Wall clock time and date at job start Mon Mar 30 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 N 1.46892 * 109.47090 * 174.56887 * 3 2 1 5 5 C 1.46906 * 110.99901 * 195.81401 * 4 3 2 6 6 C 1.50697 * 109.47110 * 66.04483 * 5 4 3 7 7 H 1.07997 * 120.00304 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99736 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99996 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 119.99999 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47278 * 89.99628 * 10 8 6 12 12 H 1.48500 * 109.47081 * 209.99699 * 10 8 6 13 13 H 1.48498 * 109.47165 * 329.99781 * 10 8 6 14 14 C 1.46903 * 111.00308 * 71.86078 * 4 3 2 15 15 C 1.50702 * 109.47353 * 199.23738 * 14 4 3 16 16 C 1.39374 * 120.47228 * 83.65934 * 15 14 4 17 17 N 1.39175 * 120.85317 * 0.02788 * 16 15 14 18 18 C 1.39532 * 118.29235 * 180.02562 * 16 15 14 19 19 C 1.37842 * 119.13293 * 359.97438 * 18 16 15 20 20 N 1.32027 * 120.86947 * 0.02562 * 19 18 16 21 21 C 1.32189 * 121.87646 * 359.70130 * 20 19 18 22 22 F 1.35102 * 119.61618 * 180.31014 * 21 20 19 23 23 H 1.09002 * 109.46853 * 300.00325 * 1 2 3 24 24 H 1.09004 * 109.47067 * 59.99929 * 1 2 3 25 25 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47116 * 240.00123 * 2 1 3 27 27 H 1.08995 * 109.47134 * 120.00308 * 2 1 3 28 28 H 1.08998 * 109.46931 * 54.56601 * 3 2 1 29 29 H 1.09005 * 109.47052 * 294.56913 * 3 2 1 30 30 H 1.09003 * 109.47011 * 186.04839 * 5 4 3 31 31 H 1.08998 * 109.46653 * 306.04140 * 5 4 3 32 32 H 0.96993 * 120.00201 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.46439 * 319.23608 * 14 4 3 34 34 H 1.08993 * 109.47512 * 79.23374 * 14 4 3 35 35 H 0.96996 * 120.00084 * 359.97438 * 17 16 15 36 36 H 0.97004 * 119.99709 * 179.97438 * 17 16 15 37 37 H 1.08005 * 120.43260 * 179.97438 * 18 16 15 38 38 H 1.07996 * 119.56481 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5032 1.4445 0.1311 5 6 3.9960 2.7760 0.5085 6 6 3.5114 3.1168 1.8941 7 1 2.8990 2.4145 2.4400 8 6 3.8509 4.3249 2.4654 9 7 3.4276 4.6227 3.6744 10 14 4.9109 5.5394 1.5215 11 1 4.0406 6.4423 0.7262 12 1 5.7148 6.3422 2.4777 13 1 5.8199 4.7990 0.6101 14 6 4.1433 0.9774 -1.1059 15 6 5.5553 0.5433 -0.8079 16 6 5.8135 -0.7372 -0.3220 17 7 4.7770 -1.6398 -0.1027 18 6 7.1377 -1.0910 -0.0611 19 6 8.1365 -0.1694 -0.2916 20 7 7.8536 1.0350 -0.7527 21 6 6.6133 1.4075 -1.0175 22 9 6.3764 2.6494 -1.4939 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.5995 1.9836 0.8373 29 1 1.7583 1.9275 -0.9347 30 1 5.0860 2.7774 0.4941 31 1 3.6224 3.5158 -0.1994 32 1 3.6667 5.4723 4.0764 33 1 3.5817 0.1349 -1.5097 34 1 4.1583 1.7870 -1.8354 35 1 3.8609 -1.3807 -0.2880 36 1 4.9709 -2.5281 0.2354 37 1 7.3771 -2.0742 0.3166 38 1 9.1638 -0.4357 -0.0917 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238155959.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:37 Heat of formation + Delta-G solvation = -33.395770 kcal Electronic energy + Delta-G solvation = -21082.563520 eV Core-core repulsion = 17873.244137 eV Total energy + Delta-G solvation = -3209.319383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03681 -41.14759 -38.83754 -36.33176 -34.94038 -34.17583 -32.29310 -30.91120 -29.80681 -27.49968 -25.78460 -23.91938 -23.51475 -22.52242 -21.33588 -19.25472 -19.12546 -18.88304 -17.27290 -17.03187 -16.60770 -16.42113 -16.33973 -15.97498 -15.62078 -15.39662 -14.75420 -14.56809 -14.33994 -14.30172 -14.14231 -13.78662 -13.28767 -13.10519 -12.81664 -12.68061 -12.51572 -12.40779 -12.28565 -11.90046 -11.68231 -11.46832 -11.31654 -10.82884 -10.55561 -9.84852 -9.12738 -8.93534 -8.33843 -6.34267 0.05573 0.51461 1.24385 1.28602 1.41417 2.28040 2.58020 2.78791 2.94340 2.99950 3.26422 3.67375 3.83101 3.95053 4.10541 4.28079 4.30051 4.48638 4.56510 4.59760 4.70760 4.76924 4.82922 4.89787 4.92536 4.98732 5.06716 5.08902 5.23770 5.40992 5.47310 5.52050 5.69870 5.93871 6.31466 6.38303 6.56579 6.71188 6.89059 6.90635 7.29049 8.82225 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.009292 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.431149 B = 3012.492104 C = 4499.549627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C 0.055 3.945 4 N -0.525 5.525 5 C 0.178 3.822 6 C -0.506 4.506 7 H 0.048 0.952 8 C 0.018 3.982 9 N -0.941 5.941 10 Si 0.926 3.074 11 H -0.265 1.265 12 H -0.278 1.278 13 H -0.264 1.264 14 C 0.102 3.898 15 C -0.237 4.237 16 C 0.293 3.707 17 N -0.835 5.835 18 C -0.253 4.253 19 C 0.159 3.841 20 N -0.591 5.591 21 C 0.315 3.685 22 F -0.135 7.135 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.027 0.973 30 H 0.016 0.984 31 H -0.025 1.025 32 H 0.267 0.733 33 H 0.107 0.893 34 H 0.029 0.971 35 H 0.406 0.594 36 H 0.418 0.582 37 H 0.179 0.821 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.290 -16.688 -11.083 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.072 4.072 4 N -0.248 5.248 5 C 0.050 3.950 6 C -0.544 4.544 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.582 5.582 10 Si 0.751 3.249 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.189 1.189 14 C -0.026 4.026 15 C -0.246 4.246 16 C 0.175 3.825 17 N -0.374 5.374 18 C -0.278 4.278 19 C 0.004 3.996 20 N -0.310 5.310 21 C 0.163 3.837 22 F -0.114 7.114 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.034 0.966 31 H -0.007 1.007 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.048 0.952 35 H 0.238 0.762 36 H 0.250 0.750 37 H 0.197 0.803 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.045 -16.238 -10.741 19.705 hybrid contribution -0.724 1.465 -0.425 1.688 sum 2.321 -14.773 -11.165 18.663 Atomic orbital electron populations 1.21706 0.94616 1.02555 1.01553 1.21505 0.96323 0.94586 1.02290 1.22167 0.87046 0.98478 0.99543 1.62004 1.05769 1.26547 1.30525 1.19845 0.94936 0.86130 0.94057 1.21203 1.31471 1.01802 0.99963 0.93421 1.25613 0.97028 0.99759 0.95590 1.70001 1.47652 1.24398 1.16129 0.86014 0.79969 0.79736 0.79168 1.19000 1.20285 1.18882 1.20765 0.90684 0.99986 0.91170 1.19953 0.95722 0.95482 1.13489 1.17634 0.90049 0.87460 0.87349 1.42409 1.07265 1.15574 1.72141 1.21950 0.90292 1.04414 1.11170 1.22815 1.01526 0.85249 0.90025 1.67034 1.20313 1.22526 1.21112 1.18021 0.90415 0.80175 0.95121 1.91528 1.94398 1.40151 1.85355 0.93973 0.92438 0.90541 0.90549 0.91770 0.92670 0.95518 0.96600 1.00716 0.92427 0.87529 0.95237 0.76243 0.74988 0.80328 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.91 71.98 0.71 -2.50 16 2 C -0.11 -2.77 5.29 30.60 0.16 -2.61 16 3 C 0.06 1.99 4.80 86.31 0.41 2.41 16 4 N -0.52 -21.22 4.38 -905.37 -3.96 -25.18 16 5 C 0.18 9.06 3.56 85.55 0.30 9.36 16 6 C -0.51 -30.08 8.84 25.60 0.23 -29.85 16 7 H 0.05 3.08 7.50 -2.91 -0.02 3.06 16 8 C 0.02 1.10 5.47 84.66 0.46 1.56 16 9 N -0.94 -60.05 13.96 21.45 0.30 -59.75 16 10 Si 0.93 47.74 27.47 68.60 1.88 49.62 16 11 H -0.26 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 13 H -0.26 -13.72 6.54 99.48 0.65 -13.07 16 14 C 0.10 3.41 4.30 85.56 0.37 3.78 16 15 C -0.24 -7.99 5.03 -19.60 -0.10 -8.09 16 16 C 0.29 7.59 6.79 38.56 0.26 7.86 16 17 N -0.83 -15.40 9.00 -51.01 -0.46 -15.86 16 18 C -0.25 -5.42 9.99 22.49 0.22 -5.20 16 19 C 0.16 4.00 11.17 84.57 0.94 4.94 16 20 N -0.59 -21.00 10.37 -197.24 -2.05 -23.05 16 21 C 0.31 12.24 7.44 84.63 0.63 12.87 16 22 F -0.14 -5.87 15.51 44.97 0.70 -5.17 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.50 6.24 -2.39 -0.01 1.49 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 2.41 6.59 -2.39 -0.02 2.40 16 29 H 0.03 0.92 8.05 -2.38 -0.02 0.90 16 30 H 0.02 0.87 4.84 -2.39 -0.01 0.85 16 31 H -0.02 -1.29 7.55 -2.39 -0.02 -1.31 16 32 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.11 2.72 5.18 -2.39 -0.01 2.71 16 34 H 0.03 1.06 7.33 -2.39 -0.02 1.04 16 35 H 0.41 7.66 6.00 -92.71 -0.56 7.11 16 36 H 0.42 4.77 8.86 -92.71 -0.82 3.95 16 37 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -76.17 309.17 0.69 -75.48 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -0.34 Total: 9.38 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.61 Total: -5.48 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.17 Total: -123.83 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.70 Total: -5.17 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.88 Total: 49.62 kcal Total: -76.17 0.69 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238155959.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.080 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds