Wall clock time and date at job start Mon Mar 30 2020 00:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46854 * 179.97438 * 17 16 15 19 19 C 1.38430 * 122.54075 * 269.73586 * 18 17 16 20 20 C 1.33384 * 114.91700 * 179.76204 * 19 18 17 21 21 S 1.75887 * 109.59901 * 0.47822 * 20 19 18 22 22 C 1.33396 * 122.53978 * 90.02845 * 18 17 16 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 27 27 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 31 31 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 32 32 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 33 33 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 34 34 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 35 35 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 36 36 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 37 37 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 38 38 H 1.07999 * 122.53455 * 0.02562 * 19 18 17 39 39 H 1.08007 * 125.19891 * 180.21010 * 20 19 18 40 40 H 1.07998 * 125.19931 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 6 1.7812 0.3059 7.3650 19 6 2.5759 1.3032 7.9037 20 6 2.0576 1.9229 8.9650 21 16 0.4864 1.2292 9.3443 22 6 0.6223 0.1086 7.9955 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1264 -0.7995 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9246 -1.8413 -4.7316 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 0.6528 0.1793 2.4752 32 1 1.6920 -1.6245 3.7300 33 1 3.2126 -0.7037 3.6401 34 1 2.1373 1.1894 4.8260 35 1 0.6164 0.2691 4.9165 36 1 1.7623 -1.4979 6.2243 37 1 3.2836 -0.5783 6.1344 38 1 3.5404 1.5627 7.4929 39 1 2.5322 2.7250 9.5109 40 1 -0.1189 -0.6270 7.7200 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207837293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:54 Heat of formation + Delta-G solvation = -16.381308 kcal Electronic energy + Delta-G solvation = -17070.196942 eV Core-core repulsion = 14395.535787 eV Total energy + Delta-G solvation = -2674.661155 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45603 -38.46152 -36.16345 -34.47025 -32.88816 -30.24752 -28.85004 -27.54980 -26.09889 -24.30536 -23.34605 -22.29235 -20.57994 -19.56434 -18.53070 -18.43313 -17.13806 -16.61600 -16.19543 -15.66423 -15.52223 -15.29032 -14.45667 -14.34095 -14.07845 -13.91136 -13.74167 -13.53296 -13.31624 -13.14466 -12.79848 -12.74180 -12.57366 -12.47381 -12.27302 -12.13156 -11.89352 -11.64919 -11.52598 -11.42297 -11.06251 -10.89449 -10.52923 -9.67662 -9.31784 -9.24132 -8.16956 -6.26053 0.13417 0.81229 1.11972 1.40643 1.41789 1.52694 1.80935 2.42579 3.16342 3.28811 3.93362 4.06550 4.17409 4.21330 4.28941 4.40078 4.48086 4.51237 4.57563 4.68138 4.75426 4.79269 4.83789 4.88812 4.96043 5.04242 5.12278 5.24021 5.26707 5.37193 5.40486 5.48992 5.55554 5.57837 5.65436 5.81004 5.90002 6.12811 6.32377 6.54479 6.89920 7.42091 8.95139 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.054308 B = 0.002328 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.451598 B =12025.642700 C =12159.339318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.077 3.923 14 N -0.694 5.694 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.055 4.055 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.215 4.215 21 S 0.083 5.917 22 C -0.223 4.223 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.040 0.960 26 H -0.014 1.014 27 H -0.010 1.010 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.344 0.656 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.150 0.850 39 H 0.182 0.818 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 4.142 27.016 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.052 4.052 14 N -0.326 5.326 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.119 4.119 19 C -0.174 4.174 20 C -0.350 4.350 21 S 0.347 5.653 22 C -0.358 4.358 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.167 0.833 39 H 0.199 0.801 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.963 4.744 28.006 28.680 hybrid contribution 0.515 -0.878 -2.140 2.369 sum -3.449 3.866 25.866 26.380 Atomic orbital electron populations 1.21649 0.94968 1.00665 1.01100 1.21025 0.96251 0.98965 0.93282 0.92591 1.19015 0.94218 0.94610 0.92736 1.21643 1.34424 1.08514 0.92067 0.92096 1.25971 0.95309 0.96129 1.02703 1.70101 1.40303 1.22974 1.24276 0.85493 0.79016 0.78354 0.78470 1.19954 1.20906 1.18703 1.21831 0.99545 0.94223 0.89626 1.60488 1.20090 1.50554 1.01505 1.22019 1.00541 0.95479 0.89094 1.21404 1.00964 0.99293 0.91952 1.20257 1.01810 0.97706 0.89729 1.19122 0.94643 0.99013 0.99115 1.20363 1.02306 0.97426 0.97336 1.25901 0.99048 1.06735 1.03314 1.84250 1.18734 1.31395 1.30957 1.25707 1.02580 1.06365 1.01159 0.91478 0.93627 0.94063 0.99536 0.99162 0.92948 0.95905 0.92538 0.83720 0.95015 0.91371 0.91789 0.91988 0.90336 0.90206 0.83256 0.80082 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 8.77 71.98 0.63 -4.01 16 2 C -0.08 -3.16 2.55 -10.79 -0.03 -3.19 16 3 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.03 1.69 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.20 8.41 25.60 0.22 -29.99 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 9 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 13 C 0.08 2.69 5.14 86.30 0.44 3.13 16 14 N -0.69 -19.63 6.50 -513.89 -3.34 -22.97 16 15 C 0.06 1.30 5.69 86.30 0.49 1.79 16 16 C -0.10 -1.81 5.46 30.59 0.17 -1.65 16 17 C -0.05 -0.85 5.47 29.85 0.16 -0.69 16 18 C -0.11 -1.77 5.06 -20.91 -0.11 -1.88 16 19 C -0.14 -2.29 9.98 21.22 0.21 -2.07 16 20 C -0.21 -3.08 11.23 66.72 0.75 -2.33 16 21 S 0.08 1.22 23.34 -56.49 -1.32 -0.10 16 22 C -0.22 -3.53 10.98 66.72 0.73 -2.80 16 23 H 0.07 1.98 6.68 -2.39 -0.02 1.96 16 24 H 0.04 1.81 6.95 -2.39 -0.02 1.80 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.34 8.94 6.98 -89.69 -0.63 8.31 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -64.55 340.43 2.29 -62.26 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.37 Total: 12.98 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 4.27 Total: -41.62 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.05 Total: -80.39 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -64.55 2.29 -62.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207837293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.878 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds