Wall clock time and date at job start Mon Mar 30 2020 00:53:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46903 * 109.46800 * 2 1
4 4 C 1.46895 * 109.47205 * 240.00186 * 2 1 3
5 5 C 1.46897 * 109.47278 * 119.99681 * 2 1 3
6 6 C 1.53000 * 109.47042 * 62.90311 * 5 2 1
7 7 H 1.09001 * 109.46826 * 53.29859 * 6 5 2
8 8 C 1.50705 * 109.47060 * 173.29664 * 6 5 2
9 9 H 1.07997 * 120.00296 * 114.77140 * 8 6 5
10 10 C 1.37883 * 119.99833 * 294.76700 * 8 6 5
11 11 N 1.31514 * 120.00018 * 353.65809 * 10 8 6
12 12 Si 1.86794 * 119.99833 * 173.65657 * 10 8 6
13 13 H 1.48504 * 109.47033 * 180.02562 * 12 10 8
14 14 H 1.48505 * 109.47188 * 299.99997 * 12 10 8
15 15 H 1.48503 * 109.47200 * 60.00181 * 12 10 8
16 16 O 1.42898 * 109.47355 * 293.29355 * 6 5 2
17 17 C 1.36096 * 117.00120 * 156.32726 * 16 6 5
18 18 C 1.35433 * 120.41102 * 4.97768 * 17 16 6
19 19 N 1.35871 * 120.60487 * 179.76472 * 18 17 16
20 20 H 0.96995 * 119.26770 * 180.24690 * 19 18 17
21 21 C 1.35467 * 121.46532 * 0.52699 * 19 18 17
22 22 C 1.35188 * 120.79055 * 359.73763 * 21 19 18
23 23 C 1.41280 * 119.32249 * 0.02562 * 22 21 19
24 24 O 1.22298 * 120.67692 * 180.02562 * 23 22 21
25 25 H 1.09002 * 109.47231 * 288.92298 * 1 2 3
26 26 H 1.08998 * 109.47396 * 48.92907 * 1 2 3
27 27 H 1.09003 * 109.46749 * 168.92873 * 1 2 3
28 28 H 1.08994 * 109.47247 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.47341 * 299.99907 * 3 2 1
30 30 H 1.09001 * 109.47601 * 59.99645 * 3 2 1
31 31 H 1.08993 * 109.47152 * 307.03022 * 4 2 1
32 32 H 1.08991 * 109.47435 * 67.03797 * 4 2 1
33 33 H 1.09005 * 109.47015 * 187.03944 * 4 2 1
34 34 H 1.09008 * 109.46945 * 302.90344 * 5 2 1
35 35 H 1.09000 * 109.47549 * 182.90680 * 5 2 1
36 36 H 0.97007 * 120.00208 * 358.31027 * 11 10 8
37 37 H 1.07994 * 119.69930 * 0.02562 * 18 17 16
38 38 H 1.07997 * 119.60164 * 179.71846 * 21 19 18
39 39 H 1.07997 * 120.34304 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9586 1.3850 0.0000
4 6 1.9587 -0.6924 -1.1994
5 6 1.9587 -0.6924 1.1994
6 6 1.5093 -2.1545 1.1635
7 1 1.8131 -2.6048 0.2186
8 6 2.1464 -2.9041 2.3051
9 1 1.5315 -3.3094 3.0950
10 6 3.5145 -3.0724 2.3411
11 7 4.2511 -2.6899 1.3210
12 14 4.3214 -3.8437 3.8388
13 1 5.7902 -3.9111 3.6301
14 1 4.0298 -3.0183 5.0384
15 1 3.7859 -5.2143 4.0390
16 8 0.0870 -2.2188 1.2864
17 6 -0.5261 -3.3294 0.7937
18 6 0.2075 -4.3594 0.3088
19 7 -0.4004 -5.4721 -0.1796
20 1 0.1440 -6.1997 -0.5188
21 6 -1.7500 -5.5855 -0.2084
22 6 -2.5382 -4.5902 0.2560
23 6 -1.9411 -3.4201 0.7758
24 8 -2.6304 -2.5046 1.2029
25 1 -0.3634 0.3333 0.9721
26 1 -0.3634 0.6751 -0.7747
27 1 -0.3633 -1.0086 -0.1974
28 1 3.0486 1.3851 0.0005
29 1 1.5953 1.8989 -0.8900
30 1 1.5953 1.8989 0.8899
31 1 1.4964 -1.6773 -1.2646
32 1 1.7019 -0.1111 -2.0849
33 1 3.0415 -0.8028 -1.1386
34 1 1.5535 -0.2094 2.0887
35 1 3.0475 -0.6475 1.2259
36 1 3.8299 -2.3119 0.5332
37 1 1.2857 -4.2975 0.3141
38 1 -2.2016 -6.4817 -0.6074
39 1 -3.6134 -4.6881 0.2292
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001229511048.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:53:58
Heat of formation + Delta-G solvation = 68.722549 kcal
Electronic energy + Delta-G solvation = -22022.809909 eV
Core-core repulsion = 18857.316091 eV
Total energy + Delta-G solvation = -3165.493818 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.150 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-43.54913 -41.80696 -39.14176 -38.37003 -35.41385 -32.28972 -31.96624 -30.78838
-30.46932 -30.25929 -27.74461 -25.35026 -24.58032 -24.05335 -22.55638 -20.50891
-19.59148 -18.87102 -18.51369 -18.34005 -17.94390 -17.58848 -16.99325 -16.38975
-15.49416 -15.22581 -15.21097 -15.05589 -14.98973 -14.61729 -14.28989 -14.18742
-14.13923 -13.98227 -13.90224 -13.84118 -13.59096 -13.40217 -13.09344 -12.59760
-12.27251 -11.86247 -11.36536 -10.67213 -10.25292 -10.20004 -10.05405 -8.48344
-8.24445 -6.15523 0.18098 0.39626 0.47017 1.91460 2.06936 2.16923
2.22312 2.24461 2.29468 2.42074 2.44828 2.89753 2.99651 3.09064
3.13116 3.31242 3.37392 3.46952 3.56559 3.64476 3.66787 3.68489
3.74070 3.85508 3.86190 3.95913 4.03772 4.17835 4.27478 4.34268
4.65529 4.83332 5.05933 5.36588 5.76041 5.88808 5.96866 6.32241
6.68402 6.89930 7.28550 7.53870 9.04406
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.039 4.039
2 N -0.271 5.271
3 C -0.043 4.043
4 C -0.044 4.044
5 C -0.010 4.010
6 C 0.180 3.820
7 H 0.039 0.961
8 C -0.622 4.622
9 H 0.079 0.921
10 C 0.041 3.959
11 N -0.880 5.880
12 Si 1.064 2.936
13 H -0.274 1.274
14 H -0.277 1.277
15 H -0.278 1.278
16 O -0.297 6.297
17 C -0.028 4.028
18 C 0.026 3.974
19 N -0.571 5.571
20 H 0.423 0.577
21 C 0.144 3.856
22 C -0.303 4.303
23 C 0.397 3.603
24 O -0.520 6.520
25 H 0.119 0.881
26 H 0.103 0.897
27 H 0.129 0.871
28 H 0.116 0.884
29 H 0.112 0.888
30 H 0.116 0.884
31 H 0.114 0.886
32 H 0.113 0.887
33 H 0.120 0.880
34 H 0.124 0.876
35 H 0.141 0.859
36 H 0.260 0.740
37 H 0.177 0.823
38 H 0.167 0.833
39 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.743 5.836 -11.077 12.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 N 0.070 4.930
3 C -0.185 4.185
4 C -0.186 4.186
5 C -0.129 4.129
6 C 0.124 3.876
7 H 0.056 0.944
8 C -0.659 4.659
9 H 0.097 0.903
10 C -0.166 4.166
11 N -0.514 5.514
12 Si 0.888 3.112
13 H -0.198 1.198
14 H -0.203 1.203
15 H -0.203 1.203
16 O -0.210 6.210
17 C -0.078 4.078
18 C -0.099 4.099
19 N -0.179 5.179
20 H 0.259 0.741
21 C 0.013 3.987
22 C -0.329 4.329
23 C 0.289 3.711
24 O -0.406 6.406
25 H 0.138 0.862
26 H 0.122 0.878
27 H 0.147 0.853
28 H 0.135 0.865
29 H 0.131 0.869
30 H 0.135 0.865
31 H 0.132 0.868
32 H 0.132 0.868
33 H 0.139 0.861
34 H 0.142 0.858
35 H 0.158 0.842
36 H 0.071 0.929
37 H 0.193 0.807
38 H 0.184 0.816
39 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -1.682 6.137 -10.086 11.925
hybrid contribution -0.902 -0.143 -0.729 1.168
sum -2.584 5.994 -10.814 12.632
Atomic orbital electron populations
1.24306 0.75869 1.09611 1.08195 1.46349 1.15713 1.14602 1.16315
1.24066 1.05268 0.80876 1.08283 1.24077 1.05613 1.01855 0.87018
1.25035 1.05383 0.96842 0.85641 1.20513 0.77510 0.89609 0.99949
0.94408 1.22321 0.95277 1.38363 1.09912 0.90258 1.26152 0.93805
0.94260 1.02425 1.71217 1.38612 1.37227 1.04316 0.83498 0.77023
0.77045 0.73613 1.19815 1.20281 1.20347 1.86123 1.21816 1.35966
1.77141 1.20195 0.94178 0.89677 1.03792 1.22037 0.99818 0.87252
1.00839 1.40898 1.06215 1.17544 1.53285 0.74140 1.21901 0.82502
0.99667 0.94634 1.22055 1.01562 0.96579 1.12676 1.16934 0.86069
0.88211 0.79864 1.90829 1.65424 1.40354 1.44029 0.86235 0.87810
0.85264 0.86549 0.86894 0.86538 0.86764 0.86836 0.86114 0.85754
0.84168 0.92919 0.80653 0.81592 0.83031
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.04 0.30 7.06 60.07 0.42 0.72 16
2 N -0.27 2.39 0.05 -395.63 -0.02 2.37 16
3 C -0.04 0.50 7.98 60.07 0.48 0.98 16
4 C -0.04 0.42 7.49 60.06 0.45 0.87 16
5 C -0.01 0.03 3.47 -3.83 -0.01 0.02 16
6 C 0.18 0.20 0.84 -27.88 -0.02 0.17 16
7 H 0.04 -0.01 3.68 -51.93 -0.19 -0.20 16
8 C -0.62 -4.17 7.79 -34.44 -0.27 -4.44 16
9 H 0.08 0.77 7.82 -52.49 -0.41 0.36 16
10 C 0.04 0.33 5.20 -17.82 -0.09 0.24 16
11 N -0.88 -7.09 12.90 55.43 0.71 -6.37 16
12 Si 1.06 8.36 29.91 -169.99 -5.08 3.28 16
13 H -0.27 -2.48 7.11 56.52 0.40 -2.08 16
14 H -0.28 -2.22 7.11 56.52 0.40 -1.81 16
15 H -0.28 -2.26 7.11 56.52 0.40 -1.86 16
16 O -0.30 -0.71 6.62 -35.62 -0.24 -0.94 16
17 C -0.03 -0.08 6.09 -39.22 -0.24 -0.31 16
18 C 0.03 0.01 9.88 -16.76 -0.17 -0.16 16
19 N -0.57 1.54 5.25 -12.95 -0.07 1.47 16
20 H 0.42 -2.48 8.90 -40.82 -0.36 -2.84 16
21 C 0.14 -0.37 11.16 -17.03 -0.19 -0.56 16
22 C -0.30 -0.33 10.00 -39.51 -0.39 -0.72 16
23 C 0.40 1.78 6.77 -37.07 -0.25 1.53 16
24 O -0.52 -4.33 17.72 -10.93 -0.19 -4.52 16
25 H 0.12 -0.76 7.93 -51.93 -0.41 -1.17 16
26 H 0.10 -1.09 7.97 -51.93 -0.41 -1.50 16
27 H 0.13 -0.59 5.20 -51.93 -0.27 -0.86 16
28 H 0.12 -1.36 8.13 -51.93 -0.42 -1.78 16
29 H 0.11 -1.53 8.01 -51.93 -0.42 -1.95 16
30 H 0.12 -1.37 8.14 -51.93 -0.42 -1.79 16
31 H 0.11 -0.93 6.14 -51.93 -0.32 -1.25 16
32 H 0.11 -1.41 8.05 -51.93 -0.42 -1.82 16
33 H 0.12 -1.10 8.03 -51.93 -0.42 -1.51 16
34 H 0.12 -0.37 8.00 -51.92 -0.42 -0.79 16
35 H 0.14 -0.28 6.21 -51.93 -0.32 -0.60 16
36 H 0.26 1.26 6.02 -40.82 -0.25 1.02 16
37 H 0.18 0.13 5.59 -52.49 -0.29 -0.17 16
38 H 0.17 -1.08 8.06 -52.49 -0.42 -1.50 16
39 H 0.15 0.05 8.06 -52.49 -0.42 -0.37 16
LS Contribution 307.41 15.07 4.63 4.63
Total: 0.00 -20.31 307.41 -5.93 -26.24
By element:
Atomic # 1 Polarization: -19.11 SS G_CDS: -5.39 Total: -24.50 kcal
Atomic # 6 Polarization: -1.38 SS G_CDS: -0.29 Total: -1.66 kcal
Atomic # 7 Polarization: -3.15 SS G_CDS: 0.63 Total: -2.52 kcal
Atomic # 8 Polarization: -5.03 SS G_CDS: -0.43 Total: -5.46 kcal
Atomic # 14 Polarization: 8.36 SS G_CDS: -5.08 Total: 3.28 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -20.31 -5.93 -26.24 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229511048.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.964 kcal
(2) G-P(sol) polarization free energy of solvation -20.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds