Wall clock time and date at job start Mon Mar 30 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47393 * 2 1 4 4 C 1.52996 * 109.47469 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47548 * 180.36597 * 4 3 2 6 6 C 1.46905 * 110.99773 * 298.60916 * 5 4 3 7 7 C 1.50698 * 109.46724 * 293.55816 * 6 5 4 8 8 H 1.08004 * 120.00564 * 354.98751 * 7 6 5 9 9 C 1.37884 * 120.00141 * 174.98264 * 7 6 5 10 10 N 1.31519 * 119.99489 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00219 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47351 * 90.00220 * 11 9 7 13 13 H 1.48504 * 109.47043 * 210.00428 * 11 9 7 14 14 H 1.48501 * 109.47266 * 330.00147 * 11 9 7 15 15 C 1.46901 * 111.00276 * 62.55692 * 5 4 3 16 16 C 1.50702 * 109.46760 * 66.04720 * 15 5 4 17 17 C 1.33395 * 122.54238 * 270.25551 * 16 15 5 18 18 S 1.75880 * 109.59114 * 180.24350 * 17 16 15 19 19 C 1.75880 * 90.97495 * 359.73014 * 18 17 16 20 20 C 1.50705 * 125.20690 * 179.97438 * 19 18 17 21 21 C 1.33395 * 109.59018 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46932 * 300.00191 * 1 2 3 24 24 H 1.09007 * 109.46895 * 59.99716 * 1 2 3 25 25 H 1.09001 * 109.46932 * 239.99809 * 2 1 3 26 26 H 1.08994 * 109.47214 * 120.00120 * 2 1 3 27 27 H 1.09001 * 109.47238 * 59.99996 * 3 2 1 28 28 H 1.09004 * 109.46877 * 300.00245 * 3 2 1 29 29 H 1.09005 * 109.47224 * 60.35855 * 4 3 2 30 30 H 1.09011 * 109.46965 * 300.36649 * 4 3 2 31 31 H 1.08994 * 109.46964 * 53.55743 * 6 5 4 32 32 H 1.08994 * 109.47209 * 173.56355 * 6 5 4 33 33 H 0.96995 * 119.99766 * 179.97438 * 10 9 7 34 34 H 1.08998 * 109.47299 * 306.05299 * 15 5 4 35 35 H 1.08999 * 109.47425 * 186.04859 * 15 5 4 36 36 H 1.07995 * 125.19925 * 359.97438 * 17 16 15 37 37 H 1.09003 * 109.46750 * 270.02530 * 20 19 18 38 38 H 1.09001 * 109.46914 * 30.02650 * 20 19 18 39 39 H 1.08998 * 109.46745 * 150.02611 * 20 19 18 40 40 H 1.08002 * 122.53805 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0598 2.8274 0.0082 6 6 3.6156 3.5504 -1.1910 7 6 4.2728 2.9544 -2.4091 8 1 5.0132 2.1761 -2.2970 9 6 3.9288 3.4025 -3.6669 10 7 3.0275 4.3505 -3.8034 11 14 4.7429 2.6631 -5.1768 12 1 3.9502 1.4985 -5.6463 13 1 4.8085 3.6838 -6.2535 14 1 6.1172 2.2194 -4.8310 15 6 3.6399 3.5265 1.2301 16 6 4.3138 2.9003 2.4237 17 6 3.7752 1.8853 3.1013 18 16 4.8396 1.4289 4.4249 19 6 5.9941 2.6737 3.9654 20 6 7.2958 2.9545 4.6711 21 6 5.5408 3.3318 2.8974 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9330 0.9344 -0.8941 30 1 3.9338 0.9228 0.8859 31 1 2.5329 3.4675 -1.2850 32 1 3.8936 4.6009 -1.1056 33 1 2.7858 4.6660 -4.6882 34 1 2.5585 3.4475 1.3405 35 1 3.9225 4.5771 1.1629 36 1 2.8281 1.4184 2.8745 37 1 7.1314 3.6923 5.4565 38 1 7.6762 2.0331 5.1120 39 1 8.0210 3.3413 3.9552 40 1 6.0880 4.1423 2.4390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248803278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:52 Heat of formation + Delta-G solvation = 16.428497 kcal Electronic energy + Delta-G solvation = -18433.406787 eV Core-core repulsion = 15760.168371 eV Total energy + Delta-G solvation = -2673.238416 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.76004 -36.67052 -33.87492 -32.68178 -31.69955 -28.42574 -27.67826 -26.42604 -24.96985 -23.23913 -21.44846 -21.12916 -19.40850 -18.52198 -16.80397 -16.17967 -15.28143 -14.82217 -14.67734 -14.52647 -14.01048 -13.61751 -13.52865 -13.13980 -12.68161 -12.50842 -12.32548 -12.16835 -12.03285 -11.80496 -11.44835 -11.12300 -11.03569 -10.88588 -10.74048 -10.65866 -10.56194 -10.47701 -10.34236 -9.89401 -9.66251 -9.18171 -8.41852 -8.34314 -8.10538 -7.10251 -6.00568 -4.01099 1.23211 1.84573 2.19655 3.00407 3.32626 3.39073 3.43767 4.45271 4.92471 5.13850 5.26752 5.31678 5.35210 5.36185 5.40425 5.49855 5.54923 5.59141 5.82253 5.84225 5.90876 5.97446 6.10419 6.14724 6.18979 6.24483 6.34828 6.37356 6.46959 6.57476 6.71445 6.78945 6.87133 7.00375 7.34116 7.45711 7.84096 8.12569 8.23923 8.58587 9.07159 9.62887 11.10016 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.017038 B = 0.005521 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.958765 B = 5069.956782 C = 6169.909472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.065 3.935 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.104 3.896 16 C -0.070 4.070 17 C -0.211 4.211 18 S 0.060 5.940 19 C -0.186 4.186 20 C -0.078 4.078 21 C -0.114 4.114 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.003 0.997 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -5.114 15.177 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.197 4.197 4 C -0.064 4.064 5 N -0.251 5.251 6 C 0.064 3.936 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.027 4.027 16 C -0.083 4.083 17 C -0.346 4.346 18 S 0.323 5.677 19 C -0.303 4.303 20 C -0.137 4.137 21 C -0.145 4.145 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.176 0.824 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.493 -6.095 16.170 17.345 hybrid contribution -0.596 0.709 -2.092 2.288 sum 0.897 -5.386 14.078 15.100 Atomic orbital electron populations 1.21771 0.96602 1.00747 1.01628 1.21422 0.95173 0.97583 1.01385 1.22259 0.99063 0.96229 1.02129 1.22056 0.91385 0.91441 1.01493 1.62338 1.59188 1.01985 1.01571 1.19799 0.94631 0.93524 0.85643 1.21138 1.22356 1.20616 0.89968 0.91982 1.24962 0.95302 0.95249 0.99011 1.69956 1.32169 1.28625 1.23180 0.86549 0.79923 0.78739 0.82533 1.20795 1.21322 1.19811 1.20800 0.96094 0.97679 0.88103 1.18970 0.95118 0.96603 0.97570 1.25356 1.04806 1.03769 1.00718 1.83960 1.14236 1.36938 1.32579 1.24327 1.01653 1.01887 1.02431 1.20282 0.91898 1.01756 0.99742 1.20016 0.96280 1.02015 0.96145 0.93420 0.93310 0.92673 0.92007 0.92916 0.93143 0.90505 0.90309 0.92687 0.97878 0.95789 0.93018 0.94498 0.90669 0.82408 0.91173 0.91703 0.90604 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.16 -2.79 4.56 -26.73 -0.12 -2.91 16 4 C 0.06 1.25 4.85 -3.83 -0.02 1.24 16 5 N -0.53 -11.23 4.69 -237.52 -1.11 -12.35 16 6 C 0.19 4.81 4.51 -4.97 -0.02 4.78 16 7 C -0.50 -13.93 8.40 -34.44 -0.29 -14.22 16 8 H 0.06 1.73 7.33 -52.48 -0.38 1.35 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 11 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.10 1.88 5.03 -4.97 -0.03 1.85 16 16 C -0.07 -1.13 4.80 -106.25 -0.51 -1.64 16 17 C -0.21 -3.06 9.28 29.04 0.27 -2.79 16 18 S 0.06 0.77 23.33 -107.50 -2.51 -1.74 16 19 C -0.19 -2.45 6.51 -36.00 -0.23 -2.69 16 20 C -0.08 -0.77 10.38 36.01 0.37 -0.40 16 21 C -0.11 -1.71 9.85 -41.21 -0.41 -2.12 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.84 6.15 -51.93 -0.32 0.52 16 28 H 0.08 1.61 6.32 -51.93 -0.33 1.28 16 29 H 0.08 1.69 6.95 -51.93 -0.36 1.33 16 30 H 0.05 0.99 6.07 -51.92 -0.32 0.67 16 31 H 0.00 0.09 6.03 -51.93 -0.31 -0.22 16 32 H 0.02 0.66 7.92 -51.93 -0.41 0.24 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.04 0.66 6.05 -51.93 -0.31 0.34 16 35 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 36 H 0.16 2.16 7.89 -52.49 -0.41 1.75 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -28.99 331.76 -10.29 -39.29 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.51 Total: -0.12 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -0.87 Total: -20.97 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.38 Total: -38.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.99 -10.29 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248803278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.714 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds