Wall clock time and date at job start Mon Mar 30 2020 00:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47420 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00096 * 66.04615 * 5 4 3 7 7 C 1.50691 * 109.47552 * 199.30091 * 6 5 4 8 8 H 1.07999 * 119.99849 * 355.06639 * 7 6 5 9 9 C 1.37877 * 120.00195 * 175.07114 * 7 6 5 10 10 N 1.31514 * 120.00211 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00127 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47260 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47037 * 119.99612 * 11 9 7 14 14 H 1.48498 * 109.47317 * 239.99639 * 11 9 7 15 15 C 1.46903 * 111.00066 * 190.00040 * 5 4 3 16 16 C 1.52994 * 109.47203 * 75.77099 * 15 5 4 17 17 C 1.50700 * 109.47294 * 174.86407 * 16 15 5 18 18 C 1.33391 * 125.20208 * 89.99749 * 17 16 15 19 19 C 1.38423 * 114.92269 * 179.97438 * 18 17 16 20 20 C 1.33396 * 114.91754 * 0.02562 * 19 18 17 21 21 S 1.75881 * 125.20453 * 269.69340 * 17 16 15 22 22 H 1.09003 * 109.47443 * 60.00174 * 1 2 3 23 23 H 1.09001 * 109.47743 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47296 * 299.99867 * 1 2 3 25 25 H 1.09000 * 109.46833 * 240.00020 * 2 1 3 26 26 H 1.08994 * 109.46969 * 120.00138 * 2 1 3 27 27 H 1.08997 * 109.46848 * 59.99469 * 3 2 1 28 28 H 1.09003 * 109.46671 * 300.00299 * 3 2 1 29 29 H 1.09005 * 109.46819 * 59.99529 * 4 3 2 30 30 H 1.09000 * 109.46941 * 300.00602 * 4 3 2 31 31 H 1.08999 * 109.47066 * 319.30491 * 6 5 4 32 32 H 1.09008 * 109.46576 * 79.29793 * 6 5 4 33 33 H 0.96996 * 120.00473 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46801 * 315.77002 * 15 5 4 35 35 H 1.09004 * 109.47128 * 195.76962 * 15 5 4 36 36 H 1.09002 * 109.46866 * 54.86493 * 16 15 5 37 37 H 1.09004 * 109.47186 * 294.86460 * 16 15 5 38 38 H 1.08007 * 122.53774 * 359.96294 * 18 17 16 39 39 H 1.07993 * 122.54158 * 180.02562 * 19 18 17 40 40 H 1.08002 * 125.20062 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7097 3.5101 1.2528 7 6 3.7869 5.0014 1.0508 8 1 4.1442 5.4015 0.1135 9 6 3.4014 5.8550 2.0626 10 7 2.9659 5.3678 3.2038 11 14 3.4978 7.7037 1.8124 12 1 4.0176 7.9927 0.4517 13 1 2.1436 8.2946 1.9612 14 1 4.4093 8.2935 2.8255 15 6 5.5086 2.8734 -0.2376 16 6 5.7910 2.6156 -1.7190 17 6 7.2640 2.7871 -1.9869 18 6 8.1777 1.8183 -1.9089 19 6 9.4722 2.2125 -2.2002 20 6 9.6099 3.5017 -2.5143 21 16 8.0404 4.2935 -2.4575 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9284 -0.8891 30 1 3.9329 0.9287 0.8908 31 1 2.6964 3.2350 1.5456 32 1 4.4075 3.2128 2.0357 33 1 2.6943 5.9683 3.9155 34 1 5.9999 2.1088 0.3644 35 1 5.8913 3.8556 0.0397 36 1 5.2266 3.3243 -2.3250 37 1 5.4911 1.5993 -1.9746 38 1 7.9264 0.8032 -1.6387 39 1 10.3073 1.5283 -2.1752 40 1 10.5418 3.9842 -2.7695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209225197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:37 Heat of formation + Delta-G solvation = 12.926542 kcal Electronic energy + Delta-G solvation = -17944.936564 eV Core-core repulsion = 15271.546292 eV Total energy + Delta-G solvation = -2673.390272 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.04852 -37.11197 -34.41102 -32.83410 -31.78409 -28.72103 -27.79753 -25.92639 -23.76339 -22.92541 -21.97289 -20.69664 -19.63575 -19.03642 -16.93959 -16.38477 -15.43921 -15.07281 -14.64850 -14.52206 -14.24634 -13.55925 -13.27944 -13.09433 -12.69734 -12.53061 -12.38151 -12.07898 -12.01434 -11.80449 -11.48746 -11.10707 -11.09411 -10.77196 -10.68097 -10.65439 -10.49840 -10.44328 -10.13456 -10.04039 -9.56877 -9.16882 -8.47832 -8.36026 -8.31730 -7.23988 -5.99426 -3.99882 1.15946 1.80645 2.19090 2.87594 3.32947 3.40442 3.45724 4.44759 4.74005 5.11400 5.16021 5.28569 5.35403 5.40910 5.46764 5.51687 5.65911 5.67655 5.77381 5.83431 6.00537 6.05267 6.10581 6.14974 6.17684 6.24569 6.31213 6.39567 6.45184 6.45786 6.67037 6.71687 6.76270 6.88294 7.28157 7.37971 7.85839 8.15539 8.23589 8.58046 9.07905 9.63981 11.11256 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.006412 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.305931 B = 4365.980834 C = 6661.262473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.057 3.943 5 N -0.537 5.537 6 C 0.189 3.811 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.070 3.930 16 C -0.047 4.047 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.131 4.131 20 C -0.231 4.231 21 S 0.104 5.896 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.040 0.960 32 H -0.013 1.013 33 H 0.260 0.740 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.644 -8.660 -10.106 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.072 4.072 5 N -0.261 5.261 6 C 0.064 3.936 7 C -0.540 4.540 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.059 4.059 16 C -0.087 4.087 17 C -0.268 4.268 18 C -0.186 4.186 19 C -0.162 4.162 20 C -0.366 4.366 21 S 0.367 5.633 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.005 0.995 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.857 -6.865 -10.580 13.906 hybrid contribution 1.051 -0.836 0.992 1.670 sum 6.908 -7.701 -9.587 14.105 Atomic orbital electron populations 1.21754 0.96212 1.00804 1.01993 1.21495 0.95601 0.97673 1.01206 1.21634 0.95171 0.95310 1.03332 1.22056 0.95375 0.90925 0.98827 1.62096 1.11442 1.12827 1.39717 1.19818 0.96295 0.93732 0.83709 1.21202 1.42357 0.90580 0.99842 0.91936 1.24973 0.95530 0.98937 0.95190 1.69962 1.44630 1.34796 1.04613 0.86500 0.77616 0.85494 0.78207 1.19611 1.21052 1.21159 1.21938 0.89654 1.01678 0.92602 1.20250 0.87174 1.02567 0.98732 1.24683 1.00513 0.95711 1.05912 1.20085 0.92200 1.00481 1.05815 1.20106 0.97643 0.95590 1.02890 1.25570 1.01300 0.98387 1.11378 1.84485 0.99107 1.12556 1.67154 0.92843 0.93402 0.92651 0.92639 0.92551 0.91047 0.91542 0.92471 0.96261 0.94225 0.99550 0.93060 0.95972 0.89896 0.89939 0.90735 0.84664 0.84825 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.80 16 3 C -0.12 -1.97 5.18 -26.73 -0.14 -2.11 16 4 C 0.06 1.01 4.78 -3.83 -0.02 0.99 16 5 N -0.54 -11.36 4.36 -236.08 -1.03 -12.38 16 6 C 0.19 4.89 4.59 -4.98 -0.02 4.86 16 7 C -0.50 -14.06 8.51 -34.44 -0.29 -14.35 16 8 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 11 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 C 0.07 1.35 4.79 -3.83 -0.02 1.33 16 16 C -0.05 -0.75 5.74 -27.89 -0.16 -0.91 16 17 C -0.15 -2.21 5.76 -36.00 -0.21 -2.42 16 18 C -0.16 -2.07 10.05 -41.21 -0.41 -2.48 16 19 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 20 C -0.23 -2.78 11.23 29.04 0.33 -2.45 16 21 S 0.10 1.45 23.33 -107.50 -2.51 -1.05 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.39 6.25 -51.93 -0.32 1.07 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.04 1.08 5.88 -51.93 -0.31 0.78 16 32 H -0.01 -0.37 8.01 -51.92 -0.42 -0.79 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.02 0.42 8.00 -51.93 -0.42 0.00 16 35 H 0.08 1.79 7.23 -51.93 -0.38 1.42 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.06 6.96 -51.93 -0.36 0.70 16 38 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 338.34 15.07 5.10 5.10 Total: -1.00 -29.45 338.34 -10.71 -40.16 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.74 Total: -1.21 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -1.25 Total: -21.36 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.29 Total: -38.43 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.51 Total: -1.05 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.45 -10.71 -40.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209225197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.089 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds