Wall clock time and date at job start Mon Mar 30 2020 00:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 5 5 C 1.50700 * 109.46923 * 294.99905 * 4 2 1 6 6 H 1.07998 * 120.00252 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99978 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46997 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47228 * 119.99913 * 9 7 5 12 12 H 1.48497 * 109.47641 * 240.00503 * 9 7 5 13 13 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 14 14 N 1.46901 * 109.46916 * 64.99745 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47387 * 179.97438 * 17 16 15 19 19 C 1.38420 * 122.54122 * 269.73460 * 18 17 16 20 20 C 1.33387 * 114.92283 * 179.76047 * 19 18 17 21 21 S 1.75890 * 109.59231 * 0.48084 * 20 19 18 22 22 C 1.33386 * 122.53753 * 90.02335 * 18 17 16 23 23 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 24 24 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 25 25 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47107 * 55.00079 * 4 2 1 27 27 H 1.09000 * 109.47382 * 175.00077 * 4 2 1 28 28 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46889 * 305.00126 * 13 2 1 30 30 H 1.08995 * 109.47384 * 184.99766 * 13 2 1 31 31 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 32 32 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 33 33 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 34 34 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 35 35 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 36 36 H 1.09001 * 109.46514 * 300.00105 * 17 16 15 37 37 H 1.08998 * 109.46924 * 59.99625 * 17 16 15 38 38 H 1.07999 * 122.53834 * 359.97438 * 19 18 17 39 39 H 1.07999 * 125.20602 * 180.20961 * 20 19 18 40 40 H 1.08002 * 125.20526 * 0.02854 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4990 0.5627 5.2496 10 1 0.7424 1.7743 4.8434 11 1 0.6443 -0.2858 6.1183 12 1 2.7172 0.9666 5.9965 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1248 -0.6271 -3.6673 16 6 1.7024 0.1910 -4.8892 17 6 2.1949 -0.5014 -6.1616 18 6 1.7783 0.3041 -7.3652 19 6 0.5774 0.0958 -8.0213 20 6 0.3605 0.8977 -9.0649 21 16 1.7308 1.9809 -9.2712 22 6 2.5415 1.2680 -7.8825 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6055 -1.7198 1.2950 27 1 3.1264 -0.7995 1.2055 28 1 2.9229 -1.8423 4.7316 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 0.6528 0.1793 -2.4753 32 1 3.2116 -0.7050 -3.6406 33 1 1.6904 -1.6248 -3.7297 34 1 0.6156 0.2693 -4.9161 35 1 2.1371 1.1886 -4.8265 36 1 3.2817 -0.5800 -6.1350 37 1 1.7598 -1.4988 -6.2241 38 1 -0.1319 -0.6566 -7.7095 39 1 -0.5197 0.8812 -9.6904 40 1 3.5094 1.5651 -7.5065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207837294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:57 Heat of formation + Delta-G solvation = 0.135672 kcal Electronic energy + Delta-G solvation = -17070.030497 eV Core-core repulsion = 14396.085572 eV Total energy + Delta-G solvation = -2673.944925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.77695 -37.09693 -34.76185 -32.77484 -31.51932 -29.41294 -27.03936 -26.35739 -24.70870 -23.08995 -22.00002 -21.40914 -18.94325 -18.88136 -17.83078 -16.44097 -15.79948 -15.70198 -14.66896 -14.46094 -14.19462 -13.94961 -13.38599 -13.26826 -13.22498 -12.62228 -12.56667 -12.33155 -11.99745 -11.74476 -11.65553 -11.45584 -11.25760 -10.88955 -10.83852 -10.81631 -10.64965 -10.30181 -10.15414 -9.69275 -9.13915 -9.04975 -8.92843 -8.60370 -8.31575 -8.10228 -5.96024 -3.96944 0.75901 1.41761 1.73842 2.45140 3.33316 3.40841 3.45068 4.38292 4.50997 4.64421 4.75871 4.90669 5.09418 5.25440 5.32767 5.39788 5.40230 5.45280 5.61613 5.72562 5.78496 5.83026 5.83406 6.04134 6.08536 6.17097 6.22265 6.29283 6.32480 6.50053 6.58828 6.97796 7.13170 7.19976 7.41610 7.69331 7.72791 7.88574 8.04607 8.48631 9.09724 9.66378 11.15586 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.053495 B = 0.002327 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.288243 B =12031.514412 C =12140.852008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.692 5.692 15 C 0.057 3.943 16 C -0.110 4.110 17 C -0.060 4.060 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.213 4.213 21 S 0.082 5.918 22 C -0.210 4.210 23 H 0.062 0.938 24 H 0.031 0.969 25 H 0.040 0.960 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.259 0.741 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 3.039 -26.112 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.073 4.073 16 C -0.148 4.148 17 C -0.101 4.101 18 C -0.108 4.108 19 C -0.160 4.160 20 C -0.348 4.348 21 S 0.345 5.655 22 C -0.345 4.345 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.891 4.520 -26.996 27.438 hybrid contribution -1.197 -1.446 1.836 2.626 sum -3.088 3.074 -25.161 25.535 Atomic orbital electron populations 1.21741 0.96725 1.00393 1.00270 1.21224 0.94850 1.00090 0.94178 0.91663 1.19121 0.96145 0.95372 0.90416 1.21281 1.34464 1.08238 0.90971 0.92507 1.25031 0.95383 0.95112 0.99129 1.69975 1.39200 1.21285 1.23246 0.86570 0.78246 0.80122 0.83274 1.19750 1.21142 1.21085 1.22136 1.00299 0.94396 0.89600 1.60577 1.19540 1.50656 1.01575 1.21956 1.00596 0.94985 0.89713 1.21535 1.01083 0.99959 0.92216 1.20321 1.01383 0.97715 0.90659 1.18992 0.94608 0.98349 0.98888 1.20145 0.97948 1.01552 0.96337 1.25590 1.03181 1.01961 1.04101 1.84276 1.12381 1.38622 1.30202 1.25493 1.05042 1.02755 1.01239 0.91866 0.94964 0.94064 0.96765 0.96658 0.93173 0.95913 0.91538 0.84453 0.91225 0.95702 0.92095 0.90965 0.90814 0.90947 0.84260 0.81984 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.33 6.50 -113.78 -0.74 -11.07 16 15 C 0.06 0.69 5.68 -3.82 -0.02 0.67 16 16 C -0.11 -1.12 5.46 -26.73 -0.15 -1.26 16 17 C -0.06 -0.52 5.47 -27.88 -0.15 -0.67 16 18 C -0.10 -0.88 5.06 -106.25 -0.54 -1.41 16 19 C -0.13 -1.10 9.98 -41.21 -0.41 -1.52 16 20 C -0.21 -1.68 11.23 29.04 0.33 -1.36 16 21 S 0.08 0.66 23.34 -107.50 -2.51 -1.85 16 22 C -0.21 -1.85 10.98 29.04 0.32 -1.53 16 23 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 24 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.34 4.77 6.98 -39.29 -0.27 4.50 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -30.17 340.43 -10.29 -40.46 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.83 Total: -0.22 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.06 Total: -22.84 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.00 Total: -37.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.17 -10.29 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207837294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.595 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds