Wall clock time and date at job start Mon Mar 30 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 N 1.46892 * 109.47090 * 174.56887 * 3 2 1 5 5 C 1.46906 * 110.99901 * 195.81401 * 4 3 2 6 6 C 1.50697 * 109.47110 * 66.04483 * 5 4 3 7 7 H 1.07997 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99736 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99996 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99999 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47278 * 89.99628 * 10 8 6 12 12 H 1.48500 * 109.47081 * 209.99699 * 10 8 6 13 13 H 1.48498 * 109.47165 * 329.99781 * 10 8 6 14 14 C 1.46903 * 111.00308 * 71.86078 * 4 3 2 15 15 C 1.50702 * 109.47353 * 199.23738 * 14 4 3 16 16 C 1.39374 * 120.47228 * 83.65934 * 15 14 4 17 17 N 1.39175 * 120.85317 * 0.02788 * 16 15 14 18 18 C 1.39532 * 118.29235 * 180.02562 * 16 15 14 19 19 C 1.37842 * 119.13293 * 359.97438 * 18 16 15 20 20 N 1.32027 * 120.86947 * 0.02562 * 19 18 16 21 21 C 1.32189 * 121.87646 * 359.70130 * 20 19 18 22 22 F 1.35102 * 119.61618 * 180.31014 * 21 20 19 23 23 H 1.09002 * 109.46853 * 300.00325 * 1 2 3 24 24 H 1.09004 * 109.47067 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47116 * 240.00123 * 2 1 3 27 27 H 1.08995 * 109.47134 * 120.00308 * 2 1 3 28 28 H 1.08998 * 109.46931 * 54.56601 * 3 2 1 29 29 H 1.09005 * 109.47052 * 294.56913 * 3 2 1 30 30 H 1.09003 * 109.47011 * 186.04839 * 5 4 3 31 31 H 1.08998 * 109.46653 * 306.04140 * 5 4 3 32 32 H 0.96993 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46439 * 319.23608 * 14 4 3 34 34 H 1.08993 * 109.47512 * 79.23374 * 14 4 3 35 35 H 0.96996 * 120.00084 * 359.97438 * 17 16 15 36 36 H 0.97004 * 119.99709 * 179.97438 * 17 16 15 37 37 H 1.08005 * 120.43260 * 179.97438 * 18 16 15 38 38 H 1.07996 * 119.56481 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5032 1.4445 0.1311 5 6 3.9960 2.7760 0.5085 6 6 3.5114 3.1168 1.8941 7 1 2.8990 2.4145 2.4400 8 6 3.8509 4.3249 2.4654 9 7 3.4276 4.6227 3.6744 10 14 4.9109 5.5394 1.5215 11 1 4.0406 6.4423 0.7262 12 1 5.7148 6.3422 2.4777 13 1 5.8199 4.7990 0.6101 14 6 4.1433 0.9774 -1.1059 15 6 5.5553 0.5433 -0.8079 16 6 5.8135 -0.7372 -0.3220 17 7 4.7770 -1.6398 -0.1027 18 6 7.1377 -1.0910 -0.0611 19 6 8.1365 -0.1694 -0.2916 20 7 7.8536 1.0350 -0.7527 21 6 6.6133 1.4075 -1.0175 22 9 6.3764 2.6494 -1.4939 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5995 1.9836 0.8373 29 1 1.7583 1.9275 -0.9347 30 1 5.0860 2.7774 0.4941 31 1 3.6224 3.5158 -0.1994 32 1 3.6667 5.4723 4.0764 33 1 3.5817 0.1349 -1.5097 34 1 4.1583 1.7870 -1.8354 35 1 3.8609 -1.3807 -0.2880 36 1 4.9709 -2.5281 0.2354 37 1 7.3771 -2.0742 0.3166 38 1 9.1638 -0.4357 -0.0917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238155959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:38 Heat of formation + Delta-G solvation = -8.133029 kcal Electronic energy + Delta-G solvation = -21081.468046 eV Core-core repulsion = 17873.244137 eV Total energy + Delta-G solvation = -3208.223908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.60142 -39.97457 -37.33700 -35.21252 -33.25770 -32.47001 -30.88619 -29.82579 -27.95735 -26.23008 -24.18778 -22.74182 -22.03004 -21.13621 -19.80259 -17.95311 -17.90177 -16.88046 -15.90522 -15.66770 -15.30745 -15.10600 -14.73813 -14.58929 -14.30577 -13.74180 -13.43385 -13.17041 -12.98053 -12.83841 -12.40030 -12.26747 -11.92411 -11.66263 -11.44469 -11.32825 -11.10749 -10.81083 -10.67162 -10.31789 -9.99999 -9.75942 -9.36826 -9.21672 -8.63041 -8.53609 -7.92751 -7.45011 -6.02520 -3.99578 1.24182 1.66032 3.34122 3.42128 3.51317 3.67335 3.93060 4.06898 4.48113 4.71541 4.81897 4.95965 5.15743 5.28000 5.31551 5.40783 5.49858 5.56473 5.68774 5.82936 5.94097 5.96174 6.00206 6.08724 6.12076 6.18954 6.35017 6.55427 6.68781 6.83713 6.92891 6.99785 7.34640 7.63197 7.70422 7.86335 8.01618 8.05936 8.66098 9.04473 9.60229 11.10208 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.009292 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.431149 B = 3012.492104 C = 4499.549627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.521 5.521 5 C 0.163 3.837 6 C -0.508 4.508 7 H 0.080 0.920 8 C 0.071 3.929 9 N -0.901 5.901 10 Si 0.866 3.134 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.261 1.261 14 C 0.097 3.903 15 C -0.215 4.215 16 C 0.296 3.704 17 N -0.851 5.851 18 C -0.268 4.268 19 C 0.166 3.834 20 N -0.558 5.558 21 C 0.351 3.649 22 F -0.111 7.111 23 H 0.058 0.942 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.021 0.979 30 H 0.030 0.970 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.406 0.594 36 H 0.400 0.600 37 H 0.135 0.865 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 -14.098 -10.035 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.244 5.244 5 C 0.037 3.963 6 C -0.546 4.546 7 H 0.098 0.902 8 C -0.131 4.131 9 N -0.540 5.540 10 Si 0.693 3.307 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.185 1.185 14 C -0.031 4.031 15 C -0.225 4.225 16 C 0.180 3.820 17 N -0.390 5.390 18 C -0.294 4.294 19 C 0.010 3.990 20 N -0.277 5.277 21 C 0.198 3.802 22 F -0.090 7.090 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.002 0.998 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.237 0.763 36 H 0.229 0.771 37 H 0.153 0.847 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.574 -13.598 -9.690 16.895 hybrid contribution -0.554 0.819 -0.788 1.265 sum 2.020 -12.779 -10.478 16.649 Atomic orbital electron populations 1.21720 0.96057 1.00945 1.01978 1.21590 0.95179 0.97893 1.01183 1.22127 0.88405 0.95562 1.01025 1.62084 1.04479 1.29641 1.28240 1.20208 0.95983 0.83626 0.96496 1.20988 1.32574 1.02540 0.98485 0.90171 1.24856 0.95642 0.97831 0.94758 1.69884 1.45978 1.23533 1.14565 0.86972 0.81510 0.81832 0.80363 1.20312 1.21127 1.18505 1.20727 0.90067 0.99334 0.93004 1.19882 0.96480 0.94185 1.11941 1.17449 0.88458 0.88098 0.88003 1.42436 1.07944 1.15298 1.73288 1.21501 0.91597 1.03013 1.13252 1.22058 0.99263 0.86375 0.91341 1.67041 1.20628 1.20304 1.19680 1.17659 0.89103 0.80319 0.93087 1.91606 1.94159 1.38561 1.84707 0.92292 0.93157 0.93224 0.93467 0.91248 0.88705 0.96118 0.95237 0.99793 0.92716 0.91018 0.93984 0.76286 0.77138 0.84696 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.65 5.29 -26.73 -0.14 -1.79 16 3 C 0.06 1.02 4.80 -3.83 -0.02 1.00 16 4 N -0.52 -10.52 4.38 -237.52 -1.04 -11.55 16 5 C 0.16 4.06 3.56 -4.97 -0.02 4.04 16 6 C -0.51 -14.58 8.84 -34.44 -0.30 -14.88 16 7 H 0.08 2.47 7.50 -52.49 -0.39 2.08 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 10 Si 0.87 22.59 27.47 -169.99 -4.67 17.92 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 13 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 14 C 0.10 1.67 4.30 -4.97 -0.02 1.65 16 15 C -0.22 -3.74 5.03 -104.21 -0.52 -4.27 16 16 C 0.30 4.25 6.79 -83.62 -0.57 3.68 16 17 N -0.85 -9.45 9.00 32.52 0.29 -9.16 16 18 C -0.27 -3.37 9.99 -39.24 -0.39 -3.77 16 19 C 0.17 2.30 11.17 -17.61 -0.20 2.11 16 20 N -0.56 -10.08 10.37 -13.70 -0.14 -10.22 16 21 C 0.35 6.77 7.44 -17.41 -0.13 6.64 16 22 F -0.11 -2.33 15.51 2.25 0.03 -2.30 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.56 6.24 -51.93 -0.32 0.23 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.99 6.59 -51.93 -0.34 1.65 16 29 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 30 H 0.03 0.78 4.84 -51.93 -0.25 0.53 16 31 H -0.02 -0.40 7.55 -51.93 -0.39 -0.79 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.07 1.01 5.18 -51.93 -0.27 0.74 16 34 H 0.04 0.76 7.33 -51.93 -0.38 0.37 16 35 H 0.41 4.58 6.00 -40.82 -0.24 4.33 16 36 H 0.40 3.20 8.86 -40.82 -0.36 2.84 16 37 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 309.17 15.07 4.66 4.66 Total: -1.00 -33.32 309.17 -7.21 -40.54 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.08 Total: 2.36 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.04 Total: -5.01 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.12 Total: -58.17 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.32 -7.21 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238155959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.403 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds