Wall clock time and date at job start Mon Mar 30 2020 00:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 109.47517 * 2 1 4 4 C 1.46900 * 109.47228 * 120.00721 * 2 1 3 5 5 C 1.46905 * 109.46962 * 240.00478 * 2 1 3 6 6 C 1.52995 * 109.47129 * 65.53624 * 5 2 1 7 7 H 1.08997 * 109.46905 * 53.15411 * 6 5 2 8 8 C 1.50704 * 109.47034 * 173.15109 * 6 5 2 9 9 H 1.08002 * 120.00188 * 120.00428 * 8 6 5 10 10 C 1.37878 * 119.99841 * 300.00314 * 8 6 5 11 11 N 1.31513 * 120.00421 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99863 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47366 * 89.99663 * 12 10 8 14 14 H 1.48505 * 109.46932 * 209.99658 * 12 10 8 15 15 H 1.48499 * 109.46961 * 329.99428 * 12 10 8 16 16 O 1.42900 * 109.47372 * 293.15207 * 6 5 2 17 17 C 1.35899 * 116.99882 * 156.08353 * 16 6 5 18 18 C 1.39159 * 120.46641 * 185.28751 * 17 16 6 19 19 C 1.38539 * 118.40161 * 179.97438 * 18 17 16 20 20 C 1.38231 * 119.23316 * 0.02562 * 19 18 17 21 21 N 1.31971 * 120.87459 * 0.02562 * 20 19 18 22 22 O 1.41607 * 119.12603 * 179.97438 * 21 20 19 23 23 C 1.31955 * 121.75241 * 359.71998 * 21 20 19 24 24 H 1.08999 * 109.47045 * 50.17532 * 1 2 3 25 25 H 1.08999 * 109.47064 * 170.17845 * 1 2 3 26 26 H 1.09000 * 109.46549 * 290.18266 * 1 2 3 27 27 H 1.09001 * 109.46602 * 66.71842 * 3 2 1 28 28 H 1.08997 * 109.47397 * 186.71738 * 3 2 1 29 29 H 1.08996 * 109.47118 * 306.72178 * 3 2 1 30 30 H 1.08997 * 109.47275 * 59.99323 * 4 2 1 31 31 H 1.08998 * 109.47146 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.46911 * 299.99524 * 4 2 1 33 33 H 1.08995 * 109.47375 * 185.54250 * 5 2 1 34 34 H 1.09002 * 109.46936 * 305.53789 * 5 2 1 35 35 H 0.96995 * 120.00715 * 180.02562 * 11 10 8 36 36 H 1.08001 * 120.79834 * 0.02562 * 18 17 16 37 37 H 1.07994 * 120.38674 * 180.02562 * 19 18 17 38 38 H 1.08001 * 119.56576 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.66283 * 180.26516 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3850 0.0000 4 6 1.9587 -0.6926 1.1993 5 6 1.9587 -0.6924 -1.1995 6 6 1.5655 0.1048 -2.4448 7 1 1.9040 1.1354 -2.3383 8 6 2.2087 -0.5122 -3.6600 9 1 1.5939 -0.8835 -4.4666 10 6 3.5820 -0.6025 -3.7422 11 7 4.3308 -0.1498 -2.7603 12 14 4.3794 -1.3666 -5.2488 13 1 4.6366 -0.3114 -6.2616 14 1 5.6635 -2.0032 -4.8601 15 1 3.4719 -2.3926 -5.8224 16 8 0.1446 0.0832 -2.5952 17 6 -0.4164 1.0989 -3.3028 18 6 -1.8000 1.2101 -3.4014 19 6 -2.3260 2.2624 -4.1330 20 6 -1.4665 3.1608 -4.7371 21 7 -0.1585 3.0267 -4.6251 22 8 0.6878 3.9682 -5.2597 23 6 0.3819 2.0414 -3.9334 24 1 -0.3633 0.6582 -0.7892 25 1 -0.3633 -1.0126 -0.1753 26 1 -0.3632 0.3546 0.9646 27 1 1.6969 1.8629 0.9440 28 1 3.0421 1.3873 -0.1202 29 1 1.5006 1.9324 -0.8237 30 1 1.5953 -1.7202 1.1993 31 1 3.0487 -0.6930 1.1991 32 1 1.5954 -0.1788 2.0894 33 1 3.0441 -0.7792 -1.1514 34 1 1.5166 -1.6875 -1.2506 35 1 5.2969 -0.2130 -2.8182 36 1 -2.4482 0.4937 -2.9186 37 1 -3.3952 2.3796 -4.2302 38 1 -1.8708 3.9834 -5.3083 39 1 1.4567 1.9663 -3.8604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229326007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:55 Heat of formation + Delta-G solvation = 117.943302 kcal Electronic energy + Delta-G solvation = -21809.652494 eV Core-core repulsion = 18646.293048 eV Total energy + Delta-G solvation = -3163.359446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.02385 -42.16263 -39.59527 -35.82379 -35.00620 -32.29797 -31.59133 -30.70088 -29.63277 -29.44079 -28.04838 -25.75635 -24.93301 -24.33563 -22.59114 -19.87534 -19.38837 -18.62684 -18.03540 -17.81460 -17.71400 -17.27074 -16.70843 -16.64952 -16.35978 -15.55145 -15.44050 -14.97644 -14.41287 -14.35984 -13.88837 -13.53449 -13.36884 -13.30788 -13.21426 -13.14937 -13.13510 -12.90866 -12.84225 -12.69853 -12.49980 -12.02316 -11.96729 -11.37251 -10.84196 -10.75442 -10.19136 -9.71236 -8.63080 -6.70467 -0.36374 -0.24453 0.96441 1.26905 1.38228 1.44178 1.50623 1.93887 2.18666 2.22708 2.71249 2.98714 3.08179 3.12786 3.24208 3.56633 3.75934 3.78218 3.87692 4.03396 4.16868 4.23512 4.28415 4.32652 4.43117 4.51330 4.59241 4.63367 4.73436 4.76773 4.81301 4.82863 4.87554 5.00565 5.09178 5.40852 5.55392 5.68929 5.90659 5.98151 6.45576 7.07003 8.39702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.259 5.259 3 C -0.045 4.045 4 C -0.043 4.043 5 C 0.015 3.985 6 C 0.193 3.807 7 H 0.052 0.948 8 C -0.558 4.558 9 H 0.059 0.941 10 C 0.062 3.938 11 N -0.886 5.886 12 Si 0.921 3.079 13 H -0.301 1.301 14 H -0.279 1.279 15 H -0.271 1.271 16 O -0.284 6.284 17 C 0.145 3.855 18 C -0.086 4.086 19 C -0.058 4.058 20 C 0.021 3.979 21 N -0.119 5.119 22 O -0.638 6.638 23 C -0.028 4.028 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.132 0.868 35 H 0.277 0.723 36 H 0.211 0.789 37 H 0.224 0.776 38 H 0.186 0.814 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -4.823 21.186 25.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 N 0.083 4.917 3 C -0.186 4.186 4 C -0.183 4.183 5 C -0.106 4.106 6 C 0.138 3.862 7 H 0.069 0.931 8 C -0.596 4.596 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.523 5.523 12 Si 0.750 3.250 13 H -0.229 1.229 14 H -0.204 1.204 15 H -0.196 1.196 16 O -0.196 6.196 17 C 0.097 3.903 18 C -0.111 4.111 19 C -0.076 4.076 20 C -0.126 4.126 21 N 0.201 4.799 22 O -0.691 6.691 23 C -0.174 4.174 24 H 0.124 0.876 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.168 0.832 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.146 0.854 31 H 0.127 0.873 32 H 0.161 0.839 33 H 0.164 0.836 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.228 0.772 37 H 0.241 0.759 38 H 0.203 0.797 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.820 -4.713 21.164 25.712 hybrid contribution 1.923 0.155 -2.089 2.844 sum -11.897 -4.557 19.075 22.938 Atomic orbital electron populations 1.24457 0.75659 1.09858 1.09152 1.45980 1.15877 1.14754 1.15042 1.24110 1.05202 0.80711 1.08623 1.24237 1.05332 1.02386 0.86349 1.24210 1.06718 0.98763 0.80910 1.20477 0.74039 0.97840 0.93879 0.93116 1.21483 0.91644 1.42240 1.04260 0.92312 1.24939 0.97600 0.94482 0.97266 1.69501 1.06788 1.44504 1.31461 0.86091 0.78845 0.78697 0.81363 1.22858 1.20429 1.19600 1.86110 1.25277 1.42430 1.65763 1.19225 0.93007 0.86364 0.91712 1.21867 0.90547 0.99671 0.99061 1.22271 1.03137 0.90209 0.92009 1.23254 0.81631 1.04429 1.03315 1.42964 1.07136 1.12382 1.17448 1.97621 1.56971 1.43875 1.70609 1.22790 1.02731 0.91832 1.00005 0.87584 0.85499 0.83892 0.83200 0.87426 0.89167 0.85430 0.87290 0.83866 0.83555 0.84976 0.91292 0.77202 0.75947 0.79724 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.38 7.21 127.69 0.92 2.31 16 2 N -0.26 6.04 0.05 ******* -0.07 5.97 16 3 C -0.04 0.92 7.40 127.69 0.94 1.87 16 4 C -0.04 1.25 7.98 127.69 1.02 2.27 16 5 C 0.02 -0.16 3.69 86.30 0.32 0.16 16 6 C 0.19 0.05 1.19 29.85 0.04 0.08 16 7 H 0.05 0.14 4.21 -2.39 -0.01 0.13 16 8 C -0.56 -7.95 7.89 25.60 0.20 -7.75 16 9 H 0.06 1.11 7.81 -2.91 -0.02 1.09 16 10 C 0.06 1.14 5.28 84.66 0.45 1.59 16 11 N -0.89 -14.53 11.29 21.45 0.24 -14.29 16 12 Si 0.92 19.07 29.54 68.60 2.03 21.10 16 13 H -0.30 -7.83 7.11 99.48 0.71 -7.12 16 14 H -0.28 -5.83 7.11 99.48 0.71 -5.12 16 15 H -0.27 -5.72 7.11 99.48 0.71 -5.02 16 16 O -0.28 1.56 6.80 -92.42 -0.63 0.93 16 17 C 0.15 -0.37 6.17 22.60 0.14 -0.23 16 18 C -0.09 0.99 10.13 22.56 0.23 1.22 16 19 C -0.06 0.62 10.10 22.34 0.23 0.84 16 20 C 0.02 0.05 10.68 84.67 0.90 0.96 16 21 N -0.12 -1.83 3.58 -195.32 -0.70 -2.52 16 22 O -0.64 -21.23 20.06 -38.80 -0.78 -22.01 16 23 C -0.03 -0.27 9.38 84.78 0.80 0.52 16 24 H 0.11 -2.45 5.20 -2.39 -0.01 -2.46 16 25 H 0.13 -3.61 7.91 -2.39 -0.02 -3.63 16 26 H 0.14 -4.85 7.99 -2.39 -0.02 -4.87 16 27 H 0.15 -4.28 8.06 -2.39 -0.02 -4.30 16 28 H 0.11 -1.70 8.09 -2.39 -0.02 -1.72 16 29 H 0.09 -1.40 6.12 -2.39 -0.01 -1.41 16 30 H 0.13 -3.94 8.14 -2.39 -0.02 -3.96 16 31 H 0.11 -2.86 8.11 -2.39 -0.02 -2.88 16 32 H 0.14 -4.97 8.02 -2.39 -0.02 -4.99 16 33 H 0.15 -0.64 5.85 -2.39 -0.01 -0.65 16 34 H 0.13 -1.75 7.95 -2.39 -0.02 -1.77 16 35 H 0.28 5.02 8.31 -92.71 -0.77 4.25 16 36 H 0.21 -4.46 8.06 -2.91 -0.02 -4.49 16 37 H 0.22 -4.64 8.06 -2.91 -0.02 -4.67 16 38 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 39 H 0.16 2.62 5.69 -2.91 -0.02 2.61 16 Total: 0.00 -65.24 311.39 7.31 -57.93 By element: Atomic # 1 Polarization: -51.98 SS G_CDS: 1.04 Total: -50.94 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.18 Total: 3.84 kcal Atomic # 7 Polarization: -10.31 SS G_CDS: -0.52 Total: -10.84 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.41 Total: -21.08 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: 2.03 Total: 21.10 kcal Total: -65.24 7.31 -57.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229326007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.869 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds