Wall clock time and date at job start Mon Mar 30 2020 00:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 109.47517 * 2 1 4 4 C 1.46900 * 109.47228 * 120.00721 * 2 1 3 5 5 C 1.46905 * 109.46962 * 240.00478 * 2 1 3 6 6 C 1.52995 * 109.47129 * 65.53624 * 5 2 1 7 7 H 1.08997 * 109.46905 * 53.15411 * 6 5 2 8 8 C 1.50704 * 109.47034 * 173.15109 * 6 5 2 9 9 H 1.08002 * 120.00188 * 120.00428 * 8 6 5 10 10 C 1.37878 * 119.99841 * 300.00314 * 8 6 5 11 11 N 1.31513 * 120.00421 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99863 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47366 * 89.99663 * 12 10 8 14 14 H 1.48505 * 109.46932 * 209.99658 * 12 10 8 15 15 H 1.48499 * 109.46961 * 329.99428 * 12 10 8 16 16 O 1.42900 * 109.47372 * 293.15207 * 6 5 2 17 17 C 1.35899 * 116.99882 * 156.08353 * 16 6 5 18 18 C 1.39159 * 120.46641 * 185.28751 * 17 16 6 19 19 C 1.38539 * 118.40161 * 179.97438 * 18 17 16 20 20 C 1.38231 * 119.23316 * 0.02562 * 19 18 17 21 21 N 1.31971 * 120.87459 * 0.02562 * 20 19 18 22 22 O 1.41607 * 119.12603 * 179.97438 * 21 20 19 23 23 C 1.31955 * 121.75241 * 359.71998 * 21 20 19 24 24 H 1.08999 * 109.47045 * 50.17532 * 1 2 3 25 25 H 1.08999 * 109.47064 * 170.17845 * 1 2 3 26 26 H 1.09000 * 109.46549 * 290.18266 * 1 2 3 27 27 H 1.09001 * 109.46602 * 66.71842 * 3 2 1 28 28 H 1.08997 * 109.47397 * 186.71738 * 3 2 1 29 29 H 1.08996 * 109.47118 * 306.72178 * 3 2 1 30 30 H 1.08997 * 109.47275 * 59.99323 * 4 2 1 31 31 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46911 * 299.99524 * 4 2 1 33 33 H 1.08995 * 109.47375 * 185.54250 * 5 2 1 34 34 H 1.09002 * 109.46936 * 305.53789 * 5 2 1 35 35 H 0.96995 * 120.00715 * 180.02562 * 11 10 8 36 36 H 1.08001 * 120.79834 * 0.02562 * 18 17 16 37 37 H 1.07994 * 120.38674 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.56576 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.66283 * 180.26516 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3850 0.0000 4 6 1.9587 -0.6926 1.1993 5 6 1.9587 -0.6924 -1.1995 6 6 1.5655 0.1048 -2.4448 7 1 1.9040 1.1354 -2.3383 8 6 2.2087 -0.5122 -3.6600 9 1 1.5939 -0.8835 -4.4666 10 6 3.5820 -0.6025 -3.7422 11 7 4.3308 -0.1498 -2.7603 12 14 4.3794 -1.3666 -5.2488 13 1 4.6366 -0.3114 -6.2616 14 1 5.6635 -2.0032 -4.8601 15 1 3.4719 -2.3926 -5.8224 16 8 0.1446 0.0832 -2.5952 17 6 -0.4164 1.0989 -3.3028 18 6 -1.8000 1.2101 -3.4014 19 6 -2.3260 2.2624 -4.1330 20 6 -1.4665 3.1608 -4.7371 21 7 -0.1585 3.0267 -4.6251 22 8 0.6878 3.9682 -5.2597 23 6 0.3819 2.0414 -3.9334 24 1 -0.3633 0.6582 -0.7892 25 1 -0.3633 -1.0126 -0.1753 26 1 -0.3632 0.3546 0.9646 27 1 1.6969 1.8629 0.9440 28 1 3.0421 1.3873 -0.1202 29 1 1.5006 1.9324 -0.8237 30 1 1.5953 -1.7202 1.1993 31 1 3.0487 -0.6930 1.1991 32 1 1.5954 -0.1788 2.0894 33 1 3.0441 -0.7792 -1.1514 34 1 1.5166 -1.6875 -1.2506 35 1 5.2969 -0.2130 -2.8182 36 1 -2.4482 0.4937 -2.9186 37 1 -3.3952 2.3796 -4.2302 38 1 -1.8708 3.9834 -5.3083 39 1 1.4567 1.9663 -3.8604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229326007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:55 Heat of formation + Delta-G solvation = 129.556014 kcal Electronic energy + Delta-G solvation = -21809.148929 eV Core-core repulsion = 18646.293048 eV Total energy + Delta-G solvation = -3162.855881 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.57522 -42.21357 -39.65320 -35.60170 -34.77859 -32.27775 -31.42971 -30.50458 -30.42323 -30.35874 -28.09374 -25.66734 -25.06304 -24.58705 -22.80105 -19.81451 -19.41976 -18.87784 -18.58411 -18.05887 -17.94729 -17.72386 -16.54256 -16.48403 -16.01049 -15.58233 -15.43492 -15.18611 -15.06119 -14.75512 -14.29839 -14.14964 -14.07810 -13.95823 -13.81941 -13.43305 -13.31190 -13.09346 -12.56927 -12.29748 -12.07695 -11.82533 -11.64270 -11.12142 -10.28231 -10.03320 -9.88270 -9.29490 -8.07421 -6.21615 -0.34130 -0.23742 0.17807 1.62892 1.91571 2.05885 2.17277 2.18560 2.21661 2.22786 2.25187 2.30267 2.88048 3.07122 3.11565 3.27854 3.29332 3.32223 3.47476 3.50390 3.55277 3.59593 3.65647 3.68233 3.81360 3.82502 3.89731 3.95937 4.04724 4.18257 4.47579 4.66626 4.75444 4.77300 4.94079 5.76814 5.85442 5.97102 6.07680 6.33566 6.96998 7.60610 8.98460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.272 5.272 3 C -0.042 4.042 4 C -0.041 4.041 5 C -0.006 4.006 6 C 0.191 3.809 7 H 0.058 0.942 8 C -0.557 4.557 9 H 0.085 0.915 10 C 0.081 3.919 11 N -0.890 5.890 12 Si 0.914 3.086 13 H -0.266 1.266 14 H -0.275 1.275 15 H -0.265 1.265 16 O -0.309 6.309 17 C 0.141 3.859 18 C -0.127 4.127 19 C -0.086 4.086 20 C 0.027 3.973 21 N -0.086 5.086 22 O -0.539 6.539 23 C -0.003 4.003 24 H 0.124 0.876 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.170 0.830 34 H 0.116 0.884 35 H 0.286 0.714 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.181 0.819 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.948 -3.205 17.365 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 N 0.070 4.930 3 C -0.183 4.183 4 C -0.182 4.182 5 C -0.125 4.125 6 C 0.136 3.864 7 H 0.075 0.925 8 C -0.594 4.594 9 H 0.103 0.897 10 C -0.126 4.126 11 N -0.525 5.525 12 Si 0.739 3.261 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.189 1.189 16 O -0.222 6.222 17 C 0.093 3.907 18 C -0.153 4.153 19 C -0.104 4.104 20 C -0.119 4.119 21 N 0.237 4.763 22 O -0.596 6.596 23 C -0.150 4.150 24 H 0.142 0.858 25 H 0.135 0.865 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.187 0.813 34 H 0.134 0.866 35 H 0.096 0.904 36 H 0.174 0.826 37 H 0.186 0.814 38 H 0.198 0.802 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -9.543 -3.098 17.339 20.033 hybrid contribution 0.831 -0.265 -0.954 1.293 sum -8.712 -3.363 16.385 18.860 Atomic orbital electron populations 1.24277 0.77277 1.09436 1.07584 1.46328 1.14829 1.15526 1.16310 1.24083 1.06546 0.80355 1.07349 1.24029 1.05644 1.01482 0.87086 1.25067 1.08104 0.99002 0.80348 1.20746 0.73562 0.98113 0.93937 0.92467 1.21348 0.92171 1.43669 1.02182 0.89673 1.24970 0.96684 0.93091 0.97895 1.69455 1.07636 1.43321 1.32125 0.86109 0.78941 0.79977 0.81057 1.19127 1.20025 1.18948 1.86053 1.26562 1.43128 1.66442 1.19003 0.91983 0.87374 0.92345 1.21170 0.92050 1.00118 1.01925 1.21606 1.01574 0.92481 0.94782 1.22615 0.82918 1.03070 1.03296 1.43050 1.06171 1.11907 1.15184 1.97692 1.54558 1.40518 1.66837 1.23021 1.03270 0.90471 0.98255 0.85798 0.86517 0.87669 0.87216 0.85361 0.86932 0.86731 0.86317 0.87102 0.81268 0.86569 0.90383 0.82586 0.81418 0.80198 0.78617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.52 7.21 60.07 0.43 0.95 16 2 N -0.27 2.90 0.05 -395.63 -0.02 2.88 16 3 C -0.04 0.42 7.40 60.07 0.44 0.86 16 4 C -0.04 0.53 7.98 60.06 0.48 1.01 16 5 C -0.01 0.03 3.69 -3.82 -0.01 0.02 16 6 C 0.19 -0.08 1.19 -27.88 -0.03 -0.12 16 7 H 0.06 0.00 4.21 -51.93 -0.22 -0.22 16 8 C -0.56 -3.20 7.89 -34.44 -0.27 -3.47 16 9 H 0.09 0.67 7.81 -52.49 -0.41 0.26 16 10 C 0.08 0.60 5.28 -17.82 -0.09 0.51 16 11 N -0.89 -5.93 11.29 55.43 0.63 -5.30 16 12 Si 0.91 7.65 29.54 -169.99 -5.02 2.63 16 13 H -0.27 -2.72 7.11 56.52 0.40 -2.32 16 14 H -0.28 -2.44 7.11 56.52 0.40 -2.03 16 15 H -0.27 -2.36 7.11 56.52 0.40 -1.96 16 16 O -0.31 0.67 6.80 -19.42 -0.13 0.54 16 17 C 0.14 -0.12 6.17 -39.08 -0.24 -0.36 16 18 C -0.13 0.44 10.13 -39.13 -0.40 0.05 16 19 C -0.09 0.28 10.10 -39.47 -0.40 -0.12 16 20 C 0.03 0.03 10.68 -17.49 -0.19 -0.16 16 21 N -0.09 -0.51 3.58 -13.09 -0.05 -0.56 16 22 O -0.54 -7.21 20.06 -11.47 -0.23 -7.44 16 23 C 0.00 -0.01 9.38 -17.34 -0.16 -0.17 16 24 H 0.12 -1.23 5.20 -51.93 -0.27 -1.50 16 25 H 0.12 -1.39 7.91 -51.93 -0.41 -1.80 16 26 H 0.10 -1.49 7.99 -51.93 -0.42 -1.91 16 27 H 0.11 -1.42 8.06 -51.93 -0.42 -1.84 16 28 H 0.13 -1.09 8.09 -51.93 -0.42 -1.51 16 29 H 0.11 -0.93 6.12 -51.93 -0.32 -1.25 16 30 H 0.11 -1.56 8.14 -51.93 -0.42 -1.99 16 31 H 0.12 -1.48 8.11 -51.93 -0.42 -1.90 16 32 H 0.11 -1.66 8.02 -51.93 -0.42 -2.08 16 33 H 0.17 -0.44 5.85 -51.93 -0.30 -0.75 16 34 H 0.12 -0.66 7.95 -51.93 -0.41 -1.07 16 35 H 0.29 2.14 8.31 -40.82 -0.34 1.80 16 36 H 0.16 -1.03 8.06 -52.49 -0.42 -1.45 16 37 H 0.17 -1.16 8.06 -52.49 -0.42 -1.58 16 38 H 0.18 -0.05 8.06 -52.49 -0.42 -0.48 16 39 H 0.20 1.04 5.69 -52.49 -0.30 0.74 16 LS Contribution 311.39 15.07 4.69 4.69 Total: 0.00 -22.25 311.39 -6.13 -28.38 By element: Atomic # 1 Polarization: -19.27 SS G_CDS: -5.56 Total: -24.83 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.44 Total: -1.00 kcal Atomic # 7 Polarization: -3.54 SS G_CDS: 0.56 Total: -2.98 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.36 Total: -6.90 kcal Atomic # 14 Polarization: 7.65 SS G_CDS: -5.02 Total: 2.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -22.25 -6.13 -28.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229326007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.940 kcal (2) G-P(sol) polarization free energy of solvation -22.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds