Wall clock time and date at job start Mon Mar 30 2020 00:53:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46903 * 1
3 3 C 1.46903 * 109.46800 * 2 1
4 4 C 1.46895 * 109.47205 * 240.00186 * 2 1 3
5 5 C 1.46897 * 109.47278 * 119.99681 * 2 1 3
6 6 C 1.53000 * 109.47042 * 62.90311 * 5 2 1
7 7 H 1.09001 * 109.46826 * 53.29859 * 6 5 2
8 8 C 1.50705 * 109.47060 * 173.29664 * 6 5 2
9 9 H 1.07997 * 120.00296 * 114.77140 * 8 6 5
10 10 C 1.37883 * 119.99833 * 294.76700 * 8 6 5
11 11 N 1.31514 * 120.00018 * 353.65809 * 10 8 6
12 12 Si 1.86794 * 119.99833 * 173.65657 * 10 8 6
13 13 H 1.48504 * 109.47033 * 180.02562 * 12 10 8
14 14 H 1.48505 * 109.47188 * 299.99997 * 12 10 8
15 15 H 1.48503 * 109.47200 * 60.00181 * 12 10 8
16 16 O 1.42898 * 109.47355 * 293.29355 * 6 5 2
17 17 C 1.36096 * 117.00120 * 156.32726 * 16 6 5
18 18 C 1.35433 * 120.41102 * 4.97768 * 17 16 6
19 19 N 1.35871 * 120.60487 * 179.76472 * 18 17 16
20 20 H 0.96995 * 119.26770 * 180.24690 * 19 18 17
21 21 C 1.35467 * 121.46532 * 0.52699 * 19 18 17
22 22 C 1.35188 * 120.79055 * 359.73763 * 21 19 18
23 23 C 1.41280 * 119.32249 * 0.02562 * 22 21 19
24 24 O 1.22298 * 120.67692 * 180.02562 * 23 22 21
25 25 H 1.09002 * 109.47231 * 288.92298 * 1 2 3
26 26 H 1.08998 * 109.47396 * 48.92907 * 1 2 3
27 27 H 1.09003 * 109.46749 * 168.92873 * 1 2 3
28 28 H 1.08994 * 109.47247 * 179.97438 * 3 2 1
29 29 H 1.08997 * 109.47341 * 299.99907 * 3 2 1
30 30 H 1.09001 * 109.47601 * 59.99645 * 3 2 1
31 31 H 1.08993 * 109.47152 * 307.03022 * 4 2 1
32 32 H 1.08991 * 109.47435 * 67.03797 * 4 2 1
33 33 H 1.09005 * 109.47015 * 187.03944 * 4 2 1
34 34 H 1.09008 * 109.46945 * 302.90344 * 5 2 1
35 35 H 1.09000 * 109.47549 * 182.90680 * 5 2 1
36 36 H 0.97007 * 120.00208 * 358.31027 * 11 10 8
37 37 H 1.07994 * 119.69930 * 0.02562 * 18 17 16
38 38 H 1.07997 * 119.60164 * 179.71846 * 21 19 18
39 39 H 1.07997 * 120.34304 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9586 1.3850 0.0000
4 6 1.9587 -0.6924 -1.1994
5 6 1.9587 -0.6924 1.1994
6 6 1.5093 -2.1545 1.1635
7 1 1.8131 -2.6048 0.2186
8 6 2.1464 -2.9041 2.3051
9 1 1.5315 -3.3094 3.0950
10 6 3.5145 -3.0724 2.3411
11 7 4.2511 -2.6899 1.3210
12 14 4.3214 -3.8437 3.8388
13 1 5.7902 -3.9111 3.6301
14 1 4.0298 -3.0183 5.0384
15 1 3.7859 -5.2143 4.0390
16 8 0.0870 -2.2188 1.2864
17 6 -0.5261 -3.3294 0.7937
18 6 0.2075 -4.3594 0.3088
19 7 -0.4004 -5.4721 -0.1796
20 1 0.1440 -6.1997 -0.5188
21 6 -1.7500 -5.5855 -0.2084
22 6 -2.5382 -4.5902 0.2560
23 6 -1.9411 -3.4201 0.7758
24 8 -2.6304 -2.5046 1.2029
25 1 -0.3634 0.3333 0.9721
26 1 -0.3634 0.6751 -0.7747
27 1 -0.3633 -1.0086 -0.1974
28 1 3.0486 1.3851 0.0005
29 1 1.5953 1.8989 -0.8900
30 1 1.5953 1.8989 0.8899
31 1 1.4964 -1.6773 -1.2646
32 1 1.7019 -0.1111 -2.0849
33 1 3.0415 -0.8028 -1.1386
34 1 1.5535 -0.2094 2.0887
35 1 3.0475 -0.6475 1.2259
36 1 3.8299 -2.3119 0.5332
37 1 1.2857 -4.2975 0.3141
38 1 -2.2016 -6.4817 -0.6074
39 1 -3.6134 -4.6881 0.2292
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001229511048.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:53:57
Heat of formation + Delta-G solvation = 60.375296 kcal
Electronic energy + Delta-G solvation = -22023.171873 eV
Core-core repulsion = 18857.316091 eV
Total energy + Delta-G solvation = -3165.855782 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 267.150 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-43.07976 -41.82186 -39.16855 -38.59152 -35.80646 -32.34029 -32.03786 -30.75272
-29.75319 -29.59446 -27.81642 -25.42986 -24.36385 -24.08837 -22.51165 -20.57683
-19.73724 -18.57212 -18.24094 -17.96908 -17.74008 -17.33874 -17.12218 -16.52870
-15.80687 -15.64243 -15.26191 -14.84219 -14.54667 -14.29389 -14.07038 -13.98330
-13.81376 -13.55200 -13.44415 -13.38990 -13.28715 -13.21705 -13.18639 -12.83837
-12.66108 -12.12377 -12.02620 -11.08268 -10.72627 -10.50121 -10.14774 -8.86170
-8.58909 -6.68120 0.29321 0.42140 0.79598 1.48685 1.60452 1.72885
1.98056 2.23623 2.36906 2.66462 2.74786 2.88006 2.92282 3.02936
3.57701 3.74111 3.87748 3.90336 4.03728 4.03850 4.10490 4.15277
4.23749 4.26936 4.32644 4.43093 4.45512 4.55844 4.67521 4.70431
4.77693 4.84251 5.03509 5.31431 5.43878 5.83236 5.88137 6.17915
6.36763 6.42691 6.98379 7.12595 8.56134
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.036 4.036
2 N -0.257 5.257
3 C -0.046 4.046
4 C -0.050 4.050
5 C 0.008 3.992
6 C 0.181 3.819
7 H 0.056 0.944
8 C -0.626 4.626
9 H 0.041 0.959
10 C 0.027 3.973
11 N -0.905 5.905
12 Si 1.078 2.922
13 H -0.289 1.289
14 H -0.283 1.283
15 H -0.285 1.285
16 O -0.306 6.306
17 C -0.052 4.052
18 C 0.043 3.957
19 N -0.550 5.550
20 H 0.443 0.557
21 C 0.179 3.821
22 C -0.335 4.335
23 C 0.375 3.625
24 O -0.586 6.586
25 H 0.102 0.898
26 H 0.143 0.857
27 H 0.099 0.901
28 H 0.121 0.879
29 H 0.146 0.854
30 H 0.117 0.883
31 H 0.097 0.903
32 H 0.153 0.847
33 H 0.119 0.881
34 H 0.118 0.882
35 H 0.133 0.867
36 H 0.277 0.723
37 H 0.175 0.825
38 H 0.221 0.779
39 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.562 5.804 -13.716 15.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 N 0.086 4.914
3 C -0.187 4.187
4 C -0.191 4.191
5 C -0.113 4.113
6 C 0.125 3.875
7 H 0.073 0.927
8 C -0.665 4.665
9 H 0.059 0.941
10 C -0.179 4.179
11 N -0.540 5.540
12 Si 0.905 3.095
13 H -0.214 1.214
14 H -0.209 1.209
15 H -0.211 1.211
16 O -0.220 6.220
17 C -0.102 4.102
18 C -0.084 4.084
19 N -0.158 5.158
20 H 0.284 0.716
21 C 0.046 3.954
22 C -0.360 4.360
23 C 0.272 3.728
24 O -0.479 6.479
25 H 0.121 0.879
26 H 0.161 0.839
27 H 0.117 0.883
28 H 0.140 0.860
29 H 0.164 0.836
30 H 0.136 0.864
31 H 0.116 0.884
32 H 0.171 0.829
33 H 0.137 0.863
34 H 0.137 0.863
35 H 0.151 0.849
36 H 0.089 0.911
37 H 0.192 0.808
38 H 0.237 0.763
39 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -1.470 6.059 -12.750 14.193
hybrid contribution -0.954 -0.251 0.024 0.987
sum -2.423 5.808 -12.726 14.197
Atomic orbital electron populations
1.24222 0.76242 1.08640 1.08654 1.45981 1.15140 1.15885 1.14438
1.24305 1.05700 0.78558 1.10089 1.24252 1.05308 1.01895 0.87675
1.24242 1.04409 0.94695 0.88002 1.20430 0.76791 0.91951 0.98346
0.92728 1.22321 0.94638 1.39192 1.10313 0.94101 1.26030 0.94215
0.95044 1.02625 1.71132 1.39092 1.38673 1.05150 0.83277 0.75756
0.76562 0.73884 1.21432 1.20944 1.21074 1.86160 1.22088 1.36076
1.77641 1.20244 0.93955 0.90717 1.05307 1.21989 0.99585 0.87375
0.99489 1.41101 1.06805 1.16944 1.50987 0.71650 1.22529 0.81783
0.99796 0.91256 1.22074 1.02322 0.96760 1.14842 1.17524 0.86745
0.88773 0.79732 1.90778 1.66501 1.42575 1.48006 0.87896 0.83878
0.88261 0.86030 0.83559 0.86393 0.88412 0.82892 0.86250 0.86345
0.84878 0.91142 0.80785 0.76265 0.82867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.04 0.54 7.06 127.69 0.90 1.44 16
2 N -0.26 4.66 0.05 ******* -0.07 4.59 16
3 C -0.05 1.16 7.98 127.69 1.02 2.18 16
4 C -0.05 1.03 7.49 127.69 0.96 1.98 16
5 C 0.01 -0.05 3.47 86.30 0.30 0.25 16
6 C 0.18 0.68 0.84 29.85 0.03 0.71 16
7 H 0.06 0.02 3.68 -2.39 -0.01 0.01 16
8 C -0.63 -9.88 7.79 25.60 0.20 -9.68 16
9 H 0.04 0.94 7.82 -2.91 -0.02 0.92 16
10 C 0.03 0.48 5.20 84.66 0.44 0.92 16
11 N -0.90 -15.33 12.90 21.45 0.28 -15.05 16
12 Si 1.08 19.21 29.91 68.60 2.05 21.26 16
13 H -0.29 -5.80 7.11 99.48 0.71 -5.09 16
14 H -0.28 -5.17 7.11 99.48 0.71 -4.47 16
15 H -0.28 -5.21 7.11 99.48 0.71 -4.51 16
16 O -0.31 -2.25 6.62 -79.75 -0.53 -2.78 16
17 C -0.05 -0.38 6.09 22.50 0.14 -0.25 16
18 C 0.04 0.03 9.88 83.42 0.82 0.86 16
19 N -0.55 3.98 5.25 -194.90 -1.02 2.96 16
20 H 0.44 -6.53 8.90 -92.71 -0.83 -7.35 16
21 C 0.18 -1.31 11.16 83.43 0.93 -0.37 16
22 C -0.34 -0.92 10.00 22.31 0.22 -0.70 16
23 C 0.37 4.35 6.77 23.90 0.16 4.51 16
24 O -0.59 -12.22 17.72 8.59 0.15 -12.07 16
25 H 0.10 -1.14 7.93 -2.39 -0.02 -1.16 16
26 H 0.14 -3.26 7.97 -2.39 -0.02 -3.28 16
27 H 0.10 -0.75 5.20 -2.39 -0.01 -0.76 16
28 H 0.12 -3.05 8.13 -2.39 -0.02 -3.07 16
29 H 0.15 -4.51 8.01 -2.39 -0.02 -4.53 16
30 H 0.12 -2.89 8.14 -2.39 -0.02 -2.91 16
31 H 0.10 -1.62 6.14 -2.39 -0.01 -1.64 16
32 H 0.15 -4.28 8.05 -2.39 -0.02 -4.30 16
33 H 0.12 -2.32 8.03 -2.38 -0.02 -2.34 16
34 H 0.12 -0.51 8.00 -2.38 -0.02 -0.52 16
35 H 0.13 -0.45 6.21 -2.39 -0.01 -0.46 16
36 H 0.28 2.78 6.02 -92.70 -0.56 2.22 16
37 H 0.18 0.28 5.59 -2.91 -0.02 0.27 16
38 H 0.22 -3.89 8.06 -2.91 -0.02 -3.91 16
39 H 0.15 0.27 8.06 -2.91 -0.02 0.24 16
Total: 0.00 -53.30 307.41 7.43 -45.88
By element:
Atomic # 1 Polarization: -47.09 SS G_CDS: 0.45 Total: -46.64 kcal
Atomic # 6 Polarization: -4.26 SS G_CDS: 6.12 Total: 1.85 kcal
Atomic # 7 Polarization: -6.69 SS G_CDS: -0.82 Total: -7.50 kcal
Atomic # 8 Polarization: -14.47 SS G_CDS: -0.38 Total: -14.85 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: 2.05 Total: 21.26 kcal
Total: -53.30 7.43 -45.88 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001229511048.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.252 kcal
(2) G-P(sol) polarization free energy of solvation -53.301 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds