Wall clock time and date at job start Mon Mar 30 2020 00:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47420 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00096 * 66.04615 * 5 4 3 7 7 C 1.50691 * 109.47552 * 199.30091 * 6 5 4 8 8 H 1.07999 * 119.99849 * 355.06639 * 7 6 5 9 9 C 1.37877 * 120.00195 * 175.07114 * 7 6 5 10 10 N 1.31514 * 120.00211 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00127 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47260 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47037 * 119.99612 * 11 9 7 14 14 H 1.48498 * 109.47317 * 239.99639 * 11 9 7 15 15 C 1.46903 * 111.00066 * 190.00040 * 5 4 3 16 16 C 1.52994 * 109.47203 * 75.77099 * 15 5 4 17 17 C 1.50700 * 109.47294 * 174.86407 * 16 15 5 18 18 C 1.33391 * 125.20208 * 89.99749 * 17 16 15 19 19 C 1.38423 * 114.92269 * 179.97438 * 18 17 16 20 20 C 1.33396 * 114.91754 * 0.02562 * 19 18 17 21 21 S 1.75881 * 125.20453 * 269.69340 * 17 16 15 22 22 H 1.09003 * 109.47443 * 60.00174 * 1 2 3 23 23 H 1.09001 * 109.47743 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47296 * 299.99867 * 1 2 3 25 25 H 1.09000 * 109.46833 * 240.00020 * 2 1 3 26 26 H 1.08994 * 109.46969 * 120.00138 * 2 1 3 27 27 H 1.08997 * 109.46848 * 59.99469 * 3 2 1 28 28 H 1.09003 * 109.46671 * 300.00299 * 3 2 1 29 29 H 1.09005 * 109.46819 * 59.99529 * 4 3 2 30 30 H 1.09000 * 109.46941 * 300.00602 * 4 3 2 31 31 H 1.08999 * 109.47066 * 319.30491 * 6 5 4 32 32 H 1.09008 * 109.46576 * 79.29793 * 6 5 4 33 33 H 0.96996 * 120.00473 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46801 * 315.77002 * 15 5 4 35 35 H 1.09004 * 109.47128 * 195.76962 * 15 5 4 36 36 H 1.09002 * 109.46866 * 54.86493 * 16 15 5 37 37 H 1.09004 * 109.47186 * 294.86460 * 16 15 5 38 38 H 1.08007 * 122.53774 * 359.96294 * 18 17 16 39 39 H 1.07993 * 122.54158 * 180.02562 * 19 18 17 40 40 H 1.08002 * 125.20062 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7097 3.5101 1.2528 7 6 3.7869 5.0014 1.0508 8 1 4.1442 5.4015 0.1135 9 6 3.4014 5.8550 2.0626 10 7 2.9659 5.3678 3.2038 11 14 3.4978 7.7037 1.8124 12 1 4.0176 7.9927 0.4517 13 1 2.1436 8.2946 1.9612 14 1 4.4093 8.2935 2.8255 15 6 5.5086 2.8734 -0.2376 16 6 5.7910 2.6156 -1.7190 17 6 7.2640 2.7871 -1.9869 18 6 8.1777 1.8183 -1.9089 19 6 9.4722 2.2125 -2.2002 20 6 9.6099 3.5017 -2.5143 21 16 8.0404 4.2935 -2.4575 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9284 -0.8891 30 1 3.9329 0.9287 0.8908 31 1 2.6964 3.2350 1.5456 32 1 4.4075 3.2128 2.0357 33 1 2.6943 5.9683 3.9155 34 1 5.9999 2.1088 0.3644 35 1 5.8913 3.8556 0.0397 36 1 5.2266 3.3243 -2.3250 37 1 5.4911 1.5993 -1.9746 38 1 7.9264 0.8032 -1.6387 39 1 10.3073 1.5283 -2.1752 40 1 10.5418 3.9842 -2.7695 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209225197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:36 Heat of formation + Delta-G solvation = -2.778634 kcal Electronic energy + Delta-G solvation = -17945.617591 eV Core-core repulsion = 15271.546292 eV Total energy + Delta-G solvation = -2674.071299 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.36839 -38.43085 -35.70558 -34.82141 -33.21080 -30.18454 -29.33886 -27.46955 -25.06848 -24.59907 -23.29635 -21.95350 -21.27461 -20.05193 -18.62605 -17.96047 -16.85148 -16.34575 -16.30480 -16.07532 -15.76504 -15.10184 -14.55511 -14.29795 -14.03821 -13.87238 -13.76419 -13.52716 -13.31437 -13.10771 -12.92129 -12.83429 -12.56464 -12.44475 -12.28305 -12.13089 -11.86295 -11.63940 -11.60483 -11.51028 -11.22522 -11.16851 -10.58317 -9.51718 -9.38574 -9.00609 -8.19375 -6.28322 0.13447 0.76978 1.18607 1.38710 1.39250 1.52918 1.89468 2.39890 3.10910 3.24464 3.96941 4.03453 4.11989 4.17704 4.29398 4.32670 4.43798 4.53015 4.57454 4.61557 4.72473 4.79286 4.83596 4.93845 4.99434 5.02703 5.09682 5.14984 5.23458 5.29664 5.31448 5.33503 5.43944 5.46408 5.54655 5.67322 5.68030 6.10111 6.39497 6.66420 6.87078 7.40587 8.91357 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.006412 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.305931 B = 4365.980834 C = 6661.262473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.112 4.112 4 C 0.057 3.943 5 N -0.543 5.543 6 C 0.206 3.794 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.279 1.279 15 C 0.076 3.924 16 C -0.031 4.031 17 C -0.178 4.178 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.217 4.217 21 S 0.060 5.940 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.014 0.986 31 H 0.019 0.981 32 H -0.046 1.046 33 H 0.264 0.736 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.153 0.847 39 H 0.165 0.835 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -9.647 -11.669 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.150 4.150 4 C -0.071 4.071 5 N -0.267 5.267 6 C 0.080 3.920 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.189 1.189 13 H -0.202 1.202 14 H -0.204 1.204 15 C -0.053 4.053 16 C -0.070 4.070 17 C -0.296 4.296 18 C -0.176 4.176 19 C -0.168 4.168 20 C -0.352 4.352 21 S 0.323 5.677 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.032 0.968 31 H 0.037 0.963 32 H -0.028 1.028 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.170 0.830 39 H 0.183 0.817 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.022 -7.867 -12.160 16.095 hybrid contribution 0.765 -0.596 1.476 1.766 sum 7.787 -8.462 -10.684 15.697 Atomic orbital electron populations 1.21751 0.95286 1.02151 1.01513 1.21448 0.96401 0.95049 1.02341 1.21580 0.94574 0.97539 1.01280 1.22186 0.95939 0.88993 0.99994 1.62057 1.12991 1.14909 1.36733 1.19445 0.94229 0.93454 0.84919 1.21473 1.42294 0.91938 0.99711 0.92455 1.25848 0.95004 1.03882 0.94800 1.70080 1.45393 1.36604 1.05469 0.85439 0.77940 0.79508 0.78422 1.18914 1.20216 1.20428 1.21878 0.88137 0.99904 0.95370 1.19997 0.88290 1.03299 0.95460 1.24567 1.00109 0.96319 1.08617 1.20430 0.92483 1.00878 1.03847 1.20448 0.97980 0.96061 1.02310 1.25923 1.00839 0.98286 1.10145 1.84622 1.01444 1.13622 1.68020 0.92536 0.91105 0.94008 0.90383 0.92415 0.94656 0.91972 0.89236 0.96791 0.96323 1.02840 0.92765 0.95773 0.93179 0.91107 0.88711 0.82955 0.81727 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.91 71.98 0.71 -2.77 16 2 C -0.11 -2.93 5.93 30.59 0.18 -2.74 16 3 C -0.11 -3.81 5.18 30.59 0.16 -3.65 16 4 C 0.06 2.01 4.78 86.30 0.41 2.42 16 5 N -0.54 -23.60 4.36 -900.81 -3.92 -27.53 16 6 C 0.21 11.17 4.59 85.55 0.39 11.56 16 7 C -0.52 -29.99 8.51 25.60 0.22 -29.77 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.00 0.14 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 11 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 C 0.08 2.97 4.79 86.30 0.41 3.38 16 16 C -0.03 -0.96 5.74 29.85 0.17 -0.79 16 17 C -0.18 -5.08 5.76 24.59 0.14 -4.94 16 18 C -0.15 -3.52 10.05 21.22 0.21 -3.30 16 19 C -0.14 -2.86 10.18 21.22 0.22 -2.65 16 20 C -0.22 -4.67 11.23 66.72 0.75 -3.92 16 21 S 0.06 1.65 23.33 -56.49 -1.32 0.34 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.44 6.25 -2.39 -0.01 1.43 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.09 2.60 6.72 -2.38 -0.02 2.58 16 30 H 0.01 0.51 8.12 -2.39 -0.02 0.49 16 31 H 0.02 1.09 5.88 -2.39 -0.01 1.07 16 32 H -0.05 -2.74 8.01 -2.38 -0.02 -2.76 16 33 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.02 0.92 8.00 -2.38 -0.02 0.90 16 35 H 0.05 2.26 7.23 -2.38 -0.02 2.25 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.09 2.49 6.96 -2.38 -0.02 2.48 16 38 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.65 338.34 2.50 -63.15 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.99 Total: 10.08 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 4.44 Total: -36.57 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -3.64 Total: -84.46 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -1.32 Total: 0.34 kcal Total: -65.65 2.50 -63.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209225197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.371 kcal (2) G-P(sol) polarization free energy of solvation -65.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds