2 3 26 26 H 1.08994 * 109.47377 * 60.00048 * 1 2 3 27 27 H 1.08996 * 109.46853 * 240.00870 * 2 1 3 28 28 H 1.08994 * 109.47377 * 119.99952 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00386 * 265.00295 * 13 3 2 31 31 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 32 32 H 1.08999 * 109.47248 * 90.02472 * 20 19 18 33 33 H 1.09000 * 109.46981 * 210.02463 * 20 19 18 34 34 H 1.09004 * 109.47076 * 330.02503 * 20 19 18 35 35 H 1.09005 * 109.47342 * 90.00022 * 22 21 19 36 36 H 1.09002 * 109.47019 * 209.99777 * 22 21 19 37 37 H 1.08995 * 109.47360 * 330.00152 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4445 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8785 1.2278 8 7 3.4062 0.3375 2.1732 9 14 6.0050 0.8802 1.3809 10 1 6.5988 1.5455 0.1934 11 1 6.4001 1.6158 2.6090 12 1 6.4963 -0.5188 1.4624 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0782 3.2666 -2.5186 17 6 -1.1831 3.8600 -2.6361 18 7 -1.6491 4.4889 -3.7190 19 6 -2.8615 4.9253 -3.4903 20 6 -3.7256 5.6847 -4.4638 21 7 -3.2023 4.5803 -2.2372 22 6 -4.4715 4.8657 -1.5636 23 7 -2.1048 3.8856 -1.7032 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0610 2.9498 30 1 2.2718 2.1233 -1.9978 31 1 0.6977 3.2923 -3.2646 32 1 -4.3193 4.9815 -5.0479 33 1 -4.3896 6.3530 -3.9155 34 1 -3.0930 6.2689 -5.1321 35 1 -5.1709 4.0496 -1.7453 36 1 -4.2997 4.9651 -0.4918 37 1 -4.8884 5.7947 -1.9525 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205705866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:36 Heat of formation + Delta-G solvation = 45.719278 kcal Electronic energy + Delta-G solvation = -20409.036159 eV Core-core repulsion = 17223.067424 eV Total energy + Delta-G solvation = -3185.968735 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.15089 -41.08496 -37.41386 -36.07433 -34.54658 -34.09672 -33.29640 -32.40388 -29.37787 -29.00920 -27.24542 -25.16939 -23.75482 -21.99973 -21.72829 -21.12580 -19.58479 -18.82334 -17.77749 -17.41098 -17.14140 -16.66251 -16.42941 -15.84064 -15.24779 -14.86248 -14.57714 -14.48178 -14.21976 -14.03969 -13.69924 -13.47261 -13.19145 -13.10667 -12.86166 -12.70146 -12.50532 -12.17875 -12.06870 -11.78324 -11.54897 -11.27144 -11.04655 -10.94700 -10.71002 -10.54038 -9.86979 -9.46038 -8.15352 -6.32478 0.66877 1.07926 1.45945 1.47127 1.59017 1.65313 1.77662 2.41675 2.46320 3.13525 3.19085 3.39168 3.73816 4.23501 4.41075 4.48152 4.51705 4.55672 4.67111 4.74158 4.75706 4.78343 5.05132 5.09155 5.21568 5.31209 5.43046 5.49036 5.59801 5.62134 5.69750 5.83927 5.98684 6.12256 6.16415 6.74621 6.97553 7.32457 7.36146 7.65898 8.90666 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039574 B = 0.004060 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.369467 B = 6894.393011 C = 7223.612408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.973 3.027 10 H -0.260 1.260 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.709 5.709 14 C 0.694 3.306 15 O -0.586 6.586 16 N -0.632 5.632 17 C 0.443 3.557 18 N -0.582 5.582 19 C 0.291 3.709 20 C -0.069 4.069 21 N -0.389 5.389 22 C 0.089 3.911 23 N -0.346 5.346 24 H 0.044 0.956 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.075 0.925 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.430 0.570 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.960 9.860 -14.152 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.363 5.363 14 C 0.393 3.607 15 O -0.461 6.461 16 N -0.290 5.290 17 C 0.072 3.928 18 N -0.318 5.318 19 C 0.015 3.985 20 C -0.128 4.128 21 N -0.181 5.181 22 C -0.051 4.051 23 N -0.182 5.182 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.269 0.731 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.398 9.417 -12.601 21.325 hybrid contribution 1.417 -0.199 -0.025 1.431 sum -12.981 9.218 -12.626 20.320 Atomic orbital electron populations 1.21621 0.97287 0.98809 0.99905 1.21812 0.93391 0.99213 1.01515 1.18337 0.93699 0.88792 0.79795 0.98297 1.21581 0.91036 1.39013 1.06862 0.90793 1.25773 1.03418 0.94325 0.94927 1.70061 1.37042 1.38313 1.09874 0.85280 0.78916 0.77829 0.78175 1.18420 1.21104 1.20369 1.45375 1.13359 1.58713 1.18817 1.16041 0.83512 0.78974 0.82167 1.90977 1.52364 1.64006 1.38791 1.41544 1.12865 1.57734 1.16815 1.20211 0.87956 0.95446 0.89161 1.70098 1.11972 1.22690 1.26997 1.25269 0.91223 0.95107 0.86857 1.20698 0.97339 0.99314 0.95464 1.50517 1.14320 1.41782 1.11527 1.22327 0.78918 1.04685 0.99150 1.78840 0.96811 1.22192 1.20389 0.93692 0.95696 0.94598 0.93809 0.90619 0.92552 0.76138 0.73098 0.86994 0.86554 0.87787 0.88873 0.90167 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.96 16 3 C 0.30 15.71 2.24 44.25 0.10 15.81 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.25 8.73 25.60 0.22 -29.03 16 6 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.91 -52.79 11.29 21.45 0.24 -52.55 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 10 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 13 N -0.71 -30.95 5.03 -461.40 -2.32 -33.27 16 14 C 0.69 31.07 7.10 179.05 1.27 32.34 16 15 O -0.59 -31.23 12.17 -4.01 -0.05 -31.28 16 16 N -0.63 -23.24 5.44 -326.65 -1.78 -25.02 16 17 C 0.44 16.82 8.83 260.80 2.30 19.12 16 18 N -0.58 -18.15 11.21 -188.93 -2.12 -20.27 16 19 C 0.29 6.75 7.98 138.24 1.10 7.85 16 20 C -0.07 -0.59 10.20 71.24 0.73 0.14 16 21 N -0.39 -10.42 4.03 -359.90 -1.45 -11.87 16 22 C 0.09 1.30 11.32 127.77 1.45 2.74 16 23 N -0.35 -13.86 10.88 -58.88 -0.64 -14.50 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.02 1.29 7.84 -2.39 -0.02 1.27 16 26 H 0.03 1.73 5.65 -2.39 -0.01 1.71 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 4.26 5.95 -2.39 -0.01 4.24 16 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.40 14.67 8.55 -92.71 -0.79 13.88 16 31 H 0.43 12.42 8.84 -92.71 -0.82 11.60 16 32 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.12 0.21 7.11 -2.39 -0.02 0.20 16 34 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.14 0.61 7.09 -2.39 -0.02 0.60 16 Total: -1.00 -81.35 310.06 1.81 -79.54 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.50 Total: 25.60 kcal Atomic # 6 Polarization: 30.80 SS G_CDS: 8.40 Total: 39.20 kcal Atomic # 7 Polarization: -149.42 SS G_CDS: -8.06 Total: -157.49 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.05 Total: -31.28 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -81.35 1.81 -79.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205705866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.259 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds