Wall clock time and date at job start Mon Mar 30 2020 00:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 109.47157 * 2 1 4 4 C 1.46898 * 109.47104 * 240.00043 * 2 1 3 5 5 C 1.46898 * 109.47576 * 120.00312 * 2 1 3 6 6 C 1.52998 * 109.47227 * 54.49249 * 5 2 1 7 7 H 1.08996 * 109.47219 * 171.68474 * 6 5 2 8 8 C 1.50704 * 109.47184 * 291.68195 * 6 5 2 9 9 H 1.08004 * 119.99923 * 117.25184 * 8 6 5 10 10 C 1.37876 * 120.00191 * 297.25955 * 8 6 5 11 11 N 1.31517 * 119.99828 * 351.17745 * 10 8 6 12 12 Si 1.86804 * 120.00399 * 171.18553 * 10 8 6 13 13 H 1.48498 * 109.46697 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47235 * 119.99216 * 12 10 8 15 15 H 1.48489 * 109.47119 * 239.99695 * 12 10 8 16 16 O 1.42902 * 109.47202 * 51.68272 * 6 5 2 17 17 C 1.35753 * 116.99848 * 88.98485 * 16 6 5 18 18 C 1.38888 * 119.62475 * 184.62372 * 17 16 6 19 19 C 1.38362 * 119.16721 * 179.77336 * 18 17 16 20 20 C 1.39229 * 118.44043 * 0.49791 * 19 18 17 21 21 O 1.35994 * 120.40659 * 179.72307 * 20 19 18 22 22 C 1.38506 * 119.18019 * 359.74580 * 20 19 18 23 23 N 1.31971 * 120.75546 * 0.02562 * 22 20 19 24 24 H 1.09005 * 109.46918 * 282.89476 * 1 2 3 25 25 H 1.08996 * 109.47142 * 42.89458 * 1 2 3 26 26 H 1.08992 * 109.47025 * 162.89934 * 1 2 3 27 27 H 1.09003 * 109.47169 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47391 * 300.00081 * 3 2 1 29 29 H 1.08991 * 109.47316 * 60.00255 * 3 2 1 30 30 H 1.09003 * 109.47350 * 318.25020 * 4 2 1 31 31 H 1.09008 * 109.47173 * 78.24494 * 4 2 1 32 32 H 1.09002 * 109.47687 * 198.24721 * 4 2 1 33 33 H 1.09007 * 109.46820 * 294.49408 * 5 2 1 34 34 H 1.08998 * 109.47271 * 174.49647 * 5 2 1 35 35 H 0.96998 * 120.00205 * 1.99659 * 11 10 8 36 36 H 1.07998 * 120.41250 * 0.02562 * 18 17 16 37 37 H 1.07999 * 120.77651 * 180.24021 * 19 18 17 38 38 H 0.96700 * 114.00380 * 270.01956 * 21 20 19 39 39 H 1.07998 * 119.61957 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9586 -0.6925 -1.1994 5 6 1.9588 -0.6925 1.1993 6 6 1.3389 -2.0895 1.2705 7 1 1.8110 -2.6560 2.0731 8 6 -0.1387 -1.9703 1.5417 9 1 -0.8519 -2.3303 0.8149 10 6 -0.5801 -1.4016 2.7175 11 7 0.2769 -1.1221 3.6752 12 14 -2.3956 -1.0281 2.9507 13 1 -3.1445 -1.4338 1.7342 14 1 -2.9093 -1.7811 4.1229 15 1 -2.5759 0.4279 3.1798 16 8 1.5422 -2.7647 0.0275 17 6 2.6870 -3.4822 -0.1041 18 6 2.9862 -4.0805 -1.3212 19 6 4.1580 -4.8057 -1.4462 20 6 4.9909 -4.9162 -0.3361 21 8 6.1495 -5.6242 -0.4126 22 6 4.6248 -4.2965 0.8473 23 7 3.5016 -3.6086 0.9294 24 1 -0.3633 0.2293 1.0018 25 1 -0.3633 0.7528 -0.6995 26 1 -0.3633 -0.9822 -0.3022 27 1 3.0487 1.3850 -0.0005 28 1 1.5954 1.8989 -0.8899 29 1 1.5954 1.8988 0.8899 30 1 1.3569 -1.5842 -1.3753 31 1 1.8824 -0.0273 -2.0596 32 1 2.9999 -0.9798 -1.0536 33 1 1.6782 -0.1249 2.0867 34 1 3.0443 -0.7786 1.1514 35 1 1.2232 -1.2893 3.5431 36 1 2.3147 -3.9775 -2.1608 37 1 4.4182 -5.2784 -2.3817 38 1 6.0548 -6.5593 -0.1853 39 1 5.2654 -4.3780 1.7129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228034922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:43 Heat of formation + Delta-G solvation = 66.499113 kcal Electronic energy + Delta-G solvation = -21923.210217 eV Core-core repulsion = 18757.619984 eV Total energy + Delta-G solvation = -3165.590233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.12714 -41.53400 -39.36392 -37.61463 -35.87311 -33.43617 -31.60062 -30.13692 -29.78857 -29.53505 -27.53604 -25.37349 -24.45768 -24.05640 -22.79679 -19.76605 -19.69986 -19.44663 -18.26496 -17.91078 -17.76374 -17.04719 -16.69174 -16.20420 -15.80977 -15.61771 -15.20822 -14.86442 -14.58153 -14.30891 -14.14608 -13.95177 -13.86964 -13.48313 -13.40437 -13.18898 -12.97335 -12.81617 -12.64521 -12.52926 -12.41048 -11.98053 -11.87128 -10.98948 -10.96515 -10.66425 -10.45200 -9.35896 -8.80800 -6.58521 -0.00936 0.13303 0.95587 1.51957 1.63457 1.72102 1.99401 2.44128 2.55002 2.83705 2.93578 3.01881 3.09315 3.14212 3.31945 3.82404 3.86180 3.88105 4.05897 4.07716 4.13107 4.21181 4.31420 4.32898 4.50016 4.57361 4.63572 4.65479 4.70582 4.72316 4.80098 4.93446 5.08114 5.19023 5.29797 5.45969 5.88055 6.29275 6.36248 6.66891 6.82590 7.07082 8.54939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.242 5.242 3 C -0.047 4.047 4 C -0.046 4.046 5 C -0.006 4.006 6 C 0.191 3.809 7 H 0.042 0.958 8 C -0.607 4.607 9 H 0.076 0.924 10 C 0.011 3.989 11 N -0.917 5.917 12 Si 1.085 2.915 13 H -0.258 1.258 14 H -0.310 1.310 15 H -0.271 1.271 16 O -0.294 6.294 17 C 0.290 3.710 18 C -0.171 4.171 19 C -0.065 4.065 20 C 0.017 3.983 21 O -0.501 6.501 22 C 0.102 3.898 23 N -0.545 5.545 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.410 0.590 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 5.666 -14.557 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 N 0.101 4.899 3 C -0.187 4.187 4 C -0.187 4.187 5 C -0.130 4.130 6 C 0.135 3.865 7 H 0.060 0.940 8 C -0.645 4.645 9 H 0.095 0.905 10 C -0.193 4.193 11 N -0.552 5.552 12 Si 0.910 3.090 13 H -0.182 1.182 14 H -0.238 1.238 15 H -0.196 1.196 16 O -0.202 6.202 17 C 0.111 3.889 18 C -0.191 4.191 19 C -0.091 4.091 20 C -0.030 4.030 21 O -0.313 6.313 22 C -0.054 4.054 23 N -0.270 5.270 24 H 0.114 0.886 25 H 0.148 0.852 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.166 0.834 29 H 0.127 0.873 30 H 0.143 0.857 31 H 0.163 0.837 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.083 0.917 36 H 0.188 0.812 37 H 0.188 0.812 38 H 0.269 0.731 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.466 7.242 -13.057 15.585 hybrid contribution 1.353 -1.987 -0.410 2.438 sum 5.820 5.256 -13.467 15.584 Atomic orbital electron populations 1.24524 0.75879 1.08921 1.07702 1.45561 1.15910 1.14821 1.13645 1.24293 1.05378 0.79289 1.09746 1.24501 1.04028 1.02981 0.87176 1.24172 1.01220 0.98357 0.89230 1.20177 0.96948 0.86779 0.82594 0.94046 1.22041 0.90086 1.44942 1.07401 0.90546 1.26379 1.07974 0.94042 0.90910 1.70972 1.04724 1.46195 1.33347 0.83278 0.71451 0.77554 0.76708 1.18224 1.23788 1.19612 1.86372 1.35179 1.60529 1.38140 1.20248 0.86763 0.91536 0.90351 1.21318 0.99320 1.01309 0.97144 1.22062 0.91351 0.95809 0.99860 1.19386 0.89049 1.00483 0.94078 1.84838 1.27992 1.27192 1.91287 1.22990 0.91565 0.92974 0.97856 1.67326 1.06202 1.21962 1.31528 0.88585 0.85192 0.86230 0.86166 0.83433 0.87306 0.85745 0.83709 0.88741 0.86576 0.87390 0.91722 0.81240 0.81214 0.73110 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.34 6.78 127.69 0.87 1.20 16 2 N -0.24 3.62 0.05 ******* -0.07 3.55 16 3 C -0.05 1.03 7.88 127.69 1.01 2.04 16 4 C -0.05 0.83 7.00 127.69 0.89 1.73 16 5 C -0.01 0.02 3.84 86.30 0.33 0.36 16 6 C 0.19 1.16 1.74 29.85 0.05 1.22 16 7 H 0.04 0.64 6.43 -2.39 -0.02 0.63 16 8 C -0.61 -7.11 5.28 25.60 0.14 -6.98 16 9 H 0.08 0.94 6.98 -2.91 -0.02 0.92 16 10 C 0.01 0.18 4.03 84.65 0.34 0.52 16 11 N -0.92 -20.43 12.91 21.45 0.28 -20.15 16 12 Si 1.09 15.11 29.38 68.60 2.02 17.13 16 13 H -0.26 -2.65 7.11 99.48 0.71 -1.94 16 14 H -0.31 -6.23 7.11 99.48 0.71 -5.52 16 15 H -0.27 -3.42 7.11 99.48 0.71 -2.72 16 16 O -0.29 -0.42 5.77 -90.79 -0.52 -0.94 16 17 C 0.29 0.39 6.52 84.79 0.55 0.95 16 18 C -0.17 0.71 10.04 22.46 0.23 0.93 16 19 C -0.07 0.29 10.12 22.54 0.23 0.52 16 20 C 0.02 -0.02 6.73 22.57 0.15 0.13 16 21 O -0.50 1.26 13.53 -93.48 -1.26 -0.01 16 22 C 0.10 0.20 11.13 84.74 0.94 1.15 16 23 N -0.55 -2.74 8.62 -308.57 -2.66 -5.40 16 24 H 0.10 -0.40 5.36 -2.38 -0.01 -0.42 16 25 H 0.13 -2.63 7.85 -2.39 -0.02 -2.65 16 26 H 0.12 -0.83 4.92 -2.39 -0.01 -0.84 16 27 H 0.12 -2.88 8.14 -2.39 -0.02 -2.90 16 28 H 0.15 -4.20 7.89 -2.39 -0.02 -4.22 16 29 H 0.11 -2.15 8.11 -2.39 -0.02 -2.17 16 30 H 0.12 -1.72 5.06 -2.39 -0.01 -1.73 16 31 H 0.14 -3.76 7.83 -2.38 -0.02 -3.78 16 32 H 0.09 -1.56 7.18 -2.39 -0.02 -1.57 16 33 H 0.12 0.11 5.99 -2.38 -0.01 0.10 16 34 H 0.11 -0.65 7.87 -2.39 -0.02 -0.67 16 35 H 0.27 5.67 6.02 -92.71 -0.56 5.11 16 36 H 0.17 -1.64 8.06 -2.91 -0.02 -1.67 16 37 H 0.17 -1.58 8.06 -2.91 -0.02 -1.61 16 38 H 0.41 -4.50 9.06 -74.06 -0.67 -5.17 16 39 H 0.17 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -39.03 301.52 4.11 -34.92 By element: Atomic # 1 Polarization: -33.47 SS G_CDS: 0.60 Total: -32.87 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 5.73 Total: 3.76 kcal Atomic # 7 Polarization: -19.55 SS G_CDS: -2.45 Total: -22.00 kcal Atomic # 8 Polarization: 0.84 SS G_CDS: -1.79 Total: -0.95 kcal Atomic # 14 Polarization: 15.11 SS G_CDS: 2.02 Total: 17.13 kcal Total: -39.03 4.11 -34.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228034922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.424 kcal (2) G-P(sol) polarization free energy of solvation -39.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds