Wall clock time and date at job start Mon Mar 30 2020 00:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46794 * 2 1 4 4 C 1.53004 * 109.47162 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00217 * 269.99526 * 5 4 3 7 7 H 1.08005 * 119.99632 * 321.97556 * 6 5 4 8 8 C 1.38813 * 120.00333 * 141.96659 * 6 5 4 9 9 N 1.31616 * 120.00068 * 160.65214 * 8 6 5 10 10 Si 1.86801 * 119.99866 * 340.65435 * 8 6 5 11 11 H 1.48503 * 109.47150 * 95.28843 * 10 8 6 12 12 H 1.48499 * 109.46969 * 215.28806 * 10 8 6 13 13 H 1.48505 * 109.47024 * 335.28740 * 10 8 6 14 14 C 1.46500 * 120.00293 * 90.00555 * 5 4 3 15 15 C 1.50696 * 109.47496 * 86.32991 * 14 5 4 16 16 C 1.33390 * 125.20058 * 94.11137 * 15 14 5 17 17 C 1.38425 * 114.91636 * 179.85825 * 16 15 14 18 18 C 1.33387 * 114.92469 * 0.43154 * 17 16 15 19 19 C 1.50702 * 125.20560 * 179.78754 * 18 17 16 20 20 C 1.53004 * 109.46799 * 90.00311 * 19 18 17 21 21 S 1.75882 * 125.20242 * 274.41784 * 15 14 5 22 22 H 1.08999 * 109.46794 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47383 * 299.99961 * 1 2 3 24 24 H 1.08998 * 109.47183 * 60.00472 * 1 2 3 25 25 H 1.09002 * 109.46968 * 240.00305 * 2 1 3 26 26 H 1.09002 * 109.47006 * 119.99999 * 2 1 3 27 27 H 1.08998 * 109.47124 * 59.99880 * 3 2 1 28 28 H 1.09002 * 109.47344 * 299.99793 * 3 2 1 29 29 H 1.09002 * 109.46788 * 60.00189 * 4 3 2 30 30 H 1.09002 * 109.46817 * 300.00109 * 4 3 2 31 31 H 0.97001 * 120.00154 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.47021 * 206.33549 * 14 5 4 33 33 H 1.09003 * 109.46532 * 326.32608 * 14 5 4 34 34 H 1.07998 * 122.54284 * 0.02622 * 16 15 14 35 35 H 1.08003 * 122.53595 * 180.20523 * 17 16 15 36 36 H 1.08996 * 109.47108 * 209.99900 * 19 18 17 37 37 H 1.09003 * 109.47052 * 330.00728 * 19 18 17 38 38 H 1.08996 * 109.47275 * 300.00125 * 20 19 18 39 39 H 1.08999 * 109.47216 * 59.99911 * 20 19 18 40 40 H 1.08991 * 109.47032 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.2859 3.4701 -1.1856 7 1 4.7062 2.9315 -2.0221 8 6 3.9765 4.8173 -1.3124 9 7 4.5224 5.5302 -2.2748 10 14 2.7853 5.6185 -0.1172 11 1 3.5467 6.2669 0.9806 12 1 1.9797 6.6410 -0.8319 13 1 1.8826 4.5846 0.4498 14 6 4.3029 3.5137 1.2690 15 6 5.6974 3.2035 1.7486 16 6 6.7757 3.9530 1.5142 17 6 7.9524 3.4684 2.0590 18 6 7.8313 2.3209 2.7281 19 6 8.9595 1.5881 3.4074 20 6 9.0871 2.0753 4.8522 21 16 6.1535 1.7940 2.6967 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9289 -0.8909 30 1 3.9337 0.9286 0.8891 31 1 4.3065 6.4717 -2.3631 32 1 4.1994 4.5891 1.1238 33 1 3.5798 3.1760 2.0114 34 1 6.7334 4.8698 0.9449 35 1 8.8976 3.9789 1.9474 36 1 8.7530 0.5179 3.4018 37 1 9.8909 1.7814 2.8752 38 1 9.2935 3.1455 4.8578 39 1 8.1557 1.8821 5.3844 40 1 9.9033 1.5457 5.3434 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231502708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:25 Heat of formation + Delta-G solvation = 14.840540 kcal Electronic energy + Delta-G solvation = -18346.477281 eV Core-core repulsion = 15673.170007 eV Total energy + Delta-G solvation = -2673.307275 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.27474 -38.07925 -35.68726 -34.61068 -33.57684 -30.95516 -29.37541 -27.22349 -25.75159 -24.46342 -22.98391 -22.55050 -21.66018 -19.87314 -18.94595 -17.55011 -17.25629 -16.34838 -16.09614 -16.02459 -15.24279 -14.97985 -14.84233 -14.63363 -14.34644 -13.96579 -13.83406 -13.50578 -13.43431 -13.12622 -12.88665 -12.67152 -12.59090 -12.42194 -12.19806 -11.98891 -11.92124 -11.80034 -11.74972 -11.55599 -11.40503 -11.30639 -10.71551 -9.31540 -9.26516 -8.85462 -8.21983 -5.62393 0.15707 0.78904 1.14903 1.25113 1.37095 1.47475 1.90233 2.37201 3.06182 3.35139 3.88179 4.04032 4.13241 4.18519 4.24120 4.36472 4.40011 4.47476 4.51667 4.57686 4.63318 4.74563 4.81147 4.93384 4.96719 5.02941 5.03344 5.06060 5.10894 5.16952 5.36918 5.37841 5.38092 5.46972 5.55481 5.58236 5.72391 5.91586 6.15013 6.91831 7.56259 7.99150 8.97426 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.015262 B = 0.006948 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.151932 B = 4028.746101 C = 5341.909697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.603 5.603 6 C -0.248 4.248 7 H 0.039 0.961 8 C -0.013 4.013 9 N -0.947 5.947 10 Si 0.933 3.067 11 H -0.277 1.277 12 H -0.307 1.307 13 H -0.250 1.250 14 C 0.196 3.804 15 C -0.187 4.187 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.180 4.180 19 C -0.048 4.048 20 C -0.142 4.142 21 S 0.098 5.902 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -10.222 14.028 17.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.025 3.975 5 N -0.325 5.325 6 C -0.378 4.378 7 H 0.057 0.943 8 C -0.210 4.210 9 N -0.591 5.591 10 Si 0.762 3.238 11 H -0.205 1.205 12 H -0.236 1.236 13 H -0.174 1.174 14 C 0.069 3.931 15 C -0.307 4.307 16 C -0.182 4.182 17 C -0.175 4.175 18 C -0.298 4.298 19 C -0.088 4.088 20 C -0.200 4.200 21 S 0.361 5.639 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.167 0.833 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.752 -11.333 14.510 18.494 hybrid contribution 0.247 2.429 -0.971 2.627 sum 1.998 -8.904 13.538 16.327 Atomic orbital electron populations 1.21749 0.95278 1.02091 1.01428 1.21452 0.96360 0.95311 1.02289 1.22078 0.97257 0.97289 1.00536 1.21053 0.92625 0.84160 0.99708 1.44240 1.74894 1.12713 1.00632 1.18576 1.35074 0.93333 0.90822 0.94346 1.25993 0.99185 0.97562 0.98265 1.69962 1.44651 1.07778 1.36699 0.86009 0.80882 0.78211 0.78729 1.20471 1.23566 1.17383 1.19829 0.89226 0.96429 0.87655 1.25595 1.01781 0.99349 1.03985 1.20133 0.92913 1.02149 1.02994 1.20112 0.99023 0.97263 1.01056 1.24807 0.98178 1.00166 1.06603 1.20181 0.93834 0.98762 0.95989 1.21760 1.02366 1.01607 0.94295 1.83608 1.02642 1.25178 1.52453 0.91206 0.92891 0.93644 0.92037 0.90978 0.93366 0.94284 0.93940 0.92277 0.92819 0.93076 0.91231 0.87226 0.83338 0.90087 0.89091 0.92816 0.93016 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -3.09 5.93 30.59 0.18 -2.90 16 3 C -0.13 -4.64 5.54 30.59 0.17 -4.48 16 4 C 0.15 5.86 5.69 86.38 0.49 6.35 16 5 N -0.60 -28.52 2.07 -706.33 -1.46 -29.99 16 6 C -0.25 -14.14 9.94 84.03 0.84 -13.31 16 7 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 8 C -0.01 -0.79 5.33 84.86 0.45 -0.33 16 9 N -0.95 -59.46 13.97 21.65 0.30 -59.16 16 10 Si 0.93 46.24 24.85 68.60 1.70 47.94 16 11 H -0.28 -13.26 6.70 99.48 0.67 -12.59 16 12 H -0.31 -15.43 7.11 99.48 0.71 -14.73 16 13 H -0.25 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.20 8.54 4.83 85.63 0.41 8.95 16 15 C -0.19 -7.53 6.09 24.59 0.15 -7.38 16 16 C -0.15 -6.14 10.05 21.22 0.21 -5.93 16 17 C -0.14 -4.76 10.05 21.22 0.21 -4.55 16 18 C -0.18 -5.19 5.76 24.59 0.14 -5.05 16 19 C -0.05 -0.98 6.43 29.85 0.19 -0.78 16 20 C -0.14 -2.42 9.89 71.98 0.71 -1.71 16 21 S 0.10 3.09 23.27 -56.49 -1.31 1.77 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.73 8.04 -2.39 -0.02 1.71 16 30 H 0.06 2.06 8.03 -2.39 -0.02 2.04 16 31 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.05 2.45 3.28 -2.38 -0.01 2.44 16 33 H 0.07 2.69 8.10 -2.39 -0.02 2.67 16 34 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.36 338.17 5.05 -60.30 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.94 Total: 12.97 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 4.88 Total: -33.84 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -1.16 Total: -89.14 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.70 Total: 47.94 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.77 kcal Total: -65.36 5.05 -60.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231502708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.145 kcal (2) G-P(sol) polarization free energy of solvation -65.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds