Wall clock time and date at job start Mon Mar 30 2020 00:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 109.47157 * 2 1 4 4 C 1.46898 * 109.47104 * 240.00043 * 2 1 3 5 5 C 1.46898 * 109.47576 * 120.00312 * 2 1 3 6 6 C 1.52998 * 109.47227 * 54.49249 * 5 2 1 7 7 H 1.08996 * 109.47219 * 171.68474 * 6 5 2 8 8 C 1.50704 * 109.47184 * 291.68195 * 6 5 2 9 9 H 1.08004 * 119.99923 * 117.25184 * 8 6 5 10 10 C 1.37876 * 120.00191 * 297.25955 * 8 6 5 11 11 N 1.31517 * 119.99828 * 351.17745 * 10 8 6 12 12 Si 1.86804 * 120.00399 * 171.18553 * 10 8 6 13 13 H 1.48498 * 109.46697 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47235 * 119.99216 * 12 10 8 15 15 H 1.48489 * 109.47119 * 239.99695 * 12 10 8 16 16 O 1.42902 * 109.47202 * 51.68272 * 6 5 2 17 17 C 1.35753 * 116.99848 * 88.98485 * 16 6 5 18 18 C 1.38888 * 119.62475 * 184.62372 * 17 16 6 19 19 C 1.38362 * 119.16721 * 179.77336 * 18 17 16 20 20 C 1.39229 * 118.44043 * 0.49791 * 19 18 17 21 21 O 1.35994 * 120.40659 * 179.72307 * 20 19 18 22 22 C 1.38506 * 119.18019 * 359.74580 * 20 19 18 23 23 N 1.31971 * 120.75546 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46918 * 282.89476 * 1 2 3 25 25 H 1.08996 * 109.47142 * 42.89458 * 1 2 3 26 26 H 1.08992 * 109.47025 * 162.89934 * 1 2 3 27 27 H 1.09003 * 109.47169 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47391 * 300.00081 * 3 2 1 29 29 H 1.08991 * 109.47316 * 60.00255 * 3 2 1 30 30 H 1.09003 * 109.47350 * 318.25020 * 4 2 1 31 31 H 1.09008 * 109.47173 * 78.24494 * 4 2 1 32 32 H 1.09002 * 109.47687 * 198.24721 * 4 2 1 33 33 H 1.09007 * 109.46820 * 294.49408 * 5 2 1 34 34 H 1.08998 * 109.47271 * 174.49647 * 5 2 1 35 35 H 0.96998 * 120.00205 * 1.99659 * 11 10 8 36 36 H 1.07998 * 120.41250 * 0.02562 * 18 17 16 37 37 H 1.07999 * 120.77651 * 180.24021 * 19 18 17 38 38 H 0.96700 * 114.00380 * 270.01956 * 21 20 19 39 39 H 1.07998 * 119.61957 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9588 -0.6925 1.1993 6 6 1.3389 -2.0895 1.2705 7 1 1.8110 -2.6560 2.0731 8 6 -0.1387 -1.9703 1.5417 9 1 -0.8519 -2.3303 0.8149 10 6 -0.5801 -1.4016 2.7175 11 7 0.2769 -1.1221 3.6752 12 14 -2.3956 -1.0281 2.9507 13 1 -3.1445 -1.4338 1.7342 14 1 -2.9093 -1.7811 4.1229 15 1 -2.5759 0.4279 3.1798 16 8 1.5422 -2.7647 0.0275 17 6 2.6870 -3.4822 -0.1041 18 6 2.9862 -4.0805 -1.3212 19 6 4.1580 -4.8057 -1.4462 20 6 4.9909 -4.9162 -0.3361 21 8 6.1495 -5.6242 -0.4126 22 6 4.6248 -4.2965 0.8473 23 7 3.5016 -3.6086 0.9294 24 1 -0.3633 0.2293 1.0018 25 1 -0.3633 0.7528 -0.6995 26 1 -0.3633 -0.9822 -0.3022 27 1 3.0487 1.3850 -0.0005 28 1 1.5954 1.8989 -0.8899 29 1 1.5954 1.8988 0.8899 30 1 1.3569 -1.5842 -1.3753 31 1 1.8824 -0.0273 -2.0596 32 1 2.9999 -0.9798 -1.0536 33 1 1.6782 -0.1249 2.0867 34 1 3.0443 -0.7786 1.1514 35 1 1.2232 -1.2893 3.5431 36 1 2.3147 -3.9775 -2.1608 37 1 4.4182 -5.2784 -2.3817 38 1 6.0548 -6.5593 -0.1853 39 1 5.2654 -4.3780 1.7129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228034922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:44 Heat of formation + Delta-G solvation = 73.165589 kcal Electronic energy + Delta-G solvation = -21922.921137 eV Core-core repulsion = 18757.619984 eV Total energy + Delta-G solvation = -3165.301153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.49342 -41.64479 -39.44624 -37.67146 -35.55365 -33.50489 -31.55795 -30.35594 -30.17912 -30.09177 -27.57839 -25.32138 -24.60918 -24.20653 -22.87824 -19.83621 -19.56640 -19.40773 -18.53455 -18.38480 -18.08758 -17.22747 -16.78623 -16.31665 -15.72196 -15.44589 -15.10948 -14.98527 -14.84150 -14.67788 -14.23757 -14.15201 -14.09451 -14.03508 -13.85415 -13.50311 -13.30341 -13.00664 -12.62314 -12.38010 -12.16183 -11.85138 -11.50233 -11.06132 -10.61551 -10.55137 -10.08424 -9.40411 -8.26021 -6.09932 -0.07729 0.03973 0.43581 1.96217 2.05354 2.21363 2.25093 2.40648 2.44755 2.47360 2.57059 2.92023 3.02236 3.20740 3.22353 3.32458 3.38364 3.54222 3.68112 3.72836 3.75262 3.80301 3.86115 3.92436 3.97359 4.01214 4.20152 4.29305 4.39998 4.52966 4.66397 4.80421 4.94463 5.05400 5.22804 5.74976 6.15672 6.43268 6.61768 6.75825 6.83963 7.53269 9.06741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.250 5.250 3 C -0.044 4.044 4 C -0.045 4.045 5 C -0.028 4.028 6 C 0.187 3.813 7 H 0.087 0.913 8 C -0.632 4.632 9 H 0.081 0.919 10 C 0.035 3.965 11 N -0.871 5.871 12 Si 1.062 2.938 13 H -0.278 1.278 14 H -0.273 1.273 15 H -0.276 1.276 16 O -0.301 6.301 17 C 0.307 3.693 18 C -0.183 4.183 19 C -0.066 4.066 20 C 0.015 3.985 21 O -0.491 6.491 22 C 0.122 3.878 23 N -0.519 5.519 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.141 0.859 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.275 0.725 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.392 0.608 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 4.835 -11.410 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 N 0.092 4.908 3 C -0.186 4.186 4 C -0.186 4.186 5 C -0.150 4.150 6 C 0.132 3.868 7 H 0.104 0.896 8 C -0.669 4.669 9 H 0.100 0.900 10 C -0.174 4.174 11 N -0.502 5.502 12 Si 0.886 3.114 13 H -0.203 1.203 14 H -0.198 1.198 15 H -0.202 1.202 16 O -0.208 6.208 17 C 0.128 3.872 18 C -0.203 4.203 19 C -0.092 4.092 20 C -0.032 4.032 21 O -0.299 6.299 22 C -0.035 4.035 23 N -0.243 5.243 24 H 0.145 0.855 25 H 0.103 0.897 26 H 0.159 0.841 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.160 0.840 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.248 0.752 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.889 6.418 -9.872 12.400 hybrid contribution 1.493 -1.623 -1.298 2.559 sum 5.383 4.795 -11.170 13.294 Atomic orbital electron populations 1.24735 0.75023 1.08685 1.08372 1.45736 1.16646 1.13391 1.15061 1.24069 1.04502 0.81608 1.08376 1.24442 1.04877 1.02570 0.86760 1.24836 1.01141 1.01404 0.87616 1.20591 0.98897 0.84509 0.82848 0.89564 1.21944 0.88398 1.47737 1.08776 0.90049 1.26082 1.07506 0.93419 0.90412 1.70947 1.04601 1.42805 1.31895 0.83551 0.72183 0.77925 0.77737 1.20259 1.19764 1.20164 1.86358 1.34625 1.60205 1.39658 1.20019 0.86771 0.90736 0.89677 1.21071 0.99122 1.02733 0.97423 1.21790 0.91814 0.96146 0.99405 1.19317 0.88986 1.00841 0.94081 1.84892 1.28056 1.25739 1.91255 1.22865 0.91465 0.92167 0.96969 1.67376 1.05450 1.21073 1.30419 0.85515 0.89742 0.84091 0.87380 0.86874 0.86550 0.83969 0.87858 0.88385 0.84628 0.88449 0.91325 0.83760 0.83549 0.75174 0.81835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.15 6.78 60.06 0.41 0.56 16 2 N -0.25 1.78 0.05 -395.63 -0.02 1.76 16 3 C -0.04 0.44 7.88 60.06 0.47 0.91 16 4 C -0.05 0.37 7.00 60.06 0.42 0.79 16 5 C -0.03 0.07 3.84 -3.83 -0.01 0.06 16 6 C 0.19 0.37 1.74 -27.88 -0.05 0.32 16 7 H 0.09 0.50 6.43 -51.93 -0.33 0.17 16 8 C -0.63 -3.03 5.28 -34.44 -0.18 -3.21 16 9 H 0.08 0.44 6.98 -52.48 -0.37 0.07 16 10 C 0.03 0.25 4.03 -17.82 -0.07 0.18 16 11 N -0.87 -8.19 12.91 55.43 0.72 -7.47 16 12 Si 1.06 6.45 29.38 -169.99 -4.99 1.45 16 13 H -0.28 -1.41 7.11 56.52 0.40 -1.01 16 14 H -0.27 -2.30 7.11 56.52 0.40 -1.90 16 15 H -0.28 -1.59 7.11 56.52 0.40 -1.19 16 16 O -0.30 -0.08 5.77 -18.97 -0.11 -0.19 16 17 C 0.31 0.12 6.52 -17.16 -0.11 0.00 16 18 C -0.18 0.29 10.04 -39.29 -0.39 -0.11 16 19 C -0.07 0.10 10.12 -39.17 -0.40 -0.29 16 20 C 0.01 -0.01 6.73 -39.11 -0.26 -0.27 16 21 O -0.49 0.50 13.53 -19.72 -0.27 0.24 16 22 C 0.12 0.04 11.13 -17.39 -0.19 -0.15 16 23 N -0.52 -0.86 8.62 -13.21 -0.11 -0.98 16 24 H 0.13 -0.33 5.36 -51.93 -0.28 -0.61 16 25 H 0.08 -0.74 7.85 -51.93 -0.41 -1.15 16 26 H 0.14 -0.50 4.92 -51.93 -0.26 -0.76 16 27 H 0.11 -1.18 8.14 -51.93 -0.42 -1.60 16 28 H 0.11 -1.38 7.89 -51.93 -0.41 -1.79 16 29 H 0.12 -1.11 8.11 -51.93 -0.42 -1.54 16 30 H 0.14 -0.91 5.06 -51.93 -0.26 -1.17 16 31 H 0.10 -1.13 7.83 -51.92 -0.41 -1.54 16 32 H 0.10 -0.74 7.18 -51.93 -0.37 -1.11 16 33 H 0.14 -0.10 5.99 -51.92 -0.31 -0.41 16 34 H 0.10 -0.35 7.87 -51.93 -0.41 -0.76 16 35 H 0.27 2.32 6.02 -40.82 -0.25 2.07 16 36 H 0.14 -0.54 8.06 -52.49 -0.42 -0.97 16 37 H 0.15 -0.51 8.06 -52.49 -0.42 -0.93 16 38 H 0.39 -2.06 9.06 45.56 0.41 -1.64 16 39 H 0.16 -0.18 8.06 -52.49 -0.42 -0.60 16 LS Contribution 301.52 15.07 4.54 4.54 Total: 0.00 -15.02 301.52 -5.17 -20.19 By element: Atomic # 1 Polarization: -13.79 SS G_CDS: -4.55 Total: -18.34 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -0.38 Total: -1.21 kcal Atomic # 7 Polarization: -7.27 SS G_CDS: 0.58 Total: -6.69 kcal Atomic # 8 Polarization: 0.43 SS G_CDS: -0.38 Total: 0.05 kcal Atomic # 14 Polarization: 6.45 SS G_CDS: -4.99 Total: 1.45 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -15.02 -5.17 -20.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228034922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.355 kcal (2) G-P(sol) polarization free energy of solvation -15.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds