Wall clock time and date at job start Mon Mar 30 2020 00:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.52999 * 109.47316 * 120.00283 * 2 1 3 5 5 C 1.50700 * 109.46923 * 294.99905 * 4 2 1 6 6 H 1.07998 * 120.00252 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99978 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99827 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46997 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47228 * 119.99913 * 9 7 5 12 12 H 1.48497 * 109.47641 * 240.00503 * 9 7 5 13 13 C 1.53004 * 109.47245 * 240.00131 * 2 1 3 14 14 N 1.46901 * 109.46916 * 64.99745 * 13 2 1 15 15 C 1.46905 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.53004 * 109.47360 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.47387 * 179.97438 * 17 16 15 19 19 C 1.38420 * 122.54122 * 269.73460 * 18 17 16 20 20 C 1.33387 * 114.92283 * 179.76047 * 19 18 17 21 21 S 1.75890 * 109.59231 * 0.48084 * 20 19 18 22 22 C 1.33386 * 122.53753 * 90.02335 * 18 17 16 23 23 H 1.08993 * 109.46950 * 299.99341 * 1 2 3 24 24 H 1.08997 * 109.47303 * 60.00055 * 1 2 3 25 25 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47107 * 55.00079 * 4 2 1 27 27 H 1.09000 * 109.47382 * 175.00077 * 4 2 1 28 28 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46889 * 305.00126 * 13 2 1 30 30 H 1.08995 * 109.47384 * 184.99766 * 13 2 1 31 31 H 1.00901 * 111.00067 * 303.95263 * 14 13 2 32 32 H 1.09001 * 109.46798 * 300.00327 * 15 14 13 33 33 H 1.08998 * 109.46961 * 60.00043 * 15 14 13 34 34 H 1.09001 * 109.47393 * 299.99719 * 16 15 14 35 35 H 1.08998 * 109.47408 * 60.00073 * 16 15 14 36 36 H 1.09001 * 109.46514 * 300.00105 * 17 16 15 37 37 H 1.08998 * 109.46924 * 59.99625 * 17 16 15 38 38 H 1.07999 * 122.53834 * 359.97438 * 19 18 17 39 39 H 1.07999 * 125.20602 * 180.20961 * 20 19 18 40 40 H 1.08002 * 125.20526 * 0.02854 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4990 0.5627 5.2496 10 1 0.7424 1.7743 4.8434 11 1 0.6443 -0.2858 6.1183 12 1 2.7172 0.9666 5.9965 13 6 2.0401 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1248 -0.6271 -3.6673 16 6 1.7024 0.1910 -4.8892 17 6 2.1949 -0.5014 -6.1616 18 6 1.7783 0.3041 -7.3652 19 6 0.5774 0.0958 -8.0213 20 6 0.3605 0.8977 -9.0649 21 16 1.7308 1.9809 -9.2712 22 6 2.5415 1.2680 -7.8825 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.6055 -1.7198 1.2950 27 1 3.1264 -0.7995 1.2055 28 1 2.9229 -1.8423 4.7316 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 0.6528 0.1793 -2.4753 32 1 3.2116 -0.7050 -3.6406 33 1 1.6904 -1.6248 -3.7297 34 1 0.6156 0.2693 -4.9161 35 1 2.1371 1.1886 -4.8265 36 1 3.2817 -0.5800 -6.1350 37 1 1.7598 -1.4988 -6.2241 38 1 -0.1319 -0.6566 -7.7095 39 1 -0.5197 0.8812 -9.6904 40 1 3.5094 1.5651 -7.5065 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207837294.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:56 Heat of formation + Delta-G solvation = -16.438978 kcal Electronic energy + Delta-G solvation = -17070.749228 eV Core-core repulsion = 14396.085572 eV Total energy + Delta-G solvation = -2674.663656 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45661 -38.46118 -36.16390 -34.47091 -32.88773 -30.24548 -28.85094 -27.54770 -26.10549 -24.31091 -23.33408 -22.29801 -20.57974 -19.56356 -18.52696 -18.45793 -17.02470 -16.63048 -16.37248 -15.67643 -15.35312 -15.29645 -14.46653 -14.39637 -14.06717 -13.92430 -13.79146 -13.48312 -13.31626 -13.12558 -12.77923 -12.75051 -12.58975 -12.46944 -12.26777 -12.16751 -11.87580 -11.62470 -11.53201 -11.42628 -11.05924 -10.88940 -10.53692 -9.67604 -9.31731 -9.24471 -8.17211 -6.26196 0.13610 0.81168 1.12291 1.40286 1.40760 1.53876 1.81000 2.42458 3.16181 3.28865 3.97312 4.01015 4.18250 4.21391 4.29177 4.42151 4.48327 4.51177 4.57356 4.68046 4.74313 4.79378 4.83430 4.89051 4.96211 5.04497 5.14135 5.23549 5.24791 5.38076 5.40666 5.49082 5.55840 5.58166 5.65149 5.81027 5.90012 6.12807 6.32361 6.54675 6.90007 7.42006 8.95113 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.053495 B = 0.002327 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.288243 B =12031.514412 C =12140.852008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.694 5.694 15 C 0.058 3.942 16 C -0.098 4.098 17 C -0.055 4.055 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.214 4.214 21 S 0.082 5.918 22 C -0.224 4.224 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.041 0.959 26 H -0.010 1.010 27 H -0.014 1.014 28 H 0.262 0.738 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.344 0.656 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.152 0.848 39 H 0.183 0.817 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.999 3.815 -27.057 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.326 5.326 15 C -0.071 4.071 16 C -0.136 4.136 17 C -0.095 4.095 18 C -0.119 4.119 19 C -0.173 4.173 20 C -0.349 4.349 21 S 0.345 5.655 22 C -0.359 4.359 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.009 0.991 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.169 0.831 39 H 0.200 0.800 40 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.037 5.306 -27.964 28.624 hybrid contribution -0.822 -1.697 2.067 2.798 sum -3.859 3.609 -25.897 26.431 Atomic orbital electron populations 1.21649 0.94937 1.00685 1.01113 1.21026 0.96281 0.98944 0.93282 0.92631 1.19020 0.94222 0.94622 0.92747 1.21669 1.34304 1.08503 0.92052 0.92104 1.25971 0.95319 0.96139 1.02712 1.70107 1.40372 1.22979 1.24217 0.85439 0.78058 0.78875 0.78931 1.18581 1.20484 1.20574 1.21833 0.99526 0.94243 0.89628 1.60506 1.20113 1.50525 1.01499 1.22018 1.00499 0.95527 0.89100 1.21403 1.01112 0.99156 0.91941 1.20259 1.01647 0.97869 0.89727 1.19122 0.95031 0.98568 0.99171 1.20351 0.98133 1.02205 0.96656 1.25905 1.03601 1.01348 1.04092 1.84268 1.12601 1.38684 1.29921 1.25711 1.05598 1.02955 1.01624 0.93609 0.91473 0.94031 0.99142 0.99538 0.92949 0.95862 0.92576 0.83701 0.91461 0.94922 0.91836 0.91941 0.90452 0.90094 0.83053 0.80000 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.77 71.98 0.63 -4.00 16 2 C -0.08 -3.17 2.55 -10.79 -0.03 -3.20 16 3 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 4 C 0.03 1.68 4.45 29.85 0.13 1.81 16 5 C -0.53 -30.14 8.41 25.60 0.22 -29.92 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -57.69 13.29 21.45 0.28 -57.41 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 C 0.08 2.69 5.14 86.30 0.44 3.13 16 14 N -0.69 -19.63 6.50 -513.88 -3.34 -22.97 16 15 C 0.06 1.30 5.68 86.30 0.49 1.79 16 16 C -0.10 -1.81 5.46 30.59 0.17 -1.65 16 17 C -0.05 -0.85 5.47 29.85 0.16 -0.69 16 18 C -0.11 -1.77 5.06 -20.92 -0.11 -1.88 16 19 C -0.14 -2.19 9.98 21.21 0.21 -1.97 16 20 C -0.21 -2.99 11.23 66.72 0.75 -2.24 16 21 S 0.08 1.22 23.34 -56.49 -1.32 -0.10 16 22 C -0.22 -3.67 10.98 66.72 0.73 -2.94 16 23 H 0.04 1.82 6.95 -2.39 -0.02 1.80 16 24 H 0.07 1.97 6.68 -2.39 -0.02 1.96 16 25 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.34 8.92 6.98 -89.69 -0.63 8.29 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -64.64 340.43 2.29 -62.35 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.37 Total: 12.77 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 4.27 Total: -41.55 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.06 Total: -80.38 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -64.64 2.29 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207837294.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.915 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds