Wall clock time and date at job start Mon Mar 30 2020 00:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 109.46677 * 2 1 4 4 C 1.46895 * 109.47615 * 239.99910 * 2 1 3 5 5 C 1.46898 * 109.47021 * 119.99584 * 2 1 3 6 6 C 1.53001 * 109.47128 * 65.22540 * 5 2 1 7 7 H 1.09001 * 109.47042 * 54.79618 * 6 5 2 8 8 C 1.50698 * 109.47389 * 174.79796 * 6 5 2 9 9 H 1.07995 * 119.99928 * 120.00012 * 8 6 5 10 10 C 1.37879 * 119.99900 * 300.00027 * 8 6 5 11 11 N 1.31514 * 120.00060 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 119.99796 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47323 * 60.00093 * 12 10 8 14 14 H 1.48506 * 109.47213 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47425 * 300.00005 * 12 10 8 16 16 O 1.42902 * 109.47302 * 294.79977 * 6 5 2 17 17 C 1.35765 * 117.00507 * 154.37382 * 16 6 5 18 18 C 1.38811 * 119.68028 * 0.99992 * 17 16 6 19 19 C 1.38453 * 119.12912 * 180.02562 * 18 17 16 20 20 C 1.38772 * 118.49714 * 359.97438 * 19 18 17 21 21 C 1.38099 * 119.28871 * 0.02562 * 20 19 18 22 22 N 1.32016 * 120.81756 * 359.97438 * 21 20 19 23 23 O 1.41601 * 119.18350 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47607 * 292.06254 * 1 2 3 25 25 H 1.08996 * 109.47426 * 52.06839 * 1 2 3 26 26 H 1.09004 * 109.46818 * 172.06262 * 1 2 3 27 27 H 1.09005 * 109.46704 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47357 * 299.99804 * 3 2 1 29 29 H 1.08998 * 109.47169 * 60.00406 * 3 2 1 30 30 H 1.09004 * 109.47093 * 309.12805 * 4 2 1 31 31 H 1.09006 * 109.46876 * 69.11925 * 4 2 1 32 32 H 1.08996 * 109.47440 * 189.11930 * 4 2 1 33 33 H 1.08999 * 109.47230 * 305.22530 * 5 2 1 34 34 H 1.09000 * 109.47275 * 185.22290 * 5 2 1 35 35 H 0.96996 * 120.00083 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.43489 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.74972 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.35871 * 180.26950 * 20 19 18 39 39 H 1.08003 * 119.59421 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9585 1.3851 0.0000 4 6 1.9587 -0.6925 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.5587 -2.1678 1.1356 7 1 1.9184 -2.6017 0.2026 8 6 2.1686 -2.9045 2.3002 9 1 1.5328 -3.4070 3.0141 10 6 3.5384 -2.9371 2.4543 11 7 4.3126 -2.3257 1.5846 12 14 4.2944 -3.8497 3.8982 13 1 3.9061 -5.2818 3.8368 14 1 5.7737 -3.7353 3.8363 15 1 3.8044 -3.2581 5.1691 16 8 0.1352 -2.2786 1.1948 17 6 -0.4211 -3.3829 0.6342 18 6 0.3952 -4.3472 0.0591 19 6 -0.1842 -5.4686 -0.5097 20 6 -1.5666 -5.5858 -0.4821 21 6 -2.3176 -4.5877 0.1070 22 7 -1.7362 -3.5298 0.6414 23 8 -2.5397 -2.5274 1.2369 24 1 -0.3634 0.3860 0.9523 25 1 -0.3634 0.6317 -0.8105 26 1 -0.3633 -1.0179 -0.1419 27 1 3.0486 1.3851 0.0005 28 1 1.5952 1.8988 -0.8899 29 1 1.5952 1.8988 0.8900 30 1 1.4685 -1.6623 -1.2846 31 1 1.7345 -0.0932 -2.0819 32 1 3.0365 -0.8357 -1.1216 33 1 1.5209 -0.2354 2.0870 34 1 3.0446 -0.6121 1.2475 35 1 5.2762 -2.3483 1.6932 36 1 1.4682 -4.2238 0.0547 37 1 0.4261 -6.2352 -0.9640 38 1 -2.0499 -6.4502 -0.9131 39 1 -3.3939 -4.6741 0.1317 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226795982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:41 Heat of formation + Delta-G solvation = 136.191369 kcal Electronic energy + Delta-G solvation = -22019.615165 eV Core-core repulsion = 18857.047014 eV Total energy + Delta-G solvation = -3162.568150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.51062 -42.25065 -39.34899 -35.61045 -35.04932 -32.24763 -31.28938 -30.45076 -30.38028 -30.21572 -28.04842 -25.73145 -25.01896 -24.45889 -22.71129 -19.94240 -19.37131 -18.70740 -18.43815 -18.15156 -17.98184 -17.47195 -16.86132 -16.44834 -15.94051 -15.75367 -15.10463 -14.99515 -14.95073 -14.62516 -14.16352 -14.01933 -14.00432 -13.82241 -13.58566 -13.37645 -13.10432 -13.06764 -12.47140 -12.26386 -12.11416 -12.04006 -11.69441 -11.17953 -10.31055 -9.99355 -9.93497 -9.13143 -8.09230 -6.22575 -0.32203 -0.20550 0.28650 1.10446 1.99373 2.12810 2.15281 2.21351 2.27557 2.32040 2.32722 2.55111 2.85107 3.19044 3.21867 3.28344 3.34151 3.41408 3.55328 3.62626 3.64992 3.68772 3.70305 3.77209 3.81280 3.89482 3.99626 4.05474 4.24102 4.30516 4.47222 4.67239 4.87636 4.90361 4.97781 5.47150 5.79002 5.99739 6.07831 6.52480 6.98861 7.58220 8.96557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.272 5.272 3 C -0.041 4.041 4 C -0.041 4.041 5 C -0.006 4.006 6 C 0.198 3.802 7 H 0.061 0.939 8 C -0.553 4.553 9 H 0.085 0.915 10 C 0.080 3.920 11 N -0.893 5.893 12 Si 0.916 3.084 13 H -0.266 1.266 14 H -0.277 1.277 15 H -0.267 1.267 16 O -0.297 6.297 17 C 0.319 3.681 18 C -0.193 4.193 19 C -0.043 4.043 20 C -0.166 4.166 21 C 0.108 3.892 22 N -0.144 5.144 23 O -0.559 6.559 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.110 0.890 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.172 0.828 35 H 0.286 0.714 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 5.692 -11.992 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.069 4.931 3 C -0.182 4.182 4 C -0.182 4.182 5 C -0.125 4.125 6 C 0.143 3.857 7 H 0.078 0.922 8 C -0.590 4.590 9 H 0.103 0.897 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.741 3.259 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.191 1.191 16 O -0.206 6.206 17 C 0.149 3.851 18 C -0.212 4.212 19 C -0.069 4.069 20 C -0.185 4.185 21 C -0.036 4.036 22 N 0.162 4.838 23 O -0.610 6.610 24 H 0.137 0.863 25 H 0.122 0.878 26 H 0.145 0.855 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.189 0.811 35 H 0.096 0.904 36 H 0.195 0.805 37 H 0.173 0.827 38 H 0.181 0.819 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.848 6.279 -11.710 13.314 hybrid contribution 0.470 -0.412 0.904 1.099 sum -0.378 5.867 -10.806 12.302 Atomic orbital electron populations 1.24351 0.76329 1.09717 1.08022 1.46338 1.15259 1.14772 1.16707 1.24023 1.05386 0.80768 1.08047 1.24043 1.06224 1.01280 0.86694 1.25056 1.07759 0.94923 0.84783 1.20828 0.72505 0.90882 1.01470 0.92227 1.21339 0.92280 1.34357 1.11015 0.89739 1.24961 0.96359 0.94198 0.97125 1.69468 1.06843 1.41323 1.35240 0.86132 0.78320 0.80528 0.80880 1.19066 1.20132 1.19115 1.86097 1.26268 1.35637 1.72610 1.18970 0.83660 0.89512 0.92923 1.22026 1.02748 0.94275 1.02183 1.21730 0.94808 0.96383 0.93935 1.21753 0.94278 1.00093 1.02379 1.22557 1.01553 0.85408 0.94091 1.42831 1.03757 1.13798 1.23372 1.97641 1.57520 1.35216 1.70625 0.86312 0.87799 0.85548 0.86366 0.87097 0.86687 0.87245 0.87208 0.85400 0.86466 0.81131 0.90386 0.80490 0.82724 0.81900 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.30 7.22 60.06 0.43 0.74 16 2 N -0.27 2.33 0.05 -395.63 -0.02 2.31 16 3 C -0.04 0.46 7.98 60.07 0.48 0.94 16 4 C -0.04 0.39 7.38 60.06 0.44 0.83 16 5 C -0.01 0.02 3.67 -3.82 -0.01 0.01 16 6 C 0.20 0.17 1.17 -27.88 -0.03 0.13 16 7 H 0.06 -0.05 3.99 -51.93 -0.21 -0.25 16 8 C -0.55 -3.37 8.26 -34.44 -0.28 -3.65 16 9 H 0.08 0.75 7.81 -52.49 -0.41 0.34 16 10 C 0.08 0.55 5.29 -17.82 -0.09 0.46 16 11 N -0.89 -5.25 11.29 55.43 0.63 -4.62 16 12 Si 0.92 6.90 29.54 -169.99 -5.02 1.88 16 13 H -0.27 -2.24 7.11 56.52 0.40 -1.84 16 14 H -0.28 -2.28 7.11 56.52 0.40 -1.88 16 15 H -0.27 -2.29 7.11 56.52 0.40 -1.89 16 16 O -0.30 -0.73 6.29 -36.55 -0.23 -0.96 16 17 C 0.32 0.81 6.91 -17.13 -0.12 0.69 16 18 C -0.19 0.08 8.82 -39.29 -0.35 -0.27 16 19 C -0.04 0.12 10.17 -39.30 -0.40 -0.28 16 20 C -0.17 0.47 10.11 -39.43 -0.40 0.07 16 21 C 0.11 0.05 10.69 -17.52 -0.19 -0.13 16 22 N -0.14 -0.66 3.59 -13.29 -0.05 -0.71 16 23 O -0.56 -6.05 19.72 -29.01 -0.57 -6.62 16 24 H 0.12 -0.70 7.96 -51.93 -0.41 -1.11 16 25 H 0.10 -1.03 8.03 -51.93 -0.42 -1.45 16 26 H 0.13 -0.47 4.89 -51.93 -0.25 -0.72 16 27 H 0.12 -1.36 8.11 -51.93 -0.42 -1.78 16 28 H 0.11 -1.48 8.02 -51.93 -0.42 -1.90 16 29 H 0.11 -1.32 8.14 -51.93 -0.42 -1.74 16 30 H 0.11 -0.91 6.29 -51.93 -0.33 -1.24 16 31 H 0.11 -1.35 8.01 -51.93 -0.42 -1.76 16 32 H 0.13 -1.13 8.06 -51.93 -0.42 -1.54 16 33 H 0.12 -0.32 7.98 -51.93 -0.41 -0.73 16 34 H 0.17 -0.32 5.89 -51.93 -0.31 -0.63 16 35 H 0.29 1.90 8.31 -40.82 -0.34 1.56 16 36 H 0.18 -0.12 5.73 -52.49 -0.30 -0.42 16 37 H 0.16 -0.85 8.06 -52.48 -0.42 -1.27 16 38 H 0.16 -0.98 8.06 -52.48 -0.42 -1.41 16 39 H 0.19 -0.24 8.06 -52.48 -0.42 -0.67 16 LS Contribution 310.84 15.07 4.68 4.68 Total: 0.00 -20.20 310.84 -6.65 -26.84 By element: Atomic # 1 Polarization: -16.79 SS G_CDS: -5.55 Total: -22.34 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.52 Total: -0.48 kcal Atomic # 7 Polarization: -3.58 SS G_CDS: 0.56 Total: -3.02 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.80 Total: -7.57 kcal Atomic # 14 Polarization: 6.90 SS G_CDS: -5.02 Total: 1.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -20.20 -6.65 -26.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226795982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.036 kcal (2) G-P(sol) polarization free energy of solvation -20.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds