Wall clock time and date at job start Mon Mar 30 2020 00:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 109.46677 * 2 1 4 4 C 1.46895 * 109.47615 * 239.99910 * 2 1 3 5 5 C 1.46898 * 109.47021 * 119.99584 * 2 1 3 6 6 C 1.53001 * 109.47128 * 65.22540 * 5 2 1 7 7 H 1.09001 * 109.47042 * 54.79618 * 6 5 2 8 8 C 1.50698 * 109.47389 * 174.79796 * 6 5 2 9 9 H 1.07995 * 119.99928 * 120.00012 * 8 6 5 10 10 C 1.37879 * 119.99900 * 300.00027 * 8 6 5 11 11 N 1.31514 * 120.00060 * 359.97438 * 10 8 6 12 12 Si 1.86796 * 119.99796 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47323 * 60.00093 * 12 10 8 14 14 H 1.48506 * 109.47213 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47425 * 300.00005 * 12 10 8 16 16 O 1.42902 * 109.47302 * 294.79977 * 6 5 2 17 17 C 1.35765 * 117.00507 * 154.37382 * 16 6 5 18 18 C 1.38811 * 119.68028 * 0.99992 * 17 16 6 19 19 C 1.38453 * 119.12912 * 180.02562 * 18 17 16 20 20 C 1.38772 * 118.49714 * 359.97438 * 19 18 17 21 21 C 1.38099 * 119.28871 * 0.02562 * 20 19 18 22 22 N 1.32016 * 120.81756 * 359.97438 * 21 20 19 23 23 O 1.41601 * 119.18350 * 180.02562 * 22 21 20 24 24 H 1.08995 * 109.47607 * 292.06254 * 1 2 3 25 25 H 1.08996 * 109.47426 * 52.06839 * 1 2 3 26 26 H 1.09004 * 109.46818 * 172.06262 * 1 2 3 27 27 H 1.09005 * 109.46704 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47357 * 299.99804 * 3 2 1 29 29 H 1.08998 * 109.47169 * 60.00406 * 3 2 1 30 30 H 1.09004 * 109.47093 * 309.12805 * 4 2 1 31 31 H 1.09006 * 109.46876 * 69.11925 * 4 2 1 32 32 H 1.08996 * 109.47440 * 189.11930 * 4 2 1 33 33 H 1.08999 * 109.47230 * 305.22530 * 5 2 1 34 34 H 1.09000 * 109.47275 * 185.22290 * 5 2 1 35 35 H 0.96996 * 120.00083 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.43489 * 359.97438 * 18 17 16 37 37 H 1.08003 * 120.74972 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.35871 * 180.26950 * 20 19 18 39 39 H 1.08003 * 119.59421 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9585 1.3851 0.0000 4 6 1.9587 -0.6925 -1.1993 5 6 1.9586 -0.6924 1.1995 6 6 1.5587 -2.1678 1.1356 7 1 1.9184 -2.6017 0.2026 8 6 2.1686 -2.9045 2.3002 9 1 1.5328 -3.4070 3.0141 10 6 3.5384 -2.9371 2.4543 11 7 4.3126 -2.3257 1.5846 12 14 4.2944 -3.8497 3.8982 13 1 3.9061 -5.2818 3.8368 14 1 5.7737 -3.7353 3.8363 15 1 3.8044 -3.2581 5.1691 16 8 0.1352 -2.2786 1.1948 17 6 -0.4211 -3.3829 0.6342 18 6 0.3952 -4.3472 0.0591 19 6 -0.1842 -5.4686 -0.5097 20 6 -1.5666 -5.5858 -0.4821 21 6 -2.3176 -4.5877 0.1070 22 7 -1.7362 -3.5298 0.6414 23 8 -2.5397 -2.5274 1.2369 24 1 -0.3634 0.3860 0.9523 25 1 -0.3634 0.6317 -0.8105 26 1 -0.3633 -1.0179 -0.1419 27 1 3.0486 1.3851 0.0005 28 1 1.5952 1.8988 -0.8899 29 1 1.5952 1.8988 0.8900 30 1 1.4685 -1.6623 -1.2846 31 1 1.7345 -0.0932 -2.0819 32 1 3.0365 -0.8357 -1.1216 33 1 1.5209 -0.2354 2.0870 34 1 3.0446 -0.6121 1.2475 35 1 5.2762 -2.3483 1.6932 36 1 1.4682 -4.2238 0.0547 37 1 0.4261 -6.2352 -0.9640 38 1 -2.0499 -6.4502 -0.9131 39 1 -3.3939 -4.6741 0.1317 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226795982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:40 Heat of formation + Delta-G solvation = 128.403364 kcal Electronic energy + Delta-G solvation = -22019.952878 eV Core-core repulsion = 18857.047014 eV Total energy + Delta-G solvation = -3162.905864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.12401 -42.16157 -39.36865 -35.74938 -35.33009 -32.26679 -31.31865 -30.73578 -29.65121 -29.57172 -28.07073 -25.80693 -24.84422 -24.29712 -22.59208 -20.02583 -19.38566 -18.49625 -18.16047 -17.87000 -17.66179 -17.26017 -16.97968 -16.62541 -16.17362 -15.70431 -15.10336 -14.88432 -14.39905 -14.37194 -13.70786 -13.48315 -13.37000 -13.32924 -13.24134 -13.17851 -13.11553 -12.97452 -12.81612 -12.65789 -12.47337 -12.10330 -11.97781 -11.52508 -10.81325 -10.48290 -10.10794 -9.54371 -8.60055 -6.69010 -0.29913 -0.18458 0.88691 1.07655 1.33219 1.43928 1.50186 2.18703 2.26594 2.33904 2.69719 2.93593 2.98452 3.08129 3.34623 3.67926 3.76074 3.83119 3.92690 4.01960 4.11621 4.17459 4.22220 4.32957 4.38177 4.41078 4.49590 4.56784 4.69510 4.74132 4.78396 4.84774 4.99315 5.02804 5.10806 5.35108 5.44993 5.57356 5.89129 6.23676 6.53654 7.08153 8.42930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.258 5.258 3 C -0.044 4.044 4 C -0.047 4.047 5 C 0.011 3.989 6 C 0.198 3.802 7 H 0.081 0.919 8 C -0.562 4.562 9 H 0.047 0.953 10 C 0.073 3.927 11 N -0.881 5.881 12 Si 0.928 3.072 13 H -0.281 1.281 14 H -0.282 1.282 15 H -0.287 1.287 16 O -0.311 6.311 17 C 0.304 3.696 18 C -0.196 4.196 19 C -0.022 4.022 20 C -0.142 4.142 21 C 0.093 3.907 22 N -0.172 5.172 23 O -0.632 6.632 24 H 0.101 0.899 25 H 0.142 0.858 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.165 0.835 35 H 0.282 0.718 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.208 0.792 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 5.527 -15.081 16.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.084 4.916 3 C -0.184 4.184 4 C -0.188 4.188 5 C -0.110 4.110 6 C 0.144 3.856 7 H 0.098 0.902 8 C -0.600 4.600 9 H 0.065 0.935 10 C -0.133 4.133 11 N -0.517 5.517 12 Si 0.756 3.244 13 H -0.206 1.206 14 H -0.207 1.207 15 H -0.213 1.213 16 O -0.220 6.220 17 C 0.135 3.865 18 C -0.216 4.216 19 C -0.046 4.046 20 C -0.161 4.161 21 C -0.049 4.049 22 N 0.132 4.868 23 O -0.682 6.682 24 H 0.120 0.880 25 H 0.160 0.840 26 H 0.112 0.888 27 H 0.143 0.857 28 H 0.162 0.838 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.182 0.818 35 H 0.092 0.908 36 H 0.198 0.802 37 H 0.213 0.787 38 H 0.225 0.775 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.356 6.128 -14.807 16.029 hybrid contribution 0.323 -0.528 1.794 1.898 sum -0.033 5.601 -13.013 14.167 Atomic orbital electron populations 1.24230 0.76936 1.08281 1.08615 1.46002 1.14509 1.16078 1.15019 1.24261 1.05867 0.78527 1.09761 1.24221 1.05782 1.01547 0.87232 1.24341 1.06794 0.92943 0.86957 1.20769 0.71869 0.93078 0.99911 0.90217 1.21298 0.91848 1.35045 1.11773 0.93477 1.24843 0.96712 0.94789 0.96932 1.69470 1.06291 1.41306 1.34636 0.86033 0.77765 0.79668 0.80893 1.20620 1.20695 1.21342 1.86137 1.26680 1.36010 1.73164 1.19401 0.83443 0.90258 0.93429 1.22171 1.02519 0.94516 1.02346 1.22295 0.95289 0.95624 0.91438 1.22263 0.94095 0.99656 1.00072 1.23120 1.02870 0.85108 0.93825 1.42889 1.04061 1.14295 1.25582 1.97578 1.58862 1.38070 1.73688 0.87997 0.84010 0.88808 0.85730 0.83820 0.86680 0.88596 0.83307 0.85658 0.87388 0.81823 0.90816 0.80225 0.78669 0.77542 0.78989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.53 7.22 127.69 0.92 1.45 16 2 N -0.26 4.51 0.05 ******* -0.07 4.44 16 3 C -0.04 1.07 7.98 127.69 1.02 2.09 16 4 C -0.05 0.95 7.38 127.69 0.94 1.89 16 5 C 0.01 -0.06 3.67 86.30 0.32 0.26 16 6 C 0.20 0.66 1.17 29.85 0.03 0.70 16 7 H 0.08 -0.07 3.99 -2.39 -0.01 -0.08 16 8 C -0.56 -8.24 8.26 25.60 0.21 -8.03 16 9 H 0.05 1.02 7.81 -2.91 -0.02 1.00 16 10 C 0.07 1.13 5.29 84.66 0.45 1.58 16 11 N -0.88 -10.87 11.29 21.45 0.24 -10.63 16 12 Si 0.93 16.13 29.54 68.60 2.03 18.16 16 13 H -0.28 -5.42 7.11 99.48 0.71 -4.71 16 14 H -0.28 -5.08 7.11 99.48 0.71 -4.37 16 15 H -0.29 -5.86 7.11 99.48 0.71 -5.15 16 16 O -0.31 -2.39 6.29 -74.15 -0.47 -2.86 16 17 C 0.30 2.14 6.91 84.75 0.59 2.72 16 18 C -0.20 0.18 8.82 22.46 0.20 0.38 16 19 C -0.02 0.17 10.17 22.45 0.23 0.40 16 20 C -0.14 1.15 10.11 22.36 0.23 1.37 16 21 C 0.09 0.14 10.69 84.63 0.90 1.04 16 22 N -0.17 -2.00 3.59 -308.75 -1.11 -3.11 16 23 O -0.63 -16.44 19.72 -22.01 -0.43 -16.87 16 24 H 0.10 -1.00 7.96 -2.39 -0.02 -1.02 16 25 H 0.14 -3.02 8.03 -2.39 -0.02 -3.04 16 26 H 0.09 -0.51 4.89 -2.39 -0.01 -0.52 16 27 H 0.12 -3.09 8.11 -2.38 -0.02 -3.10 16 28 H 0.14 -4.33 8.02 -2.39 -0.02 -4.35 16 29 H 0.11 -2.72 8.14 -2.39 -0.02 -2.74 16 30 H 0.10 -1.63 6.29 -2.39 -0.01 -1.65 16 31 H 0.15 -4.13 8.01 -2.38 -0.02 -4.15 16 32 H 0.12 -2.38 8.06 -2.39 -0.02 -2.40 16 33 H 0.11 -0.36 7.98 -2.39 -0.02 -0.38 16 34 H 0.16 -0.53 5.89 -2.39 -0.01 -0.55 16 35 H 0.28 3.84 8.31 -92.71 -0.77 3.07 16 36 H 0.18 -0.28 5.73 -2.91 -0.02 -0.30 16 37 H 0.20 -3.06 8.06 -2.91 -0.02 -3.09 16 38 H 0.21 -3.45 8.06 -2.91 -0.02 -3.47 16 39 H 0.19 -0.32 8.06 -2.91 -0.02 -0.34 16 Total: 0.00 -53.60 310.84 7.26 -46.34 By element: Atomic # 1 Polarization: -42.37 SS G_CDS: 1.04 Total: -41.33 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 6.04 Total: 5.87 kcal Atomic # 7 Polarization: -8.36 SS G_CDS: -0.93 Total: -9.30 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.90 Total: -19.73 kcal Atomic # 14 Polarization: 16.13 SS G_CDS: 2.03 Total: 18.16 kcal Total: -53.60 7.26 -46.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226795982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.741 kcal (2) G-P(sol) polarization free energy of solvation -53.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds