Wall clock time and date at job start Mon Mar 30 2020 00:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46794 * 2 1 4 4 C 1.53004 * 109.47162 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00217 * 269.99526 * 5 4 3 7 7 H 1.08005 * 119.99632 * 321.97556 * 6 5 4 8 8 C 1.38813 * 120.00333 * 141.96659 * 6 5 4 9 9 N 1.31616 * 120.00068 * 160.65214 * 8 6 5 10 10 Si 1.86801 * 119.99866 * 340.65435 * 8 6 5 11 11 H 1.48503 * 109.47150 * 95.28843 * 10 8 6 12 12 H 1.48499 * 109.46969 * 215.28806 * 10 8 6 13 13 H 1.48505 * 109.47024 * 335.28740 * 10 8 6 14 14 C 1.46500 * 120.00293 * 90.00555 * 5 4 3 15 15 C 1.50696 * 109.47496 * 86.32991 * 14 5 4 16 16 C 1.33390 * 125.20058 * 94.11137 * 15 14 5 17 17 C 1.38425 * 114.91636 * 179.85825 * 16 15 14 18 18 C 1.33387 * 114.92469 * 0.43154 * 17 16 15 19 19 C 1.50702 * 125.20560 * 179.78754 * 18 17 16 20 20 C 1.53004 * 109.46799 * 90.00311 * 19 18 17 21 21 S 1.75882 * 125.20242 * 274.41784 * 15 14 5 22 22 H 1.08999 * 109.46794 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47383 * 299.99961 * 1 2 3 24 24 H 1.08998 * 109.47183 * 60.00472 * 1 2 3 25 25 H 1.09002 * 109.46968 * 240.00305 * 2 1 3 26 26 H 1.09002 * 109.47006 * 119.99999 * 2 1 3 27 27 H 1.08998 * 109.47124 * 59.99880 * 3 2 1 28 28 H 1.09002 * 109.47344 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.46788 * 60.00189 * 4 3 2 30 30 H 1.09002 * 109.46817 * 300.00109 * 4 3 2 31 31 H 0.97001 * 120.00154 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.47021 * 206.33549 * 14 5 4 33 33 H 1.09003 * 109.46532 * 326.32608 * 14 5 4 34 34 H 1.07998 * 122.54284 * 0.02622 * 16 15 14 35 35 H 1.08003 * 122.53595 * 180.20523 * 17 16 15 36 36 H 1.08996 * 109.47108 * 209.99900 * 19 18 17 37 37 H 1.09003 * 109.47052 * 330.00728 * 19 18 17 38 38 H 1.08996 * 109.47275 * 300.00125 * 20 19 18 39 39 H 1.08999 * 109.47216 * 59.99911 * 20 19 18 40 40 H 1.08991 * 109.47032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4701 -1.1856 7 1 4.7062 2.9315 -2.0221 8 6 3.9765 4.8173 -1.3124 9 7 4.5224 5.5302 -2.2748 10 14 2.7853 5.6185 -0.1172 11 1 3.5467 6.2669 0.9806 12 1 1.9797 6.6410 -0.8319 13 1 1.8826 4.5846 0.4498 14 6 4.3029 3.5137 1.2690 15 6 5.6974 3.2035 1.7486 16 6 6.7757 3.9530 1.5142 17 6 7.9524 3.4684 2.0590 18 6 7.8313 2.3209 2.7281 19 6 8.9595 1.5881 3.4074 20 6 9.0871 2.0753 4.8522 21 16 6.1535 1.7940 2.6967 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9289 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 4.3065 6.4717 -2.3631 32 1 4.1994 4.5891 1.1238 33 1 3.5798 3.1760 2.0114 34 1 6.7334 4.8698 0.9449 35 1 8.8976 3.9789 1.9474 36 1 8.7530 0.5179 3.4018 37 1 9.8909 1.7814 2.8752 38 1 9.2935 3.1455 4.8578 39 1 8.1557 1.8821 5.3844 40 1 9.9033 1.5457 5.3434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231502708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:26 Heat of formation + Delta-G solvation = 29.043186 kcal Electronic energy + Delta-G solvation = -18345.861408 eV Core-core repulsion = 15673.170007 eV Total energy + Delta-G solvation = -2672.691402 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -37.76578 -36.49772 -34.33898 -33.31020 -31.62018 -29.56797 -27.82480 -25.72084 -24.10542 -23.12210 -21.74885 -21.09014 -20.10267 -18.35497 -17.12320 -16.05694 -15.40592 -14.90949 -14.61845 -14.41942 -14.04686 -13.70364 -13.49839 -13.08296 -12.63084 -12.56818 -12.41020 -12.13717 -11.94471 -11.77253 -11.47237 -11.36436 -11.06059 -10.90726 -10.83308 -10.70691 -10.56605 -10.34929 -10.28703 -9.88081 -9.85379 -9.55806 -8.60830 -7.91933 -7.84105 -6.92507 -6.03470 -3.46208 1.58043 2.18169 2.59185 3.24936 3.37405 3.43868 3.46669 4.46032 4.96515 4.99623 5.13259 5.21729 5.35280 5.36133 5.49967 5.54702 5.64344 5.66398 5.82944 5.89053 5.90048 5.98769 6.11942 6.13457 6.18259 6.24743 6.27129 6.30772 6.33902 6.40936 6.50373 6.59695 6.78307 6.88976 7.02900 7.06806 7.18649 7.99748 8.34898 8.90660 9.64347 10.04285 11.11663 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.006948 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.151932 B = 4028.746101 C = 5341.909697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.151 3.849 5 N -0.592 5.592 6 C -0.262 4.262 7 H 0.080 0.920 8 C 0.038 3.962 9 N -0.898 5.898 10 Si 0.872 3.128 11 H -0.284 1.284 12 H -0.300 1.300 13 H -0.264 1.264 14 C 0.195 3.805 15 C -0.149 4.149 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.201 4.201 19 C -0.046 4.046 20 C -0.146 4.146 21 S 0.057 5.943 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.317 -8.102 11.145 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.025 3.975 5 N -0.312 5.312 6 C -0.390 4.390 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.539 5.539 10 Si 0.702 3.298 11 H -0.213 1.213 12 H -0.228 1.228 13 H -0.189 1.189 14 C 0.067 3.933 15 C -0.269 4.269 16 C -0.172 4.172 17 C -0.154 4.154 18 C -0.318 4.318 19 C -0.085 4.085 20 C -0.203 4.203 21 S 0.320 5.680 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.520 -9.176 11.590 14.861 hybrid contribution 0.172 1.897 -0.135 1.910 sum 1.693 -7.279 11.454 13.677 Atomic orbital electron populations 1.21765 0.96662 1.00648 1.01636 1.21497 0.95174 0.98049 1.01296 1.22199 0.98888 0.94840 1.02002 1.20936 0.91305 0.85991 0.99271 1.44176 1.73937 1.11749 1.01379 1.18794 1.36630 0.93460 0.90160 0.90275 1.25460 0.97641 0.96897 0.96332 1.69838 1.42538 1.07474 1.34002 0.87001 0.83053 0.79102 0.80649 1.21262 1.22770 1.18850 1.19948 0.87467 0.97806 0.88047 1.25861 1.02681 0.96793 1.01568 1.20057 0.91301 1.02793 1.03034 1.20018 0.99209 0.96146 1.00065 1.24219 0.97728 1.01080 1.08732 1.19970 0.94866 0.98513 0.95172 1.21778 1.01532 1.01488 0.95539 1.83879 1.02105 1.27891 1.54156 0.93471 0.93181 0.92862 0.92294 0.92718 0.93217 0.91566 0.92902 0.94344 0.92627 0.90768 0.93282 0.84552 0.85374 0.91406 0.90695 0.92474 0.92608 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.14 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 3.00 5.69 -4.04 -0.02 2.98 16 5 N -0.59 -13.85 2.07 -174.61 -0.36 -14.21 16 6 C -0.26 -7.15 9.94 -15.06 -0.15 -7.30 16 7 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 8 C 0.04 1.06 5.33 -17.43 -0.09 0.96 16 9 N -0.90 -26.89 13.97 55.49 0.78 -26.11 16 10 Si 0.87 21.68 24.85 -169.99 -4.22 17.46 16 11 H -0.28 -6.90 6.70 56.52 0.38 -6.52 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 13 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.20 4.28 4.83 -5.20 -0.03 4.26 16 15 C -0.15 -3.03 6.09 -36.00 -0.22 -3.25 16 16 C -0.14 -2.86 10.05 -41.21 -0.41 -3.27 16 17 C -0.12 -2.11 10.05 -41.21 -0.41 -2.53 16 18 C -0.20 -3.16 5.76 -36.00 -0.21 -3.37 16 19 C -0.05 -0.55 6.43 -27.88 -0.18 -0.73 16 20 C -0.15 -1.52 9.89 37.16 0.37 -1.16 16 21 S 0.06 0.97 23.27 -107.50 -2.50 -1.53 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.04 0.71 8.03 -51.93 -0.42 0.29 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.07 1.77 3.28 -51.92 -0.17 1.60 16 33 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.14 2.91 8.06 -52.49 -0.42 2.49 16 35 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -29.06 338.17 -9.44 -38.49 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.92 Total: 0.36 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -1.30 Total: -19.56 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.41 Total: -40.32 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.22 Total: 17.46 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.50 Total: -1.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.06 -9.44 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231502708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.538 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds