Wall clock time and date at job start Mon Mar 30 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 19 19 C 1.38430 * 122.54075 * 269.73586 * 18 17 16 20 20 C 1.33384 * 114.91700 * 179.76204 * 19 18 17 21 21 S 1.75887 * 109.59901 * 0.47822 * 20 19 18 22 22 C 1.33396 * 122.53978 * 90.02845 * 18 17 16 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 31 31 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 32 32 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 33 33 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 34 34 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 35 35 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 36 36 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 37 37 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 38 38 H 1.07999 * 122.53455 * 0.02562 * 19 18 17 39 39 H 1.08007 * 125.19891 * 180.21010 * 20 19 18 40 40 H 1.07998 * 125.19931 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7812 0.3059 7.3650 19 6 2.5759 1.3032 7.9037 20 6 2.0576 1.9229 8.9650 21 16 0.4864 1.2292 9.3443 22 6 0.6223 0.1086 7.9955 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9246 -1.8413 -4.7316 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 0.6528 0.1793 2.4752 32 1 1.6920 -1.6245 3.7300 33 1 3.2126 -0.7037 3.6401 34 1 2.1373 1.1894 4.8260 35 1 0.6164 0.2691 4.9165 36 1 1.7623 -1.4979 6.2243 37 1 3.2836 -0.5783 6.1344 38 1 3.5404 1.5627 7.4929 39 1 2.5322 2.7250 9.5109 40 1 -0.1189 -0.6270 7.7200 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207837293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:54 Heat of formation + Delta-G solvation = 0.159324 kcal Electronic energy + Delta-G solvation = -17069.479687 eV Core-core repulsion = 14395.535787 eV Total energy + Delta-G solvation = -2673.943900 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.77544 -37.09683 -34.76138 -32.77381 -31.51804 -29.41488 -27.03853 -26.35907 -24.70147 -23.09090 -22.00348 -21.40465 -18.94295 -18.88095 -17.82032 -16.45574 -16.00612 -15.36832 -14.73513 -14.58056 -14.22878 -13.88138 -13.34914 -13.27372 -13.16050 -12.73179 -12.52526 -12.33064 -12.01996 -11.71051 -11.67486 -11.41348 -11.27067 -10.90571 -10.87320 -10.78150 -10.64365 -10.30758 -10.15848 -9.69160 -9.13755 -9.05026 -8.93930 -8.60379 -8.31066 -8.10141 -5.95782 -3.96801 0.75724 1.41628 1.73597 2.45575 3.34496 3.40607 3.43930 4.38521 4.51174 4.62538 4.76098 4.93549 5.07796 5.24246 5.32235 5.39473 5.39980 5.47944 5.61424 5.74469 5.76814 5.81267 5.85086 6.05174 6.08202 6.15886 6.22870 6.30094 6.32010 6.50044 6.58847 6.97832 7.13316 7.19974 7.41669 7.69301 7.72698 7.88654 8.04711 8.48673 9.09603 9.66448 11.15773 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054308 B = 0.002328 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.451598 B =12025.642700 C =12159.339318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.692 5.692 15 C 0.057 3.943 16 C -0.110 4.110 17 C -0.060 4.060 18 C -0.095 4.095 19 C -0.128 4.128 20 C -0.212 4.212 21 S 0.080 5.920 22 C -0.213 4.213 23 H 0.031 0.969 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.259 0.741 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.337 0.663 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.163 0.837 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 3.177 26.077 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.324 5.324 15 C -0.072 4.072 16 C -0.148 4.148 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.159 4.159 20 C -0.347 4.347 21 S 0.344 5.656 22 C -0.348 4.348 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.094 3.768 27.044 27.480 hybrid contribution 0.228 -0.568 -1.914 2.009 sum -2.866 3.200 25.130 25.495 Atomic orbital electron populations 1.21741 0.96727 1.00396 1.00267 1.21223 0.94846 1.00090 0.94180 0.91661 1.19115 0.96137 0.95367 0.90397 1.21244 1.34578 1.08224 0.90991 0.92564 1.25029 0.95377 0.95105 0.99112 1.69966 1.39122 1.21266 1.23353 0.86625 0.78920 0.79805 0.82829 1.20720 1.21342 1.19923 1.22133 1.00302 0.94391 0.89597 1.60558 1.19531 1.50694 1.01580 1.21956 1.00610 0.94966 0.89704 1.21536 1.00983 1.00052 0.92224 1.20322 1.01494 0.97616 0.90664 1.19005 0.94297 0.98611 0.98786 1.20164 1.01712 0.97151 0.96857 1.25595 0.99183 1.06507 1.03457 1.84265 1.18561 1.31587 1.31201 1.25471 1.02346 1.05978 1.00993 0.94964 0.91870 0.94066 0.96665 0.96764 0.93118 0.95923 0.91531 0.84450 0.95730 0.91196 0.90899 0.92156 0.91069 0.90672 0.84110 0.81947 0.81987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 3 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.14 5.14 -3.83 -0.02 1.12 16 14 N -0.69 -10.33 6.50 -113.78 -0.74 -11.07 16 15 C 0.06 0.69 5.69 -3.82 -0.02 0.67 16 16 C -0.11 -1.12 5.46 -26.73 -0.15 -1.26 16 17 C -0.06 -0.52 5.47 -27.89 -0.15 -0.68 16 18 C -0.09 -0.86 5.06 -106.24 -0.54 -1.40 16 19 C -0.13 -1.11 9.98 -41.21 -0.41 -1.52 16 20 C -0.21 -1.69 11.23 29.04 0.33 -1.36 16 21 S 0.08 0.65 23.34 -107.50 -2.51 -1.86 16 22 C -0.21 -1.85 10.98 29.04 0.32 -1.53 16 23 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 24 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.34 4.78 6.98 -39.29 -0.27 4.50 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 37 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.14 340.43 -10.29 -40.43 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.83 Total: -0.16 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.06 Total: -22.85 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.00 Total: -37.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.65 SS G_CDS: -2.51 Total: -1.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.14 -10.29 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207837293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.588 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds