Wall clock time and date at job start Mon Mar 30 2020 00:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 109.47010 * 2 1 4 4 C 1.46896 * 109.47221 * 240.00254 * 2 1 3 5 5 C 1.46902 * 109.46920 * 120.00066 * 2 1 3 6 6 C 1.52994 * 109.47061 * 65.43644 * 5 2 1 7 7 H 1.09003 * 109.47288 * 314.49356 * 6 5 2 8 8 C 1.50694 * 109.47344 * 74.49998 * 6 5 2 9 9 H 1.08008 * 120.00143 * 244.75836 * 8 6 5 10 10 C 1.37878 * 120.00328 * 64.75362 * 8 6 5 11 11 N 1.31516 * 120.00296 * 192.10062 * 10 8 6 12 12 Si 1.86794 * 119.99766 * 12.10547 * 10 8 6 13 13 H 1.48506 * 109.47588 * 84.57424 * 12 10 8 14 14 H 1.48500 * 109.47429 * 204.57504 * 12 10 8 15 15 H 1.48508 * 109.47059 * 324.57233 * 12 10 8 16 16 O 1.42906 * 109.47142 * 194.49904 * 6 5 2 17 17 C 1.35907 * 116.99782 * 157.02563 * 16 6 5 18 18 C 1.38793 * 120.43983 * 176.52525 * 17 16 6 19 19 N 1.31799 * 120.80573 * 179.97438 * 18 17 16 20 20 C 1.31840 * 121.83193 * 359.97438 * 19 18 17 21 21 C 1.38743 * 120.80415 * 359.97438 * 20 19 18 22 22 O 1.35911 * 120.44586 * 180.02562 * 21 20 19 23 23 C 1.38991 * 120.44961 * 356.47976 * 17 16 6 24 24 H 1.09003 * 109.46746 * 303.21966 * 1 2 3 25 25 H 1.08997 * 109.46906 * 63.21481 * 1 2 3 26 26 H 1.08994 * 109.47337 * 183.21939 * 1 2 3 27 27 H 1.09002 * 109.46989 * 179.97438 * 3 2 1 28 28 H 1.08993 * 109.47404 * 299.99669 * 3 2 1 29 29 H 1.09001 * 109.47258 * 60.00707 * 3 2 1 30 30 H 1.08998 * 109.46961 * 309.53288 * 4 2 1 31 31 H 1.08994 * 109.47404 * 69.52738 * 4 2 1 32 32 H 1.09002 * 109.47296 * 189.53424 * 4 2 1 33 33 H 1.09004 * 109.47148 * 305.43033 * 5 2 1 34 34 H 1.09004 * 109.46614 * 185.43475 * 5 2 1 35 35 H 0.97002 * 119.99786 * 180.02562 * 11 10 8 36 36 H 1.08004 * 119.59577 * 0.25246 * 18 17 16 37 37 H 1.07993 * 119.59905 * 180.02562 * 20 19 18 38 38 H 0.96701 * 114.00085 * 89.99739 * 22 21 20 39 39 H 1.08003 * 120.83315 * 0.04417 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6924 -1.1994 5 6 1.9586 -0.6925 1.1995 6 6 1.5633 -2.1690 1.1330 7 1 0.5203 -2.2525 0.8272 8 6 2.4385 -2.8789 0.1325 9 1 2.0043 -3.2985 -0.7630 10 6 3.7936 -2.9926 0.3602 11 7 4.5914 -3.3933 -0.6056 12 14 4.4963 -2.5778 2.0405 13 1 4.3826 -3.7611 2.9306 14 1 5.9255 -2.1998 1.8998 15 1 3.7395 -1.4427 2.6270 16 8 1.7312 -2.7656 2.4206 17 6 1.0068 -3.8856 2.6809 18 6 1.1678 -4.5642 3.8809 19 7 0.4687 -5.6507 4.1410 20 6 -0.4062 -6.1368 3.2827 21 6 -0.6248 -5.5148 2.0620 22 8 -1.5288 -6.0218 1.1828 23 6 0.0940 -4.3664 1.7494 24 1 -0.3633 0.5630 0.8598 25 1 -0.3633 0.4631 -0.9174 26 1 -0.3634 -1.0260 0.0577 27 1 3.0487 1.3850 0.0005 28 1 1.5954 1.8988 -0.8899 29 1 1.5954 1.8988 0.8900 30 1 1.4631 -1.6591 -1.2886 31 1 1.7410 -0.0899 -2.0812 32 1 3.0353 -0.8422 -1.1184 33 1 1.5180 -0.2379 2.0868 34 1 3.0443 -0.6090 1.2494 35 1 5.5446 -3.4737 -0.4452 36 1 1.8714 -4.1947 4.6123 37 1 -0.9599 -7.0294 3.5333 38 1 -2.4239 -5.6734 1.2942 39 1 -0.0535 -3.8603 0.8068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228893833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:51 Heat of formation + Delta-G solvation = 65.676028 kcal Electronic energy + Delta-G solvation = -21827.177605 eV Core-core repulsion = 18661.551680 eV Total energy + Delta-G solvation = -3165.625925 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.91164 -41.61452 -39.53169 -38.05803 -35.18616 -32.82761 -32.14660 -30.57798 -29.62419 -29.57298 -27.83473 -25.41377 -24.37927 -23.88977 -22.51463 -20.57113 -19.08753 -18.40123 -18.23039 -18.01963 -17.89028 -17.23894 -17.08224 -16.84852 -15.95460 -15.65949 -15.09586 -14.95572 -14.58315 -14.32981 -13.97819 -13.88516 -13.67305 -13.66375 -13.27706 -13.23575 -13.13652 -12.98496 -12.68809 -12.58478 -12.24953 -12.22538 -11.59020 -11.23495 -10.91700 -10.63501 -10.42580 -9.33906 -8.55408 -6.67771 -0.00551 0.22616 0.83505 1.18024 1.39548 1.49495 2.15440 2.18675 2.64777 2.79163 2.98274 3.01935 3.06929 3.26994 3.61801 3.64346 3.79909 3.88101 3.95797 4.13422 4.19430 4.25207 4.28212 4.39717 4.46124 4.56917 4.60926 4.65717 4.71472 4.81818 4.82499 4.95377 5.04438 5.07425 5.26077 5.34263 5.84181 6.22438 6.49911 6.71658 6.92088 7.07724 8.53164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.244 5.244 3 C -0.045 4.045 4 C -0.031 4.031 5 C 0.003 3.997 6 C 0.147 3.853 7 H 0.097 0.903 8 C -0.551 4.551 9 H 0.075 0.925 10 C 0.063 3.937 11 N -0.900 5.900 12 Si 0.903 3.097 13 H -0.309 1.309 14 H -0.324 1.324 15 H -0.192 1.192 16 O -0.320 6.320 17 C 0.120 3.880 18 C 0.029 3.971 19 N -0.455 5.455 20 C 0.014 3.986 21 C 0.101 3.899 22 O -0.498 6.498 23 C -0.182 4.182 24 H 0.138 0.862 25 H 0.143 0.857 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.150 0.850 34 H 0.109 0.891 35 H 0.268 0.732 36 H 0.161 0.839 37 H 0.173 0.827 38 H 0.417 0.583 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 18.994 -2.443 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 N 0.098 4.902 3 C -0.185 4.185 4 C -0.172 4.172 5 C -0.119 4.119 6 C 0.093 3.907 7 H 0.115 0.885 8 C -0.588 4.588 9 H 0.093 0.907 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.735 3.265 13 H -0.238 1.238 14 H -0.254 1.254 15 H -0.115 1.115 16 O -0.233 6.233 17 C 0.071 3.929 18 C -0.130 4.130 19 N -0.165 5.165 20 C -0.144 4.144 21 C 0.054 3.946 22 O -0.311 6.311 23 C -0.209 4.209 24 H 0.156 0.844 25 H 0.162 0.838 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.167 0.833 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.179 0.821 37 H 0.190 0.810 38 H 0.277 0.723 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.146 18.358 -1.845 22.089 hybrid contribution 0.795 -0.395 -0.044 0.889 sum -11.351 17.963 -1.889 21.332 Atomic orbital electron populations 1.24381 0.75426 1.08857 1.10830 1.45601 1.15813 1.15140 1.13685 1.24313 1.05358 0.78230 1.10644 1.24335 1.05175 1.01770 0.85914 1.23958 1.04649 0.94360 0.88975 1.21027 0.99999 0.89998 0.79718 0.88508 1.21363 0.91539 1.39407 1.06493 0.90722 1.25408 0.97908 0.93774 0.97236 1.69979 1.05350 1.44698 1.33506 0.86651 0.76427 0.81119 0.82324 1.23760 1.25361 1.11454 1.86004 1.61346 1.37454 1.38454 1.19877 0.90316 0.88627 0.94062 1.22384 1.01361 0.92837 0.96369 1.67661 1.05381 1.10362 1.33128 1.23293 0.98760 1.01995 0.90337 1.19346 0.93724 0.92230 0.89277 1.84811 1.22975 1.68348 1.54920 1.22150 0.99176 0.98179 1.01367 0.84373 0.83838 0.87658 0.87508 0.83833 0.84538 0.86558 0.85245 0.88979 0.83267 0.87269 0.92237 0.82130 0.80953 0.72280 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.65 7.83 127.69 1.00 2.65 16 2 N -0.24 5.98 0.05 ******* -0.07 5.91 16 3 C -0.05 1.38 7.99 127.69 1.02 2.40 16 4 C -0.03 0.52 6.67 127.69 0.85 1.37 16 5 C 0.00 -0.04 3.07 86.30 0.26 0.22 16 6 C 0.15 -0.52 1.48 29.84 0.04 -0.47 16 7 H 0.10 -0.99 3.73 -2.39 -0.01 -1.00 16 8 C -0.55 -4.81 5.58 25.60 0.14 -4.67 16 9 H 0.07 1.00 7.15 -2.91 -0.02 0.98 16 10 C 0.06 1.11 4.94 84.65 0.42 1.53 16 11 N -0.90 -23.28 13.96 21.45 0.30 -22.98 16 12 Si 0.90 14.17 24.31 68.60 1.67 15.83 16 13 H -0.31 -7.16 7.11 99.48 0.71 -6.46 16 14 H -0.32 -6.72 7.11 99.48 0.71 -6.02 16 15 H -0.19 -0.85 5.12 99.48 0.51 -0.34 16 16 O -0.32 -1.41 6.33 -92.50 -0.59 -1.99 16 17 C 0.12 0.91 6.57 22.58 0.15 1.05 16 18 C 0.03 0.31 11.13 84.83 0.94 1.26 16 19 N -0.45 -5.64 10.35 -195.02 -2.02 -7.66 16 20 C 0.01 0.12 11.13 84.81 0.94 1.06 16 21 C 0.10 0.56 6.74 22.58 0.15 0.71 16 22 O -0.50 -0.75 13.53 -92.55 -1.25 -2.00 16 23 C -0.18 -0.84 8.87 22.64 0.20 -0.64 16 24 H 0.14 -4.73 8.12 -2.39 -0.02 -4.75 16 25 H 0.14 -4.97 8.13 -2.39 -0.02 -4.99 16 26 H 0.10 -2.82 5.91 -2.39 -0.01 -2.84 16 27 H 0.11 -2.89 8.11 -2.39 -0.02 -2.91 16 28 H 0.14 -5.01 8.07 -2.39 -0.02 -5.02 16 29 H 0.14 -4.68 8.13 -2.39 -0.02 -4.70 16 30 H 0.12 -1.34 5.20 -2.39 -0.01 -1.35 16 31 H 0.13 -3.14 8.00 -2.39 -0.02 -3.16 16 32 H 0.09 -0.73 7.13 -2.39 -0.02 -0.74 16 33 H 0.15 -3.16 8.10 -2.39 -0.02 -3.18 16 34 H 0.11 -1.03 4.75 -2.39 -0.01 -1.04 16 35 H 0.27 7.27 8.31 -92.71 -0.77 6.50 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.42 -4.23 9.06 -74.06 -0.67 -4.90 16 39 H 0.17 -0.04 5.90 -2.91 -0.02 -0.06 16 Total: 0.00 -54.64 299.78 4.37 -50.27 By element: Atomic # 1 Polarization: -44.05 SS G_CDS: 0.20 Total: -43.86 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.13 Total: 6.47 kcal Atomic # 7 Polarization: -22.94 SS G_CDS: -1.79 Total: -24.73 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -1.84 Total: -3.99 kcal Atomic # 14 Polarization: 14.17 SS G_CDS: 1.67 Total: 15.83 kcal Total: -54.64 4.37 -50.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228893833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.944 kcal (2) G-P(sol) polarization free energy of solvation -54.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds