Wall clock time and date at job start Mon Mar 30 2020 00:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 109.47010 * 2 1 4 4 C 1.46896 * 109.47221 * 240.00254 * 2 1 3 5 5 C 1.46902 * 109.46920 * 120.00066 * 2 1 3 6 6 C 1.52994 * 109.47061 * 65.43644 * 5 2 1 7 7 H 1.09003 * 109.47288 * 314.49356 * 6 5 2 8 8 C 1.50694 * 109.47344 * 74.49998 * 6 5 2 9 9 H 1.08008 * 120.00143 * 244.75836 * 8 6 5 10 10 C 1.37878 * 120.00328 * 64.75362 * 8 6 5 11 11 N 1.31516 * 120.00296 * 192.10062 * 10 8 6 12 12 Si 1.86794 * 119.99766 * 12.10547 * 10 8 6 13 13 H 1.48506 * 109.47588 * 84.57424 * 12 10 8 14 14 H 1.48500 * 109.47429 * 204.57504 * 12 10 8 15 15 H 1.48508 * 109.47059 * 324.57233 * 12 10 8 16 16 O 1.42906 * 109.47142 * 194.49904 * 6 5 2 17 17 C 1.35907 * 116.99782 * 157.02563 * 16 6 5 18 18 C 1.38793 * 120.43983 * 176.52525 * 17 16 6 19 19 N 1.31799 * 120.80573 * 179.97438 * 18 17 16 20 20 C 1.31840 * 121.83193 * 359.97438 * 19 18 17 21 21 C 1.38743 * 120.80415 * 359.97438 * 20 19 18 22 22 O 1.35911 * 120.44586 * 180.02562 * 21 20 19 23 23 C 1.38991 * 120.44961 * 356.47976 * 17 16 6 24 24 H 1.09003 * 109.46746 * 303.21966 * 1 2 3 25 25 H 1.08997 * 109.46906 * 63.21481 * 1 2 3 26 26 H 1.08994 * 109.47337 * 183.21939 * 1 2 3 27 27 H 1.09002 * 109.46989 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47404 * 299.99669 * 3 2 1 29 29 H 1.09001 * 109.47258 * 60.00707 * 3 2 1 30 30 H 1.08998 * 109.46961 * 309.53288 * 4 2 1 31 31 H 1.08994 * 109.47404 * 69.52738 * 4 2 1 32 32 H 1.09002 * 109.47296 * 189.53424 * 4 2 1 33 33 H 1.09004 * 109.47148 * 305.43033 * 5 2 1 34 34 H 1.09004 * 109.46614 * 185.43475 * 5 2 1 35 35 H 0.97002 * 119.99786 * 180.02562 * 11 10 8 36 36 H 1.08004 * 119.59577 * 0.25246 * 18 17 16 37 37 H 1.07993 * 119.59905 * 180.02562 * 20 19 18 38 38 H 0.96701 * 114.00085 * 89.99739 * 22 21 20 39 39 H 1.08003 * 120.83315 * 0.04417 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5633 -2.1690 1.1330 7 1 0.5203 -2.2525 0.8272 8 6 2.4385 -2.8789 0.1325 9 1 2.0043 -3.2985 -0.7630 10 6 3.7936 -2.9926 0.3602 11 7 4.5914 -3.3933 -0.6056 12 14 4.4963 -2.5778 2.0405 13 1 4.3826 -3.7611 2.9306 14 1 5.9255 -2.1998 1.8998 15 1 3.7395 -1.4427 2.6270 16 8 1.7312 -2.7656 2.4206 17 6 1.0068 -3.8856 2.6809 18 6 1.1678 -4.5642 3.8809 19 7 0.4687 -5.6507 4.1410 20 6 -0.4062 -6.1368 3.2827 21 6 -0.6248 -5.5148 2.0620 22 8 -1.5288 -6.0218 1.1828 23 6 0.0940 -4.3664 1.7494 24 1 -0.3633 0.5630 0.8598 25 1 -0.3633 0.4631 -0.9174 26 1 -0.3634 -1.0260 0.0577 27 1 3.0487 1.3850 0.0005 28 1 1.5954 1.8988 -0.8899 29 1 1.5954 1.8988 0.8900 30 1 1.4631 -1.6591 -1.2886 31 1 1.7410 -0.0899 -2.0812 32 1 3.0353 -0.8422 -1.1184 33 1 1.5180 -0.2379 2.0868 34 1 3.0443 -0.6090 1.2494 35 1 5.5446 -3.4737 -0.4452 36 1 1.8714 -4.1947 4.6123 37 1 -0.9599 -7.0294 3.5333 38 1 -2.4239 -5.6734 1.2942 39 1 -0.0535 -3.8603 0.8068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228893833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:53 Heat of formation + Delta-G solvation = 78.947410 kcal Electronic energy + Delta-G solvation = -21826.602115 eV Core-core repulsion = 18661.551680 eV Total energy + Delta-G solvation = -3165.050435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.59792 -41.44740 -39.40481 -37.88668 -34.82913 -32.74169 -31.99055 -30.64959 -30.46671 -30.18798 -28.12628 -25.20926 -24.56098 -23.86808 -22.61855 -20.51863 -19.02381 -18.73462 -18.65900 -18.26268 -17.87312 -17.39039 -17.18181 -16.66097 -15.81385 -15.42675 -15.34916 -15.03367 -14.73517 -14.49211 -14.36031 -14.25849 -14.18972 -14.10079 -13.75509 -13.59246 -13.49595 -13.44989 -12.60884 -12.18608 -12.06780 -12.02884 -11.35663 -10.95107 -10.42189 -10.28970 -10.18756 -9.07771 -7.95964 -6.18529 0.06941 0.23460 0.48966 1.74807 1.74964 2.04279 2.11748 2.18988 2.22551 2.62508 2.74283 2.88099 2.99335 3.03180 3.17829 3.19585 3.32349 3.44105 3.47914 3.58481 3.59478 3.77354 3.81090 3.85155 3.90388 4.04789 4.09292 4.13027 4.32280 4.44291 4.69040 4.79237 5.20136 5.27241 5.36029 5.52591 6.29241 6.50201 6.67750 6.95269 7.18190 7.57456 9.09809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.257 5.257 3 C -0.040 4.040 4 C -0.034 4.034 5 C -0.005 4.005 6 C 0.158 3.842 7 H 0.062 0.938 8 C -0.595 4.595 9 H 0.097 0.903 10 C 0.095 3.905 11 N -0.837 5.837 12 Si 0.887 3.113 13 H -0.264 1.264 14 H -0.291 1.291 15 H -0.258 1.258 16 O -0.314 6.314 17 C 0.125 3.875 18 C 0.053 3.947 19 N -0.431 5.431 20 C 0.029 3.971 21 C 0.094 3.906 22 O -0.490 6.490 23 C -0.181 4.181 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.284 0.716 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.391 0.609 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 16.069 -2.318 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 N 0.084 4.916 3 C -0.181 4.181 4 C -0.174 4.174 5 C -0.126 4.126 6 C 0.103 3.897 7 H 0.079 0.921 8 C -0.630 4.630 9 H 0.115 0.885 10 C -0.119 4.119 11 N -0.467 5.467 12 Si 0.716 3.284 13 H -0.189 1.189 14 H -0.219 1.219 15 H -0.185 1.185 16 O -0.227 6.227 17 C 0.077 3.923 18 C -0.106 4.106 19 N -0.140 5.140 20 C -0.129 4.129 21 C 0.047 3.953 22 O -0.299 6.299 23 C -0.208 4.208 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.161 0.839 31 H 0.110 0.890 32 H 0.149 0.851 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.095 0.905 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.248 0.752 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.907 15.367 -1.746 17.847 hybrid contribution -0.013 0.554 -0.019 0.555 sum -8.920 15.921 -1.765 18.334 Atomic orbital electron populations 1.24120 0.77730 1.09000 1.08132 1.45748 1.14347 1.14565 1.16907 1.24055 1.05753 0.80200 1.08118 1.24636 1.07864 1.01634 0.83256 1.24326 1.05305 0.97715 0.85245 1.20706 0.98872 0.87890 0.82183 0.92068 1.21134 0.92475 1.42690 1.06729 0.88537 1.25041 0.96812 0.93112 0.96946 1.69850 1.06051 1.38929 1.31914 0.86847 0.77405 0.80680 0.83430 1.18940 1.21860 1.18453 1.86029 1.61298 1.37803 1.37545 1.19849 0.90073 0.88252 0.94147 1.22263 1.00715 0.92300 0.95336 1.67707 1.04580 1.09750 1.32011 1.22993 0.98716 1.01331 0.89857 1.19356 0.93630 0.92630 0.89639 1.84871 1.21484 1.68049 1.55506 1.21950 0.99729 0.98126 1.00958 0.86884 0.86453 0.86270 0.86317 0.86422 0.86878 0.83901 0.88981 0.85118 0.87140 0.85098 0.90493 0.82241 0.82286 0.75242 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.63 7.83 60.07 0.47 1.10 16 2 N -0.26 2.79 0.05 -395.63 -0.02 2.77 16 3 C -0.04 0.54 7.99 60.07 0.48 1.02 16 4 C -0.03 0.28 6.67 60.06 0.40 0.68 16 5 C 0.00 0.03 3.07 -3.83 -0.01 0.02 16 6 C 0.16 -0.18 1.48 -27.89 -0.04 -0.22 16 7 H 0.06 -0.24 3.73 -51.93 -0.19 -0.43 16 8 C -0.60 -2.24 5.58 -34.44 -0.19 -2.44 16 9 H 0.10 0.57 7.15 -52.48 -0.37 0.19 16 10 C 0.09 0.70 4.94 -17.82 -0.09 0.61 16 11 N -0.84 -8.96 13.96 55.43 0.77 -8.19 16 12 Si 0.89 5.94 24.31 -169.99 -4.13 1.81 16 13 H -0.26 -2.54 7.11 56.52 0.40 -2.14 16 14 H -0.29 -2.45 7.11 56.52 0.40 -2.05 16 15 H -0.26 -0.74 5.12 56.52 0.29 -0.45 16 16 O -0.31 -0.81 6.33 -19.45 -0.12 -0.93 16 17 C 0.13 0.47 6.57 -39.10 -0.26 0.22 16 18 C 0.05 0.26 11.13 -17.36 -0.19 0.06 16 19 N -0.43 -2.42 10.35 -12.99 -0.13 -2.56 16 20 C 0.03 0.11 11.13 -17.36 -0.19 -0.08 16 21 C 0.09 0.29 6.74 -39.10 -0.26 0.02 16 22 O -0.49 -0.70 13.53 -19.46 -0.26 -0.97 16 23 C -0.18 -0.49 8.87 -39.01 -0.35 -0.83 16 24 H 0.11 -1.63 8.12 -51.93 -0.42 -2.05 16 25 H 0.12 -1.75 8.13 -51.93 -0.42 -2.17 16 26 H 0.12 -1.40 5.91 -51.93 -0.31 -1.70 16 27 H 0.12 -1.51 8.11 -51.93 -0.42 -1.93 16 28 H 0.12 -1.80 8.07 -51.93 -0.42 -2.22 16 29 H 0.11 -1.67 8.13 -51.93 -0.42 -2.09 16 30 H 0.14 -0.83 5.20 -51.93 -0.27 -1.10 16 31 H 0.09 -1.02 8.00 -51.93 -0.42 -1.43 16 32 H 0.13 -0.62 7.13 -51.93 -0.37 -0.99 16 33 H 0.11 -0.90 8.10 -51.93 -0.42 -1.32 16 34 H 0.13 -0.53 4.75 -51.93 -0.25 -0.78 16 35 H 0.28 3.07 8.31 -40.82 -0.34 2.73 16 36 H 0.16 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 38 H 0.39 -1.60 9.06 45.56 0.41 -1.18 16 39 H 0.15 0.11 5.90 -52.48 -0.31 -0.20 16 LS Contribution 299.78 15.07 4.52 4.52 Total: 0.00 -20.36 299.78 -4.31 -24.67 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -4.69 Total: -21.28 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.23 Total: 0.15 kcal Atomic # 7 Polarization: -8.59 SS G_CDS: 0.62 Total: -7.97 kcal Atomic # 8 Polarization: -1.51 SS G_CDS: -0.39 Total: -1.90 kcal Atomic # 14 Polarization: 5.94 SS G_CDS: -4.13 Total: 1.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -20.36 -4.31 -24.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228893833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.620 kcal (2) G-P(sol) polarization free energy of solvation -20.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds